Wall clock time and date at job start Tue Mar 31 2020 10:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35982 * 116.99909 * 2 1 4 4 C 1.38715 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.99898 * 179.97438 * 4 3 2 6 6 C 1.38722 * 119.99938 * 359.97438 * 5 4 3 7 7 O 1.35982 * 120.00023 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00137 * 0.02562 * 7 6 5 9 9 C 1.38673 * 119.99773 * 0.02562 * 6 5 4 10 10 C 1.50705 * 119.99890 * 179.97438 * 9 6 5 11 11 N 1.46499 * 109.46614 * 79.99996 * 10 9 6 12 12 C 1.36932 * 120.00447 * 269.99779 * 11 10 9 13 13 H 1.08005 * 120.00281 * 140.44176 * 12 11 10 14 14 C 1.38814 * 120.00246 * 320.45058 * 12 11 10 15 15 N 1.31619 * 120.00238 * 158.96847 * 14 12 11 16 16 Si 1.86807 * 119.99742 * 338.97157 * 14 12 11 17 17 H 1.48492 * 109.47424 * 95.21593 * 16 14 12 18 18 H 1.48497 * 109.47066 * 215.22168 * 16 14 12 19 19 H 1.48507 * 109.46745 * 335.21458 * 16 14 12 20 20 C 1.46503 * 120.00087 * 90.00386 * 11 10 9 21 21 C 1.54965 * 110.92650 * 130.57181 * 20 11 10 22 22 C 1.54263 * 104.15782 * 156.29797 * 21 20 11 23 23 C 1.53871 * 106.64140 * 336.44534 * 22 21 20 24 24 C 1.54257 * 106.60015 * 359.97438 * 23 22 21 25 25 C 1.38154 * 120.00205 * 0.23466 * 9 6 5 26 26 H 1.08995 * 109.47093 * 299.99913 * 1 2 3 27 27 H 1.09000 * 109.47324 * 59.99996 * 1 2 3 28 28 H 1.08998 * 109.46933 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.00767 * 359.96977 * 4 3 2 30 30 H 1.08000 * 119.99899 * 179.97438 * 5 4 3 31 31 H 1.09006 * 109.47304 * 59.99551 * 8 7 6 32 32 H 1.08996 * 109.47496 * 179.97438 * 8 7 6 33 33 H 1.09001 * 109.46932 * 300.00203 * 8 7 6 34 34 H 1.09000 * 109.47263 * 320.00274 * 10 9 6 35 35 H 1.08990 * 109.47207 * 199.99954 * 10 9 6 36 36 H 0.96999 * 119.99497 * 179.97438 * 15 14 12 37 37 H 1.09002 * 110.66903 * 7.26928 * 20 11 10 38 38 H 1.09000 * 110.47712 * 37.64288 * 21 20 11 39 39 H 1.09004 * 110.52591 * 274.97833 * 21 20 11 40 40 H 1.09006 * 110.02901 * 217.13508 * 22 21 20 41 41 H 1.09008 * 110.03138 * 95.75945 * 22 21 20 42 42 H 1.09003 * 110.03187 * 119.26407 * 23 22 21 43 43 H 1.08999 * 110.02939 * 240.64033 * 23 22 21 44 44 H 1.09002 * 110.48715 * 142.28749 * 24 23 22 45 45 H 1.09001 * 110.48777 * 264.79924 * 24 23 22 46 46 H 1.08000 * 120.00017 * 179.72579 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3749 0.0005 5 6 1.9178 3.6056 0.0011 6 6 3.3031 3.6782 0.0016 7 8 3.9204 4.8898 0.0016 8 6 3.0805 6.0459 0.0016 9 6 4.0584 2.5152 0.0011 10 6 5.5633 2.5940 0.0011 11 7 6.0384 2.8585 1.3614 12 6 6.1993 4.1484 1.7919 13 1 5.9212 4.4202 2.7995 14 6 6.7198 5.1069 0.9332 15 7 6.5028 6.3844 1.1637 16 14 7.7280 4.5834 -0.5498 17 1 6.8493 4.5084 -1.7444 18 1 8.8066 5.5754 -0.7901 19 1 8.3299 3.2502 -0.2934 20 6 6.3414 1.7429 2.2614 21 6 7.7344 1.9225 2.9161 22 6 7.6531 1.0882 4.2110 23 6 6.1611 0.9759 4.5700 24 6 5.3866 1.7466 3.4811 25 6 3.4312 1.2842 -0.0049 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2123 2.3185 0.0005 30 1 1.3295 4.5113 0.0011 31 1 2.4511 6.0378 0.8916 32 1 3.6983 6.9439 0.0021 33 1 2.4512 6.0378 -0.8884 34 1 5.8850 3.3995 -0.6591 35 1 5.9767 1.6489 -0.3508 36 1 6.8669 7.0541 0.5638 37 1 6.2849 0.7932 1.7294 38 1 7.9138 2.9721 3.1491 39 1 8.5166 1.5368 2.2621 40 1 8.1935 1.5906 5.0134 41 1 8.0725 0.0961 4.0430 42 1 5.8560 -0.0705 4.5754 43 1 5.9775 1.4231 5.5470 44 1 4.4563 1.2330 3.2388 45 1 5.1844 2.7670 3.8067 46 1 4.0194 0.3785 -0.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123453311.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:09 Heat of formation + Delta-G solvation = -24.059810 kcal Electronic energy + Delta-G solvation = -26837.296823 eV Core-core repulsion = 23307.559932 eV Total energy + Delta-G solvation = -3529.736891 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -39.94711 -38.42141 -37.67118 -35.86459 -34.39693 -31.67406 -30.60696 -29.31952 -27.87789 -27.18373 -26.90932 -26.31271 -25.30495 -22.65534 -21.56063 -20.67113 -19.54483 -19.15966 -17.68970 -16.95702 -16.32125 -16.16193 -15.51470 -15.29264 -15.09406 -14.75479 -14.33467 -14.23474 -14.00394 -13.22601 -13.06606 -12.98308 -12.60301 -12.50510 -12.32147 -12.16529 -11.96408 -11.78476 -11.37448 -11.05637 -10.97135 -10.88320 -10.70652 -10.56117 -10.35930 -10.33121 -10.05529 -9.88523 -9.84209 -9.78246 -9.63288 -9.38171 -8.38126 -8.27785 -7.06861 -6.62925 -5.83952 -3.24388 1.77004 2.06993 3.43144 3.55286 3.57250 3.61497 4.19404 4.29329 4.67877 5.06652 5.11587 5.19262 5.21275 5.29001 5.36943 5.41155 5.47187 5.51295 5.62096 5.70410 5.73599 5.86485 5.92412 6.00967 6.11991 6.19991 6.20799 6.26113 6.29471 6.35370 6.39063 6.47720 6.50538 6.56376 6.62504 6.74732 6.78016 6.84847 6.95563 7.06002 7.15253 7.24127 7.29515 7.73656 8.20965 8.31391 8.55739 9.13210 9.88939 10.27439 11.31603 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011215 B = 0.007156 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.121089 B = 3911.660239 C = 5495.741925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.324 6.324 3 C 0.072 3.928 4 C -0.180 4.180 5 C -0.187 4.187 6 C 0.126 3.874 7 O -0.260 6.260 8 C 0.039 3.961 9 C -0.079 4.079 10 C 0.176 3.824 11 N -0.585 5.585 12 C -0.249 4.249 13 H 0.074 0.926 14 C 0.062 3.938 15 N -0.893 5.893 16 Si 0.863 3.137 17 H -0.286 1.286 18 H -0.306 1.306 19 H -0.270 1.270 20 C 0.175 3.825 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.134 4.134 25 C -0.110 4.110 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.257 0.743 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.783 -8.625 -1.136 12.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.238 6.238 3 C 0.029 3.971 4 C -0.199 4.199 5 C -0.206 4.206 6 C 0.079 3.921 7 O -0.170 6.170 8 C -0.057 4.057 9 C -0.083 4.083 10 C 0.050 3.950 11 N -0.304 5.304 12 C -0.377 4.377 13 H 0.092 0.908 14 C -0.139 4.139 15 N -0.534 5.534 16 Si 0.694 3.306 17 H -0.214 1.214 18 H -0.234 1.234 19 H -0.195 1.195 20 C 0.068 3.932 21 C -0.170 4.170 22 C -0.159 4.159 23 C -0.159 4.159 24 C -0.173 4.173 25 C -0.130 4.130 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.090 0.910 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.407 -8.557 -1.171 12.053 hybrid contribution -0.245 0.134 -0.793 0.841 sum -8.652 -8.423 -1.964 12.234 Atomic orbital electron populations 1.22896 0.79583 1.02998 1.00859 1.86028 1.20360 1.27426 1.90008 1.18765 0.92171 0.83638 1.02571 1.20762 0.98924 0.91929 1.08272 1.20953 0.93681 0.97773 1.08188 1.18885 0.90005 0.86961 0.96297 1.86600 1.32737 1.10606 1.87096 1.22863 0.95448 0.88546 0.98838 1.20076 0.98961 0.89241 1.00031 1.20199 0.86636 0.99213 0.88911 1.44113 1.73337 1.02964 1.09967 1.18442 1.36555 0.82675 1.00063 0.90839 1.25223 0.97026 0.94777 0.96843 1.69850 1.45193 0.99859 1.38489 0.87132 0.80854 0.78302 0.84336 1.21388 1.23433 1.19497 1.21373 0.91994 0.89798 0.90032 1.22689 0.98117 1.01370 0.94846 1.22058 0.96168 0.99274 0.98405 1.22046 0.95653 0.99348 0.98816 1.22741 0.97926 1.00387 0.96269 1.20035 0.90769 0.97316 1.04879 0.93188 0.93270 0.88983 0.86426 0.86039 0.93832 0.88302 0.94843 0.91378 0.93527 0.93293 0.92771 0.89680 0.93266 0.92796 0.93106 0.93071 0.92931 0.93301 0.90969 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.94 10.50 -19.68 -0.21 -5.14 16 3 C 0.07 1.23 6.68 -39.24 -0.26 0.97 16 4 C -0.18 -2.88 9.03 -39.45 -0.36 -3.24 16 5 C -0.19 -3.28 9.03 -39.45 -0.36 -3.64 16 6 C 0.13 2.60 6.66 -39.24 -0.26 2.34 16 7 O -0.26 -5.80 7.68 -19.68 -0.15 -5.95 16 8 C 0.04 0.70 9.81 101.05 0.99 1.69 16 9 C -0.08 -1.63 5.47 -104.49 -0.57 -2.20 16 10 C 0.18 3.87 4.31 -5.19 -0.02 3.85 16 11 N -0.58 -13.43 2.09 -164.71 -0.34 -13.77 16 12 C -0.25 -6.53 7.26 -15.06 -0.11 -6.64 16 13 H 0.07 2.15 7.10 -52.48 -0.37 1.77 16 14 C 0.06 1.69 4.22 -17.43 -0.07 1.62 16 15 N -0.89 -25.42 13.97 55.49 0.78 -24.64 16 16 Si 0.86 21.86 25.05 -169.99 -4.26 17.60 16 17 H -0.29 -7.22 6.69 56.52 0.38 -6.84 16 18 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.18 3.50 3.43 -65.89 -0.23 3.27 16 21 C -0.13 -2.51 6.32 -25.03 -0.16 -2.67 16 22 C -0.12 -1.91 6.80 -25.62 -0.17 -2.09 16 23 C -0.12 -1.91 6.80 -25.62 -0.17 -2.08 16 24 C -0.13 -2.52 6.41 -25.08 -0.16 -2.68 16 25 C -0.11 -2.02 9.60 -39.45 -0.38 -2.40 16 26 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 27 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.12 1.54 6.29 -52.49 -0.33 1.21 16 30 H 0.12 1.87 6.29 -52.49 -0.33 1.54 16 31 H 0.04 0.74 7.66 -51.93 -0.40 0.34 16 32 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 33 H 0.03 0.51 7.66 -51.93 -0.40 0.11 16 34 H 0.07 1.66 3.14 -51.93 -0.16 1.49 16 35 H 0.05 0.93 7.76 -51.93 -0.40 0.52 16 36 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 37 H 0.05 1.02 7.84 -51.93 -0.41 0.61 16 38 H 0.08 1.85 6.99 -51.93 -0.36 1.49 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.55 6.85 -51.93 -0.36 1.19 16 46 H 0.13 2.12 8.03 -52.49 -0.42 1.69 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -29.44 356.23 -7.40 -36.84 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.28 Total: 2.26 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.30 Total: -12.56 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.43 Total: -38.41 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.36 Total: -11.10 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.26 Total: 17.60 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.44 -7.40 -36.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123453311.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.780 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds