Wall clock time and date at job start Tue Mar 31 2020 08:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46500 * 109.46893 * 2 1 4 4 C 1.46503 * 120.00535 * 274.86770 * 3 2 1 5 5 C 1.50701 * 109.46782 * 275.94283 * 4 3 2 6 6 H 1.08003 * 120.00069 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99960 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00215 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00046 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47262 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47194 * 120.00404 * 9 7 5 12 12 H 1.48500 * 109.47592 * 240.00305 * 9 7 5 13 13 C 1.34786 * 119.99836 * 94.86314 * 3 2 1 14 14 O 1.21276 * 119.99700 * 5.30974 * 13 3 2 15 15 C 1.50699 * 119.99915 * 185.58482 * 13 3 2 16 16 C 1.53001 * 109.46636 * 179.08555 * 15 13 3 17 17 C 1.52998 * 109.47102 * 299.08547 * 15 13 3 18 18 C 1.50698 * 109.47095 * 59.08999 * 15 13 3 19 19 C 1.38263 * 119.94544 * 7.81093 * 18 15 13 20 20 C 1.38150 * 120.05545 * 179.72842 * 19 18 15 21 21 C 1.38727 * 119.94054 * 0.56468 * 20 19 18 22 22 O 1.35903 * 120.05709 * 179.68226 * 21 20 19 23 23 C 1.42903 * 116.99709 * 0.02562 * 22 21 20 24 24 C 1.38732 * 119.89200 * 359.70679 * 21 20 19 25 25 C 1.38139 * 119.94324 * 359.97438 * 24 21 20 26 26 H 1.08999 * 109.47479 * 64.91584 * 1 2 3 27 27 H 1.09006 * 109.46715 * 184.91835 * 1 2 3 28 28 H 1.08997 * 109.47388 * 304.91744 * 1 2 3 29 29 H 1.08995 * 109.46870 * 240.00761 * 2 1 3 30 30 H 1.08996 * 109.47015 * 120.00067 * 2 1 3 31 31 H 1.08994 * 109.46832 * 35.94005 * 4 3 2 32 32 H 1.08992 * 109.47022 * 155.94452 * 4 3 2 33 33 H 0.97000 * 120.00106 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.46884 * 55.07560 * 16 15 13 35 35 H 1.09003 * 109.46779 * 175.07087 * 16 15 13 36 36 H 1.08995 * 109.47453 * 295.07237 * 16 15 13 37 37 H 1.09003 * 109.47007 * 67.88564 * 17 15 13 38 38 H 1.09005 * 109.46558 * 187.87732 * 17 15 13 39 39 H 1.09000 * 109.47210 * 307.87915 * 17 15 13 40 40 H 1.07999 * 119.97168 * 359.97220 * 19 18 15 41 41 H 1.08000 * 120.02690 * 180.24631 * 20 19 18 42 42 H 1.09001 * 109.47634 * 179.97438 * 23 22 21 43 43 H 1.09005 * 109.47038 * 300.00136 * 23 22 21 44 44 H 1.09000 * 109.47354 * 59.99296 * 23 22 21 45 45 H 1.08000 * 120.02967 * 179.97438 * 24 21 20 46 46 H 1.07994 * 119.97410 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1610 2.1079 -1.2641 5 6 3.4892 1.7696 -1.8907 6 1 4.1601 1.0825 -1.3965 7 6 3.8479 2.3373 -3.0948 8 7 3.0312 3.1744 -3.6964 9 14 5.4945 1.9186 -3.8711 10 1 6.2225 0.9603 -3.0012 11 1 5.2712 1.3047 -5.2047 12 1 6.2986 3.1575 -4.0250 13 6 2.3362 1.9836 1.1631 14 8 2.3105 1.3536 2.1991 15 6 2.7176 3.4415 1.1770 16 6 3.0067 3.8792 2.6142 17 6 3.9673 3.6499 0.3192 18 6 1.5834 4.2628 0.6202 19 6 0.3669 3.6647 0.3481 20 6 -0.6762 4.4166 -0.1570 21 6 -0.4985 5.7704 -0.4023 22 8 -1.5210 6.5109 -0.9053 23 6 -2.7521 5.8304 -1.1575 24 6 0.7248 6.3670 -0.1338 25 6 1.7626 5.6121 0.3775 26 1 -0.3634 0.4357 -0.9307 27 1 -0.3633 -1.0240 0.0881 28 1 -0.3634 0.5882 0.8426 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3563 1.8208 -1.9409 32 1 2.1113 3.1800 -1.0745 33 1 3.2837 3.5741 -4.5434 34 1 3.7664 3.2281 3.0465 35 1 3.3667 4.9081 2.6152 36 1 2.0930 3.8135 3.2048 37 1 3.7230 3.4719 -0.7281 38 1 4.3245 4.6726 0.4402 39 1 4.7446 2.9538 0.6344 40 1 0.2307 2.6096 0.5344 41 1 -1.6275 3.9497 -0.3656 42 1 -3.4820 6.5352 -1.5557 43 1 -2.5845 5.0326 -1.8811 44 1 -3.1287 5.4042 -0.2277 45 1 0.8657 7.4207 -0.3243 46 1 2.7150 6.0761 0.5871 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133383751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:19 Heat of formation + Delta-G solvation = -56.271295 kcal Electronic energy + Delta-G solvation = -27126.444825 eV Core-core repulsion = 23595.311139 eV Total energy + Delta-G solvation = -3531.133686 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -42.06269 -40.59463 -38.53486 -37.03665 -35.74437 -34.61982 -32.16611 -31.73924 -30.13176 -29.12533 -28.08484 -27.80968 -25.39660 -24.92859 -23.63379 -23.21924 -21.64970 -19.65985 -19.10097 -18.41768 -17.96664 -17.33581 -17.09187 -16.58009 -16.43516 -15.88575 -15.84001 -15.34742 -14.81615 -14.75177 -14.56833 -14.41228 -14.10956 -13.98425 -13.84701 -13.55311 -13.23806 -13.16945 -13.12996 -12.91104 -12.84082 -12.73717 -12.60307 -12.54010 -12.12852 -12.01179 -11.79807 -11.75119 -11.73972 -11.56007 -11.29551 -10.61998 -10.42330 -9.86053 -9.40312 -8.91609 -8.14228 -6.24975 0.46599 0.49883 1.40036 1.44675 1.53507 1.74562 2.32461 2.43281 2.47579 2.84094 3.15092 3.59106 3.76320 3.93610 3.99771 4.15122 4.26297 4.33487 4.34649 4.38961 4.41057 4.49459 4.52662 4.60468 4.72739 4.75853 4.83756 4.85107 4.95980 4.96228 5.02823 5.04764 5.09094 5.15264 5.22230 5.25839 5.35114 5.38959 5.48927 5.69348 5.72970 5.82185 5.84189 5.91577 6.13439 6.49591 6.61801 6.86754 7.31568 7.44904 8.90098 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010892 B = 0.006422 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2570.041910 B = 4358.669314 C = 5050.793155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.103 3.897 3 N -0.595 5.595 4 C 0.241 3.759 5 C -0.534 4.534 6 H 0.048 0.952 7 C 0.029 3.971 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.521 3.479 14 O -0.594 6.594 15 C -0.031 4.031 16 C -0.114 4.114 17 C -0.161 4.161 18 C -0.104 4.104 19 C -0.090 4.090 20 C -0.206 4.206 21 C 0.114 3.886 22 O -0.332 6.332 23 C 0.019 3.981 24 C -0.155 4.155 25 C -0.071 4.071 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.005 0.995 32 H 0.066 0.934 33 H 0.266 0.734 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.042 0.958 40 H 0.116 0.884 41 H 0.140 0.860 42 H 0.124 0.876 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.147 0.853 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 5.050 5.573 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 N -0.324 5.324 4 C 0.121 3.879 5 C -0.572 4.572 6 H 0.066 0.934 7 C -0.172 4.172 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.202 1.202 13 C 0.310 3.690 14 O -0.477 6.477 15 C -0.033 4.033 16 C -0.171 4.171 17 C -0.218 4.218 18 C -0.104 4.104 19 C -0.109 4.109 20 C -0.225 4.225 21 C 0.069 3.931 22 O -0.246 6.246 23 C -0.075 4.075 24 C -0.173 4.173 25 C -0.089 4.089 26 H 0.071 0.929 27 H 0.106 0.894 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.023 0.977 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.133 0.867 41 H 0.157 0.843 42 H 0.142 0.858 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.165 0.835 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.547 5.013 5.857 10.788 hybrid contribution 0.723 -0.858 -0.850 1.407 sum -6.824 4.155 5.008 9.429 Atomic orbital electron populations 1.22036 0.94699 1.03036 1.01241 1.21414 0.95200 0.83193 1.02215 1.48268 1.62494 1.14002 1.07628 1.19573 0.94963 0.94071 0.79278 1.21561 1.03175 1.26905 1.05597 0.93366 1.25475 0.99820 0.94859 0.97061 1.70026 1.37332 1.30155 1.17471 0.85706 0.80668 0.78225 0.78309 1.19810 1.20774 1.20204 1.20761 0.75469 0.89961 0.82778 1.90546 1.56352 1.67456 1.33357 1.19619 0.95498 0.89723 0.98501 1.21628 1.01625 1.01835 0.92034 1.22463 0.94401 1.01643 1.03281 1.19407 0.93985 0.94674 1.02365 1.21140 0.92839 0.99614 0.97272 1.21258 1.00894 0.93447 1.06908 1.19127 0.88985 0.90103 0.94915 1.86012 1.21451 1.38262 1.78844 1.23301 0.83305 0.99447 1.01453 1.20588 0.90811 1.01488 1.04438 1.20896 0.99022 0.92272 0.96687 0.92892 0.89384 0.93561 0.90934 0.91198 0.97733 0.91663 0.92499 0.92621 0.89581 0.93024 0.88161 0.90649 0.93869 0.86668 0.84268 0.85833 0.92816 0.91764 0.83537 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.66 71.98 0.70 -4.02 16 2 C 0.10 3.85 6.24 86.38 0.54 4.39 16 3 N -0.59 -25.22 1.46 -826.16 -1.20 -26.43 16 4 C 0.24 11.37 3.47 85.63 0.30 11.66 16 5 C -0.53 -27.14 6.92 25.60 0.18 -26.96 16 6 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 7 C 0.03 1.48 5.34 84.65 0.45 1.93 16 8 N -0.91 -48.99 13.29 21.44 0.28 -48.71 16 9 Si 0.94 41.34 29.54 68.60 2.03 43.37 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 13 C 0.52 22.11 5.13 87.66 0.45 22.56 16 14 O -0.59 -27.27 15.40 -3.02 -0.05 -27.31 16 15 C -0.03 -1.13 0.59 -53.68 -0.03 -1.16 16 16 C -0.11 -3.60 7.66 71.98 0.55 -3.05 16 17 C -0.16 -6.16 7.25 71.98 0.52 -5.64 16 18 C -0.10 -3.71 3.03 -19.85 -0.06 -3.77 16 19 C -0.09 -3.29 7.28 22.25 0.16 -3.13 16 20 C -0.21 -6.70 9.04 22.37 0.20 -6.49 16 21 C 0.11 3.60 6.69 22.50 0.15 3.75 16 22 O -0.33 -9.34 10.50 -92.46 -0.97 -10.31 16 23 C 0.02 0.38 9.81 113.37 1.11 1.49 16 24 C -0.15 -4.74 9.99 22.36 0.22 -4.51 16 25 C -0.07 -2.24 8.94 22.25 0.20 -2.04 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.05 1.47 7.36 -2.39 -0.02 1.45 16 29 H 0.07 2.74 8.11 -2.39 -0.02 2.72 16 30 H 0.07 2.65 7.22 -2.39 -0.02 2.64 16 31 H 0.00 0.24 8.11 -2.39 -0.02 0.22 16 32 H 0.07 3.14 3.21 -2.39 -0.01 3.13 16 33 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.05 1.81 7.95 -2.39 -0.02 1.80 16 35 H 0.09 2.19 8.04 -2.39 -0.02 2.17 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 4.55 3.31 -2.39 -0.01 4.54 16 38 H 0.07 2.40 7.29 -2.38 -0.02 2.38 16 39 H 0.04 1.68 8.13 -2.39 -0.02 1.66 16 40 H 0.12 4.42 4.32 -2.91 -0.01 4.41 16 41 H 0.14 3.84 6.30 -2.91 -0.02 3.82 16 42 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.09 7.66 -2.38 -0.02 1.07 16 44 H 0.06 1.11 7.66 -2.39 -0.02 1.09 16 45 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 46 H 0.15 3.92 7.24 -2.91 -0.02 3.90 16 Total: -1.00 -61.68 357.19 6.70 -54.97 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.97 Total: 29.42 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 5.64 Total: -15.00 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -0.92 Total: -75.13 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -1.02 Total: -37.63 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -61.68 6.70 -54.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133383751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.298 kcal (2) G-P(sol) polarization free energy of solvation -61.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds