Wall clock time and date at job start Tue Mar 31 2020 08:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46897 * 109.46693 * 2 1 4 4 C 1.46901 * 111.00187 * 288.18633 * 3 2 1 5 5 C 1.50699 * 109.47482 * 160.36216 * 4 3 2 6 6 H 1.08009 * 119.99971 * 4.89536 * 5 4 3 7 7 C 1.37872 * 120.00412 * 184.89588 * 5 4 3 8 8 N 1.31517 * 120.00401 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99962 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47011 * 89.99866 * 9 7 5 11 11 H 1.48496 * 109.47377 * 210.00297 * 9 7 5 12 12 H 1.48500 * 109.46999 * 330.00383 * 9 7 5 13 13 C 1.46906 * 110.99931 * 164.23406 * 3 2 1 14 14 C 1.50704 * 109.46775 * 293.94995 * 13 3 2 15 15 C 1.38366 * 119.85064 * 270.27588 * 14 13 3 16 16 C 1.37942 * 120.14997 * 180.28451 * 15 14 13 17 17 C 1.39628 * 119.84669 * 359.44478 * 16 15 14 18 18 C 1.47725 * 120.15157 * 180.30458 * 17 16 15 19 19 O 1.21465 * 119.99700 * 359.97438 * 18 17 16 20 20 O 1.34706 * 120.00119 * 179.97438 * 18 17 16 21 21 C 1.45199 * 117.00012 * 179.97438 * 20 18 17 22 22 C 1.53004 * 109.47462 * 150.00076 * 21 20 18 23 23 C 1.53007 * 109.46620 * 269.99624 * 21 20 18 24 24 C 1.39636 * 119.70167 * 0.27605 * 17 16 15 25 25 C 1.37942 * 119.84375 * 0.02562 * 24 17 16 26 26 H 1.08999 * 109.47557 * 299.63440 * 1 2 3 27 27 H 1.08998 * 109.47275 * 59.63680 * 1 2 3 28 28 H 1.09002 * 109.47061 * 179.63114 * 1 2 3 29 29 H 1.08996 * 109.47413 * 240.00046 * 2 1 3 30 30 H 1.09000 * 109.46924 * 119.99398 * 2 1 3 31 31 H 1.09001 * 109.46909 * 280.36372 * 4 3 2 32 32 H 1.08997 * 109.47185 * 40.36281 * 4 3 2 33 33 H 0.96998 * 120.00246 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.46996 * 173.95476 * 13 3 2 35 35 H 1.08994 * 109.46988 * 53.95220 * 13 3 2 36 36 H 1.08000 * 119.92529 * 0.02562 * 15 14 13 37 37 H 1.08003 * 120.07548 * 179.72006 * 16 15 14 38 38 H 1.08990 * 109.47517 * 29.99421 * 21 20 18 39 39 H 1.08996 * 109.46889 * 59.99389 * 22 21 20 40 40 H 1.08997 * 109.47393 * 179.97438 * 22 21 20 41 41 H 1.08997 * 109.46426 * 299.99755 * 22 21 20 42 42 H 1.08993 * 109.47232 * 299.99624 * 23 21 20 43 43 H 1.08997 * 109.47229 * 60.00522 * 23 21 20 44 44 H 1.09005 * 109.46846 * 180.02562 * 23 21 20 45 45 H 1.07990 * 120.07610 * 180.02562 * 24 17 16 46 46 H 1.07998 * 119.92578 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3850 0.0000 4 6 1.7914 2.0240 -1.3029 5 6 1.8432 3.5217 -1.1439 6 1 2.1050 3.9547 -0.1897 7 6 1.5562 4.3392 -2.2163 8 7 1.6019 5.6463 -2.0777 9 14 1.1040 3.5904 -3.8669 10 1 -0.3669 3.3992 -3.9372 11 1 1.5379 4.4991 -4.9583 12 1 1.7816 2.2776 -4.0171 13 6 3.4394 1.4415 0.3726 14 6 3.6003 1.0044 1.8059 15 6 3.5279 1.9393 2.8233 16 6 3.6802 1.5470 4.1370 17 6 3.8962 0.2011 4.4396 18 6 4.0534 -0.2275 5.8446 19 8 3.9953 0.5917 6.7395 20 8 4.2611 -1.5268 6.1332 21 6 4.4072 -1.8755 7.5351 22 6 3.8985 -3.3006 7.7619 23 6 5.8829 -1.7919 7.9303 24 6 3.9623 -0.7380 3.4084 25 6 3.8146 -0.3309 2.0987 26 1 -0.3634 0.5081 0.8932 27 1 -0.3634 0.5194 -0.8867 28 1 -0.3633 -1.0277 -0.0066 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.5635 1.7062 -2.0036 32 1 0.8127 1.7328 -1.6841 33 1 1.3997 6.2214 -2.8321 34 1 3.8040 2.4626 0.2611 35 1 4.0119 0.7784 -0.2759 36 1 3.3561 2.9793 2.5881 37 1 3.6280 2.2784 4.9299 38 1 3.8280 -1.1817 8.1443 39 1 4.4777 -3.9943 7.1526 40 1 4.0085 -3.5625 8.8142 41 1 2.8472 -3.3601 7.4803 42 1 6.4621 -2.4857 7.3211 43 1 6.2453 -0.7767 7.7688 44 1 5.9927 -2.0541 8.9826 45 1 4.1287 -1.7805 3.6356 46 1 3.8651 -1.0561 1.3001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135119437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:08 Heat of formation + Delta-G solvation = -64.772495 kcal Electronic energy + Delta-G solvation = -24614.445249 eV Core-core repulsion = 21082.942923 eV Total energy + Delta-G solvation = -3531.502326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.72047 -39.21328 -37.13624 -36.59983 -33.50570 -32.65421 -31.98907 -30.95636 -30.11054 -27.81432 -27.64244 -25.53371 -23.27000 -22.87088 -22.12544 -21.45830 -20.52753 -19.74376 -18.19474 -17.05369 -16.88849 -16.16618 -15.64037 -15.16428 -15.06374 -14.85521 -14.35381 -14.21987 -13.93626 -13.60264 -13.47288 -13.44559 -13.37735 -12.76641 -12.66569 -12.53387 -12.37602 -12.15678 -11.99167 -11.86383 -11.49115 -11.30438 -11.16704 -11.15535 -10.85661 -10.80419 -10.76970 -10.53405 -10.49444 -10.10026 -9.87429 -9.37110 -8.88980 -8.74099 -8.57700 -7.44667 -6.07208 -4.04252 0.73618 1.46010 2.48660 2.53920 3.25901 3.33958 3.34935 3.82556 4.39568 4.44818 4.51913 4.57708 4.77247 4.80391 4.89151 5.00823 5.07577 5.16558 5.25479 5.33075 5.36378 5.41627 5.47620 5.54001 5.55032 5.67925 5.70906 5.79706 5.84456 5.90940 5.96496 6.12134 6.14521 6.24472 6.30953 6.33189 6.43217 6.47972 6.66062 6.72427 6.82771 6.87993 6.96275 7.59245 7.67780 7.84551 7.95592 8.62764 9.01754 9.54571 11.05917 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.028668 B = 0.002709 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.476070 B =10332.962079 C =10859.225176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 N -0.519 5.519 4 C 0.161 3.839 5 C -0.507 4.507 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.899 5.899 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 C 0.089 3.911 14 C -0.021 4.021 15 C -0.107 4.107 16 C -0.054 4.054 17 C -0.142 4.142 18 C 0.513 3.487 19 O -0.511 6.511 20 O -0.350 6.350 21 C 0.080 3.920 22 C -0.149 4.149 23 C -0.170 4.170 24 C -0.064 4.064 25 C -0.134 4.134 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.022 0.978 30 H 0.068 0.932 31 H -0.011 1.011 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.100 0.900 35 H 0.034 0.966 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.132 0.868 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 -17.875 15.087 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 N -0.243 5.243 4 C 0.035 3.965 5 C -0.545 4.545 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.538 5.538 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.194 1.194 13 C -0.038 4.038 14 C -0.022 4.022 15 C -0.125 4.125 16 C -0.072 4.072 17 C -0.143 4.143 18 C 0.359 3.641 19 O -0.401 6.401 20 O -0.268 6.268 21 C 0.025 3.975 22 C -0.207 4.207 23 C -0.227 4.227 24 C -0.083 4.083 25 C -0.153 4.153 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.006 0.994 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.157 0.843 37 H 0.152 0.848 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.150 0.850 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.877 -17.224 15.614 23.979 hybrid contribution 0.131 -0.674 -1.442 1.598 sum 6.007 -17.898 14.171 23.606 Atomic orbital electron populations 1.21744 0.95394 1.00105 1.02912 1.22194 0.96228 0.90780 0.99585 1.62018 1.14624 1.14433 1.33263 1.20241 0.95507 0.96005 0.84716 1.21018 1.46586 0.88124 0.98807 0.90117 1.24892 0.95214 0.94716 0.98493 1.69888 1.49637 1.02802 1.31499 0.86904 0.79231 0.79425 0.84427 1.20166 1.21203 1.19376 1.21131 0.90513 1.02650 0.89541 1.20387 0.92273 0.92886 0.96673 1.21147 0.99292 1.00952 0.91140 1.21264 0.94698 0.93952 0.97278 1.19009 1.11174 0.94927 0.89222 1.21301 0.72348 0.80489 0.89977 1.90801 1.47424 1.53210 1.48652 1.86611 1.82408 1.27565 1.30170 1.22729 0.97622 0.97652 0.79473 1.21890 1.02183 0.94137 1.02449 1.22214 0.95202 1.03149 1.02170 1.21316 0.95794 0.99178 0.91974 1.21083 1.02192 0.95786 0.96218 0.92076 0.92409 0.93445 0.96010 0.91357 0.99352 0.95290 0.92663 0.88211 0.94747 0.84270 0.84763 0.89686 0.91351 0.90395 0.91590 0.91503 0.91882 0.90741 0.84971 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.98 37.16 0.37 -1.91 16 2 C 0.04 0.67 5.52 -3.83 -0.02 0.65 16 3 N -0.52 -10.26 4.37 -237.52 -1.04 -11.30 16 4 C 0.16 3.75 3.66 -4.98 -0.02 3.73 16 5 C -0.51 -13.91 9.17 -34.44 -0.32 -14.22 16 6 H 0.08 2.40 7.90 -52.48 -0.41 1.99 16 7 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 9 Si 0.87 21.07 27.37 -169.99 -4.65 16.42 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.25 6.69 56.52 0.38 -5.87 16 13 C 0.09 1.56 4.94 -4.97 -0.02 1.54 16 14 C -0.02 -0.32 4.94 -104.53 -0.52 -0.84 16 15 C -0.11 -1.60 9.68 -39.64 -0.38 -1.98 16 16 C -0.05 -0.75 9.60 -39.17 -0.38 -1.13 16 17 C -0.14 -1.92 5.87 -104.98 -0.62 -2.54 16 18 C 0.51 7.00 7.87 34.61 0.27 7.28 16 19 O -0.51 -8.01 15.61 -19.24 -0.30 -8.31 16 20 O -0.35 -4.07 9.13 -40.51 -0.37 -4.44 16 21 C 0.08 0.73 3.19 -26.73 -0.09 0.65 16 22 C -0.15 -0.97 9.57 37.16 0.36 -0.61 16 23 C -0.17 -1.34 9.55 37.16 0.35 -0.98 16 24 C -0.06 -0.78 9.62 -39.17 -0.38 -1.16 16 25 C -0.13 -1.72 7.82 -39.64 -0.31 -2.03 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.00 6.52 -51.93 -0.34 0.66 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 30 H 0.07 1.01 5.13 -51.93 -0.27 0.74 16 31 H -0.01 -0.26 7.40 -51.93 -0.38 -0.65 16 32 H 0.03 0.68 5.39 -51.93 -0.28 0.40 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.10 1.93 7.26 -51.93 -0.38 1.55 16 35 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 36 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.13 1.80 7.65 -52.48 -0.40 1.40 16 38 H 0.09 0.86 7.16 -51.93 -0.37 0.49 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.13 1.33 7.61 -52.49 -0.40 0.93 16 46 H 0.13 1.41 7.73 -52.49 -0.41 1.01 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -30.99 375.14 -9.16 -40.15 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.44 Total: -0.17 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -1.79 Total: -11.74 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.27 Total: -37.57 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.67 Total: -12.75 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.65 Total: 16.42 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.99 -9.16 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135119437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.620 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds