Wall clock time and date at job start Tue Mar 31 2020 10:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35987 * 117.00199 * 2 1 4 4 C 1.38561 * 120.07453 * 359.97438 * 3 2 1 5 5 C 1.38245 * 120.00240 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.14249 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.92175 * 179.97438 * 6 5 4 8 8 N 1.46897 * 109.46801 * 90.00223 * 7 6 5 9 9 C 1.48542 * 111.00403 * 52.60297 * 8 7 6 10 10 C 1.54940 * 103.22597 * 159.71906 * 9 8 7 11 11 C 1.54597 * 102.92130 * 322.58290 * 10 9 8 12 12 C 1.47911 * 110.99996 * 169.99687 * 8 7 6 13 13 C 1.38234 * 120.14940 * 359.97438 * 6 5 4 14 14 C 1.38566 * 119.99993 * 0.02562 * 13 6 5 15 15 O 1.35998 * 120.07272 * 180.02562 * 14 13 6 16 16 C 1.42895 * 116.99860 * 359.97438 * 15 14 13 17 17 C 1.53005 * 109.46934 * 180.02562 * 16 15 14 18 18 C 1.50691 * 109.47392 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00260 * 359.97438 * 18 17 16 20 20 C 1.37881 * 120.00312 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99572 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99970 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47469 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46953 * 120.00269 * 22 20 18 25 25 H 1.48500 * 109.47072 * 239.99694 * 22 20 18 26 26 H 1.08996 * 109.47536 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47077 * 300.00595 * 1 2 3 28 28 H 1.09004 * 109.47037 * 60.00343 * 1 2 3 29 29 H 1.08005 * 119.99996 * 0.04722 * 4 3 2 30 30 H 1.07998 * 119.92777 * 179.72640 * 5 4 3 31 31 H 1.09000 * 109.46603 * 209.99966 * 7 6 5 32 32 H 1.08998 * 109.47483 * 329.99925 * 7 6 5 33 33 H 1.09002 * 110.66219 * 278.15273 * 9 8 7 34 34 H 1.08997 * 110.66615 * 41.28132 * 9 8 7 35 35 H 1.09001 * 110.71807 * 204.22664 * 10 9 8 36 36 H 1.08991 * 110.72376 * 80.94433 * 10 9 8 37 37 H 1.09000 * 110.30822 * 263.04416 * 11 10 9 38 38 H 1.09001 * 110.30222 * 140.87572 * 11 10 9 39 39 H 1.09001 * 109.91005 * 333.50649 * 12 8 7 40 40 H 1.08996 * 109.91712 * 94.60090 * 12 8 7 41 41 H 1.08006 * 120.00369 * 180.02562 * 13 6 5 42 42 H 1.08999 * 109.47483 * 299.99541 * 16 15 14 43 43 H 1.08990 * 109.47690 * 60.00392 * 16 15 14 44 44 H 1.09004 * 109.47140 * 300.00022 * 17 16 15 45 45 H 1.09004 * 109.47336 * 59.99788 * 17 16 15 46 46 H 0.97002 * 119.99537 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2933 2.3747 -0.0005 5 6 1.9225 3.6057 -0.0011 6 6 3.3031 3.6797 -0.0016 7 6 3.9839 5.0242 -0.0028 8 7 4.2055 5.4619 1.3818 9 6 4.9102 4.4147 2.1649 10 6 5.5095 5.2052 3.3552 11 6 5.9311 6.5427 2.7046 12 6 5.0785 6.6551 1.4272 13 6 4.0604 2.5232 -0.0011 14 6 3.4360 1.2862 -0.0005 15 8 4.1796 0.1475 0.0005 16 6 5.6003 0.3005 0.0004 17 6 6.2618 -1.0792 0.0011 18 6 7.7601 -0.9180 0.0003 19 1 8.1970 0.0698 -0.0009 20 6 8.5733 -2.0314 0.0013 21 7 8.0414 -3.2341 0.0022 22 14 10.4306 -1.8314 -0.0003 23 1 10.7730 -0.3864 -0.0019 24 1 10.9985 -2.4729 1.2126 25 1 10.9968 -2.4761 -1.2123 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 0.2147 2.3196 -0.0002 30 1 1.3344 4.5114 -0.0060 31 1 4.9418 4.9459 -0.5169 32 1 3.3538 5.7501 -0.5169 33 1 4.2071 3.6607 2.5189 34 1 5.7005 3.9564 1.5705 35 1 6.3755 4.6861 3.7658 36 1 4.7569 5.3714 4.1258 37 1 6.9911 6.5226 2.4514 38 1 5.7174 7.3740 3.3764 39 1 5.7250 6.6756 0.5499 40 1 4.4704 7.5590 1.4614 41 1 5.1387 2.5838 -0.0011 42 1 5.9067 0.8494 -0.8900 43 1 5.9066 0.8509 0.8899 44 1 5.9555 -1.6286 0.8913 45 1 5.9555 -1.6294 -0.8887 46 1 8.6135 -4.0174 0.0025 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119992577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:47 Heat of formation + Delta-G solvation = -73.402693 kcal Electronic energy + Delta-G solvation = -25121.825110 eV Core-core repulsion = 21589.948551 eV Total energy + Delta-G solvation = -3531.876559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62148 -39.93509 -39.47826 -37.87387 -35.50344 -33.77333 -32.45523 -31.16797 -30.51813 -29.64580 -28.30972 -27.09546 -25.93825 -23.98403 -22.97391 -22.08775 -21.67916 -21.58132 -19.45162 -18.65108 -17.78887 -17.60443 -17.21866 -16.87277 -16.75937 -16.54098 -16.35396 -15.68913 -15.34543 -15.10199 -15.02388 -14.43953 -14.32250 -14.23383 -13.92789 -13.58462 -13.37791 -13.15828 -12.98682 -12.79707 -12.68254 -12.52532 -12.39411 -12.22715 -12.13832 -11.99683 -11.90728 -11.81312 -11.60384 -11.59256 -11.42760 -11.40226 -10.64608 -9.70381 -9.40533 -8.72518 -8.28026 -6.42277 0.27264 0.44521 1.39134 1.40614 1.53923 2.25192 2.41274 2.49388 2.63357 3.06176 3.20915 3.61491 3.77060 3.80390 3.93557 4.04278 4.11527 4.15613 4.21790 4.26292 4.34968 4.38468 4.42481 4.44299 4.55861 4.59994 4.63197 4.70254 4.73806 4.76751 4.83336 4.93224 4.97570 5.07796 5.14990 5.19281 5.27047 5.29894 5.32559 5.43718 5.58451 5.66066 5.77346 5.90780 6.03535 6.04936 6.23219 6.69692 6.72965 7.27917 8.85580 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009154 B = 0.004401 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.152321 B = 6361.141846 C = 8970.685860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.076 3.924 4 C -0.165 4.165 5 C -0.095 4.095 6 C -0.083 4.083 7 C 0.093 3.907 8 N -0.515 5.515 9 C 0.033 3.967 10 C -0.125 4.125 11 C -0.127 4.127 12 C 0.032 3.968 13 C -0.171 4.171 14 C 0.070 3.930 15 O -0.336 6.336 16 C 0.087 3.913 17 C 0.031 3.969 18 C -0.545 4.545 19 H 0.070 0.930 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.977 3.023 23 H -0.257 1.257 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.165 0.835 30 H 0.158 0.842 31 H 0.040 0.960 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.056 0.944 43 H 0.056 0.944 44 H -0.004 1.004 45 H -0.004 1.004 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.861 21.394 2.344 25.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.256 6.256 3 C 0.030 3.970 4 C -0.184 4.184 5 C -0.114 4.114 6 C -0.084 4.084 7 C -0.035 4.035 8 N -0.239 5.239 9 C -0.094 4.094 10 C -0.163 4.163 11 C -0.165 4.165 12 C -0.096 4.096 13 C -0.190 4.190 14 C 0.025 3.975 15 O -0.250 6.250 16 C 0.013 3.987 17 C -0.007 4.007 18 C -0.583 4.583 19 H 0.088 0.912 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.800 3.200 23 H -0.181 1.181 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.128 0.872 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.182 0.818 30 H 0.176 0.824 31 H 0.058 0.942 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.142 0.858 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.315 20.950 2.545 24.954 hybrid contribution 1.675 -0.864 -0.448 1.937 sum -11.640 20.086 2.098 23.309 Atomic orbital electron populations 1.23351 0.76414 1.05293 1.02523 1.86185 1.23533 1.26724 1.89202 1.18635 0.88982 0.86288 1.03055 1.21337 1.01038 0.90382 1.05602 1.21001 0.93271 0.97758 0.99325 1.19585 0.94151 0.93616 1.01037 1.21213 0.99245 0.92898 0.90105 1.64941 1.43519 1.04564 1.10898 1.23196 0.96203 0.94883 0.95164 1.22496 1.00689 0.95951 0.97146 1.22402 0.99547 0.97941 0.96634 1.22987 0.94626 0.94195 0.97764 1.21050 1.00205 0.90889 1.06862 1.18836 0.89405 0.86616 1.02665 1.86181 1.20241 1.29796 1.88824 1.22805 0.75967 0.99986 0.99957 1.18939 0.94833 0.91067 0.95815 1.21393 0.90961 0.93684 1.52231 0.91202 1.26056 1.04970 0.94549 0.94057 1.70139 1.37621 0.98681 1.50559 0.85223 0.77775 0.79000 0.77971 1.18114 1.20100 1.20124 0.87216 0.91212 0.91092 0.81753 0.82446 0.94161 0.87472 0.91827 0.94929 0.90927 0.90503 0.91193 0.89507 0.93499 0.88856 0.85803 0.92623 0.92625 0.98548 0.98557 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.34 -11.63 10.28 -79.54 -0.82 -12.44 16 3 C 0.08 2.53 6.70 22.57 0.15 2.68 16 4 C -0.17 -3.96 9.04 22.35 0.20 -3.76 16 5 C -0.10 -2.09 9.69 22.28 0.22 -1.88 16 6 C -0.08 -2.12 4.60 -19.86 -0.09 -2.21 16 7 C 0.09 1.92 5.18 85.56 0.44 2.36 16 8 N -0.51 -10.79 5.39 -887.53 -4.78 -15.58 16 9 C 0.03 0.81 4.97 86.65 0.43 1.24 16 10 C -0.12 -2.42 7.06 31.80 0.22 -2.19 16 11 C -0.13 -1.99 6.93 31.47 0.22 -1.77 16 12 C 0.03 0.52 6.70 86.44 0.58 1.10 16 13 C -0.17 -5.55 7.33 22.35 0.16 -5.39 16 14 C 0.07 2.71 6.70 22.57 0.15 2.86 16 15 O -0.34 -15.78 9.92 -79.67 -0.79 -16.57 16 16 C 0.09 4.10 4.68 71.98 0.34 4.44 16 17 C 0.03 1.76 5.34 29.85 0.16 1.92 16 18 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16 19 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 20 C 0.00 0.13 5.46 84.66 0.46 0.59 16 21 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 22 Si 0.98 44.17 29.54 68.60 2.03 46.19 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16 28 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 29 H 0.17 2.72 6.30 -2.91 -0.02 2.70 16 30 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.04 0.87 7.75 -2.39 -0.02 0.85 16 32 H 0.11 1.73 8.08 -2.39 -0.02 1.71 16 33 H 0.06 1.77 7.73 -2.39 -0.02 1.76 16 34 H 0.03 0.87 7.08 -2.39 -0.02 0.86 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 0.76 7.57 -2.39 -0.02 0.74 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.12 4.12 5.62 -2.91 -0.02 4.11 16 42 H 0.06 2.46 7.66 -2.39 -0.02 2.45 16 43 H 0.06 2.46 7.66 -2.39 -0.02 2.44 16 44 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 45 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 46 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -72.70 369.07 1.86 -70.84 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.95 Total: 15.04 kcal Atomic # 6 Polarization: -34.93 SS G_CDS: 4.99 Total: -29.94 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -4.50 Total: -73.12 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.61 Total: -29.02 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.70 1.86 -70.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119992577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.560 kcal (2) G-P(sol) polarization free energy of solvation -72.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds