Wall clock time and date at job start Tue Mar 31 2020 09:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42898 * 113.99707 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47285 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.47267 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47005 * 180.02562 * 6 5 4 8 8 O 1.21290 * 120.00067 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00181 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00556 * 180.02562 * 9 7 6 11 11 H 1.09009 * 109.46624 * 324.99750 * 10 9 7 12 12 C 1.52996 * 109.47466 * 205.00158 * 10 9 7 13 13 C 1.50702 * 109.47159 * 64.99479 * 12 10 9 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 10 15 15 C 1.37884 * 119.99942 * 179.72211 * 13 12 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48501 * 109.47188 * 90.00793 * 17 15 13 19 19 H 1.48501 * 109.47085 * 210.00372 * 17 15 13 20 20 H 1.48498 * 109.47634 * 330.00608 * 17 15 13 21 21 C 1.50700 * 109.47471 * 84.99708 * 10 9 7 22 22 C 1.38233 * 119.99377 * 39.72808 * 21 10 9 23 23 C 1.38237 * 119.99600 * 179.78842 * 22 21 10 24 24 C 1.38241 * 119.99990 * 0.44354 * 23 22 21 25 25 C 1.38237 * 119.99716 * 359.81238 * 24 23 22 26 26 C 1.38228 * 120.00326 * 220.00479 * 21 10 9 27 27 H 1.08995 * 109.47490 * 299.99673 * 1 2 3 28 28 H 1.09000 * 109.47337 * 60.00251 * 1 2 3 29 29 H 1.08999 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46975 * 240.00287 * 2 1 3 31 31 H 1.08996 * 109.46942 * 120.00011 * 2 1 3 32 32 H 1.09003 * 109.46886 * 60.00361 * 4 3 2 33 33 H 1.08995 * 109.47293 * 300.00378 * 4 3 2 34 34 H 1.09003 * 109.46697 * 60.00450 * 5 4 3 35 35 H 1.09000 * 109.47045 * 300.00751 * 5 4 3 36 36 H 1.09003 * 109.46827 * 60.00613 * 6 5 4 37 37 H 1.08995 * 109.47370 * 300.00619 * 6 5 4 38 38 H 0.97002 * 120.00072 * 359.97438 * 9 7 6 39 39 H 1.09004 * 109.47066 * 304.99682 * 12 10 9 40 40 H 1.08994 * 109.47405 * 184.99512 * 12 10 9 41 41 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 42 42 H 1.07995 * 120.00514 * 359.97438 * 22 21 10 43 43 H 1.08001 * 120.00058 * 180.28006 * 23 22 21 44 44 H 1.07995 * 120.00194 * 179.83256 * 24 23 22 45 45 H 1.08001 * 119.99824 * 180.02562 * 25 24 23 46 46 H 1.08005 * 119.99906 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 -0.0001 6 6 5.3505 3.0593 0.0012 7 6 5.7390 4.5153 0.0011 8 8 4.8805 5.3721 0.0006 9 7 7.0405 4.8655 0.0016 10 6 7.4182 6.2810 0.0021 11 1 6.6987 6.8492 -0.5875 12 6 8.8130 6.4369 -0.6071 13 6 8.7749 6.0349 -2.0590 14 1 7.8484 5.7019 -2.5030 15 6 9.9215 6.0981 -2.8222 16 7 11.0496 6.5039 -2.2816 17 14 9.8724 5.6071 -4.6238 18 1 9.5530 6.7971 -5.4526 19 1 11.1954 5.0650 -5.0253 20 1 8.8301 4.5689 -4.8258 21 6 7.4277 6.7980 1.4176 22 6 7.9186 6.0065 2.4391 23 6 7.9313 6.4824 3.7369 24 6 7.4446 7.7461 4.0146 25 6 6.9488 8.5354 2.9938 26 6 6.9401 8.0612 1.6954 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8339 0.9766 -0.8892 33 1 3.8332 0.9768 0.8907 34 1 3.4222 3.4225 0.8895 35 1 3.4228 3.4215 -0.8905 36 1 5.7540 2.5752 -0.8882 37 1 5.7525 2.5763 0.8917 38 1 7.7271 4.1804 0.0024 39 1 9.5166 5.7991 -0.0719 40 1 9.1308 7.4763 -0.5261 41 1 11.8564 6.5480 -2.8184 42 1 8.2951 5.0177 2.2229 43 1 8.3191 5.8658 4.5344 44 1 7.4520 8.1169 5.0289 45 1 6.5689 9.5229 3.2106 46 1 6.5528 8.6780 0.8978 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153477081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:51:28 Heat of formation + Delta-G solvation = -86.347201 kcal Electronic energy + Delta-G solvation = -24442.808543 eV Core-core repulsion = 20910.370668 eV Total energy + Delta-G solvation = -3532.437875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.66571 -38.55842 -38.08581 -35.26868 -33.73925 -32.73636 -31.41886 -30.85347 -30.43614 -28.83815 -26.77861 -24.76188 -23.00150 -22.31411 -22.05115 -21.81723 -20.07200 -19.63662 -17.19899 -16.77084 -16.55387 -16.29174 -16.15206 -15.44537 -15.23088 -14.76331 -14.58936 -14.37068 -13.97025 -13.94362 -13.12787 -13.05282 -12.92238 -12.84266 -12.53996 -12.38757 -12.11366 -11.94327 -11.70736 -11.62272 -11.47551 -11.12925 -11.03400 -10.92212 -10.81094 -10.73350 -10.60813 -10.45612 -9.78346 -9.74535 -9.38593 -9.26037 -8.54123 -8.46520 -8.39469 -8.17257 -6.10282 -4.13749 1.79004 1.81155 3.15548 3.26515 3.33612 3.36331 3.37257 3.90037 4.25933 4.38880 4.78678 4.87269 4.94972 4.98931 5.09466 5.17541 5.25945 5.26666 5.28083 5.30401 5.36027 5.41507 5.49344 5.51088 5.57557 5.65220 5.73429 5.85694 5.91708 5.95047 6.14746 6.19222 6.31510 6.36910 6.45045 6.59142 6.85328 6.86308 6.93977 7.07371 7.12374 7.41451 7.48864 7.62707 7.86551 8.15517 8.25471 8.80411 8.92277 9.51317 11.00266 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008613 B = 0.003916 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3250.225680 B = 7149.089707 C = 9866.928630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.389 6.389 4 C 0.063 3.937 5 C -0.101 4.101 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.550 6.550 9 N -0.701 5.701 10 C 0.184 3.816 11 H 0.086 0.914 12 C 0.024 3.976 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.070 4.070 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.123 4.123 26 C -0.108 4.108 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.401 0.599 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.262 0.738 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 -9.835 9.151 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.309 6.309 4 C -0.014 4.014 5 C -0.139 4.139 6 C -0.179 4.179 7 C 0.296 3.704 8 O -0.428 6.428 9 N -0.350 5.350 10 C 0.079 3.921 11 H 0.104 0.896 12 C -0.013 4.013 13 C -0.558 4.558 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.072 4.072 22 C -0.127 4.127 23 C -0.144 4.144 24 C -0.154 4.154 25 C -0.141 4.141 26 C -0.127 4.127 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.235 0.765 39 H 0.042 0.958 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.092 -9.027 9.093 17.618 hybrid contribution 0.772 -0.817 -1.007 1.509 sum -11.320 -9.844 8.086 17.042 Atomic orbital electron populations 1.21744 0.93864 1.02074 1.03228 1.22440 0.95571 0.84062 0.99935 1.87903 1.21414 1.26124 1.95410 1.22535 0.81002 0.97800 1.00021 1.21190 0.93776 0.94096 1.04850 1.21537 0.97051 0.94954 1.04342 1.20437 0.82974 0.90781 0.76211 1.90671 1.49591 1.52232 1.50284 1.45984 1.06646 1.08985 1.73431 1.20231 1.01027 0.80570 0.90232 0.89584 1.19387 0.87921 0.98535 0.95506 1.21142 0.95285 1.44652 0.94760 0.92381 1.24996 0.95515 0.95216 0.98453 1.69962 0.99844 1.46971 1.36315 0.86589 0.77251 0.78866 0.85277 1.20622 1.21257 1.19885 1.20561 0.95770 0.94245 0.96594 1.20902 0.99604 0.99765 0.92406 1.21043 1.00623 0.96161 0.96525 1.20995 1.00734 0.94960 0.98670 1.21045 1.00456 0.99492 0.93087 1.21023 0.99300 0.95831 0.96537 0.91843 0.91811 0.91244 0.93495 0.93547 0.93282 0.93401 0.90484 0.90326 0.88780 0.89170 0.76491 0.95754 0.94820 0.92864 0.86576 0.86753 0.86850 0.86607 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.06 0.51 6.66 37.16 0.25 0.75 16 3 O -0.39 -4.76 10.34 -35.23 -0.36 -5.12 16 4 C 0.06 0.68 5.94 37.16 0.22 0.90 16 5 C -0.10 -1.31 4.87 -26.73 -0.13 -1.44 16 6 C -0.14 -1.72 5.70 -27.88 -0.16 -1.88 16 7 C 0.51 8.80 7.79 -10.99 -0.09 8.72 16 8 O -0.55 -11.53 15.65 5.55 0.09 -11.44 16 9 N -0.70 -12.39 4.02 -54.93 -0.22 -12.61 16 10 C 0.18 3.74 2.12 -69.08 -0.15 3.59 16 11 H 0.09 1.93 7.44 -51.92 -0.39 1.55 16 12 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 13 C -0.52 -13.69 8.84 -34.44 -0.30 -13.99 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 17 Si 0.89 20.93 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.07 -1.32 4.91 -104.63 -0.51 -1.83 16 22 C -0.11 -1.82 9.33 -39.58 -0.37 -2.19 16 23 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 24 C -0.14 -1.95 10.05 -39.58 -0.40 -2.34 16 25 C -0.12 -1.88 10.05 -39.59 -0.40 -2.27 16 26 C -0.11 -1.91 9.67 -39.59 -0.38 -2.30 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 6.38 8.60 -40.82 -0.35 6.03 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.12 1.80 7.71 -52.49 -0.40 1.39 16 43 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 46 H 0.12 2.04 8.04 -52.48 -0.42 1.62 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -31.83 388.12 -9.46 -41.29 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.87 Total: 6.25 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.66 Total: -15.36 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.52 Total: -37.38 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.28 Total: -16.56 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.83 -9.46 -41.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153477081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.056 kcal (2) G-P(sol) polarization free energy of solvation -31.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds