Wall clock time and date at job start Tue Mar 31 2020 10:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00231 * 2 1 4 4 N 1.46895 * 109.47239 * 124.99979 * 3 2 1 5 5 C 1.46909 * 110.99787 * 66.04809 * 4 3 2 6 6 C 1.46898 * 111.00212 * 189.99853 * 4 3 2 7 7 C 1.50700 * 109.47526 * 170.00206 * 6 4 3 8 8 C 1.38246 * 119.92759 * 90.00118 * 7 6 4 9 9 C 1.38242 * 120.14884 * 180.02562 * 8 7 6 10 10 C 1.38565 * 119.99815 * 359.97438 * 9 8 7 11 11 O 1.35996 * 120.07637 * 179.97438 * 10 9 8 12 12 C 1.42898 * 116.99713 * 0.02562 * 11 10 9 13 13 C 1.39160 * 119.85398 * 0.02562 * 10 9 8 14 14 O 1.35995 * 120.07175 * 180.02562 * 13 10 9 15 15 C 1.42903 * 116.99587 * 180.02562 * 14 13 10 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46725 * 60.00093 * 21 19 17 23 23 H 1.48505 * 109.46988 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47116 * 300.00069 * 21 19 17 25 25 C 1.38248 * 119.92374 * 270.25810 * 7 6 4 26 26 H 1.07994 * 119.99776 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.00003 * 180.02562 * 1 2 3 28 28 H 1.08011 * 119.99630 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46872 * 5.00108 * 3 2 1 30 30 H 1.08999 * 109.46860 * 245.00240 * 3 2 1 31 31 H 1.08999 * 109.46613 * 183.95635 * 5 4 3 32 32 H 1.08995 * 109.46850 * 303.95061 * 5 4 3 33 33 H 1.08997 * 109.47359 * 63.95704 * 5 4 3 34 34 H 1.09000 * 109.46733 * 49.99842 * 6 4 3 35 35 H 1.09000 * 109.47115 * 290.00437 * 6 4 3 36 36 H 1.08004 * 119.92680 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.00411 * 179.97438 * 9 8 7 38 38 H 1.09005 * 109.47392 * 300.00389 * 12 11 10 39 39 H 1.09002 * 109.46922 * 59.99615 * 12 11 10 40 40 H 1.09000 * 109.47236 * 180.02562 * 12 11 10 41 41 H 1.09002 * 109.47382 * 60.00075 * 15 14 13 42 42 H 1.09001 * 109.46938 * 300.00061 * 15 14 13 43 43 H 1.09001 * 109.47194 * 299.99575 * 16 15 14 44 44 H 1.08992 * 109.47399 * 59.99748 * 16 15 14 45 45 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 46 46 H 1.07994 * 120.00428 * 0.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9963 1.3319 1.1345 5 6 4.0495 0.3203 0.9741 6 6 3.5748 2.6709 1.3089 7 6 4.3274 2.7271 2.6133 8 6 5.6689 2.3950 2.6504 9 6 6.3636 2.4444 3.8446 10 6 5.7155 2.8280 5.0077 11 8 6.3973 2.8767 6.1834 12 6 7.7804 2.5195 6.1465 13 6 4.3652 3.1623 4.9703 14 8 3.7249 3.5398 6.1092 15 6 2.3387 3.8682 5.9955 16 6 1.7948 4.2666 7.3690 17 6 0.3328 4.6122 7.2493 18 1 -0.1590 4.5539 6.2896 19 6 -0.3768 5.0028 8.3651 20 7 0.2220 5.0732 9.5339 21 14 -2.1888 5.4319 8.2167 22 1 -2.9367 4.2531 7.7102 23 1 -2.7170 5.8173 9.5500 24 1 -2.3532 6.5657 7.2719 25 6 3.6735 3.1055 3.7710 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4025 -0.9314 31 1 4.6849 0.3139 1.8598 32 1 3.5937 -0.6616 0.8469 33 1 4.6512 0.5580 0.0970 34 1 2.7766 3.4131 1.3176 35 1 4.2578 2.8816 0.4859 36 1 6.1751 2.0954 1.7446 37 1 7.4114 2.1841 3.8710 38 1 7.8815 1.4939 5.7915 39 1 8.3112 3.1914 5.4720 40 1 8.2034 2.6004 7.1479 41 1 1.7896 3.0030 5.6239 42 1 2.2181 4.7004 5.3020 43 1 1.9154 3.4346 8.0629 44 1 2.3439 5.1318 7.7402 45 1 -0.2773 5.3476 10.3189 46 1 2.6244 3.3600 3.7402 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154788891.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:46 Heat of formation + Delta-G solvation = -27.875905 kcal Electronic energy + Delta-G solvation = -24621.452064 eV Core-core repulsion = 21091.549695 eV Total energy + Delta-G solvation = -3529.902370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.34591 -38.43073 -38.02021 -36.43455 -33.66800 -33.26707 -30.85605 -30.54031 -29.28859 -27.66484 -27.38468 -25.96110 -24.97631 -22.75597 -22.29971 -20.97065 -20.38119 -19.80999 -18.18676 -16.95293 -16.43004 -16.21675 -15.92728 -15.74829 -15.34524 -15.14305 -14.91804 -14.56249 -14.42313 -14.27950 -13.86911 -13.53525 -13.08412 -12.84446 -12.57135 -12.26507 -12.19569 -12.07133 -11.78254 -11.74239 -11.47435 -11.37189 -11.08464 -10.99350 -10.87682 -10.76637 -10.73913 -10.49002 -9.76802 -9.66507 -9.59226 -9.24041 -8.51791 -8.43145 -8.38190 -7.44593 -6.03964 -4.08373 1.44536 1.59975 2.10319 3.32884 3.36895 3.38871 3.45423 3.71347 3.86918 4.17007 4.45782 4.61780 4.77101 4.83891 4.94689 5.03958 5.14074 5.15587 5.18434 5.23070 5.25842 5.32182 5.40704 5.45803 5.49536 5.54633 5.62185 5.64245 5.70181 5.83784 5.87872 6.11888 6.13892 6.34812 6.36004 6.42347 6.56330 6.64317 6.76483 6.85984 6.90286 6.92380 7.37365 7.62102 7.73176 7.90016 8.17131 8.31277 8.97152 9.55390 11.07629 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.004072 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.856198 B = 6874.086665 C = 9804.590210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.149 4.149 3 C 0.080 3.920 4 N -0.532 5.532 5 C 0.020 3.980 6 C 0.099 3.901 7 C -0.077 4.077 8 C -0.125 4.125 9 C -0.175 4.175 10 C 0.089 3.911 11 O -0.303 6.303 12 C 0.028 3.972 13 C 0.119 3.881 14 O -0.305 6.305 15 C 0.065 3.935 16 C 0.027 3.973 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.155 4.155 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.586 -8.549 -19.336 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.167 4.167 3 C -0.047 4.047 4 N -0.256 5.256 5 C -0.128 4.128 6 C -0.028 4.028 7 C -0.078 4.078 8 C -0.144 4.144 9 C -0.194 4.194 10 C 0.044 3.956 11 O -0.216 6.216 12 C -0.067 4.067 13 C 0.072 3.928 14 O -0.218 6.218 15 C -0.009 4.009 16 C -0.011 4.011 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.528 5.528 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.175 4.175 26 H 0.116 0.884 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.116 0.884 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.284 -8.529 -18.321 23.146 hybrid contribution -0.438 0.267 -1.001 1.125 sum 10.846 -8.261 -19.322 23.648 Atomic orbital electron populations 1.23836 0.95814 1.01992 1.00314 1.22793 0.95917 0.97904 1.00079 1.21262 0.95215 0.96542 0.91673 1.62009 1.17582 1.04863 1.41112 1.22500 0.94003 0.95625 1.00694 1.20994 0.97450 0.90585 0.93734 1.19275 0.93382 1.00786 0.94312 1.20545 0.93847 1.03002 0.97053 1.20889 1.00139 1.06468 0.91933 1.18337 0.89696 1.01799 0.85794 1.86247 1.22879 1.83898 1.28588 1.23006 0.80594 0.99498 1.03606 1.18449 0.89486 0.97501 0.87349 1.86279 1.26568 1.80358 1.28590 1.23331 0.76229 0.98280 1.03107 1.19100 0.95146 0.97794 0.89014 1.20946 0.94057 1.46571 0.94780 0.92424 1.24979 0.98623 0.95344 0.95186 1.69970 1.36550 1.47127 0.99156 0.86566 0.84735 0.78930 0.77243 1.20092 1.21154 1.20123 1.21005 1.00639 1.04969 0.90846 0.88438 0.88412 0.87506 0.90179 0.94152 0.90600 0.91453 0.95893 0.89835 0.94015 0.86500 0.85335 0.93097 0.93096 0.88448 0.93097 0.93292 0.95399 0.95431 0.92708 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 14.32 29.01 0.42 -1.21 16 2 C -0.15 -1.38 9.19 -36.03 -0.33 -1.72 16 3 C 0.08 0.76 5.40 -4.98 -0.03 0.73 16 4 N -0.53 -5.95 4.74 -245.83 -1.17 -7.12 16 5 C 0.02 0.19 8.96 60.07 0.54 0.73 16 6 C 0.10 1.10 5.11 -4.98 -0.03 1.08 16 7 C -0.08 -1.03 4.88 -104.62 -0.51 -1.54 16 8 C -0.13 -1.52 7.95 -39.58 -0.31 -1.84 16 9 C -0.18 -2.28 9.04 -39.46 -0.36 -2.64 16 10 C 0.09 1.49 6.70 -39.12 -0.26 1.22 16 11 O -0.30 -5.07 10.28 -34.23 -0.35 -5.42 16 12 C 0.03 0.30 9.81 101.05 0.99 1.30 16 13 C 0.12 2.24 6.70 -39.12 -0.26 1.98 16 14 O -0.30 -6.78 9.92 -34.23 -0.34 -7.12 16 15 C 0.06 1.45 4.68 37.16 0.17 1.63 16 16 C 0.03 0.72 5.34 -27.88 -0.15 0.57 16 17 C -0.53 -14.97 9.11 -34.44 -0.31 -15.28 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 21 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.16 -2.53 8.69 -39.46 -0.34 -2.87 16 26 H 0.10 0.84 7.84 -52.49 -0.41 0.43 16 27 H 0.10 0.77 8.06 -52.48 -0.42 0.35 16 28 H 0.11 0.92 6.87 -52.48 -0.36 0.56 16 29 H 0.08 0.75 7.58 -51.93 -0.39 0.35 16 30 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.08 0.81 6.16 -51.93 -0.32 0.49 16 32 H 0.07 0.61 6.49 -51.93 -0.34 0.27 16 33 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 35 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 36 H 0.12 1.12 8.03 -52.48 -0.42 0.70 16 37 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 38 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 39 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 1.10 7.65 -51.93 -0.40 0.70 16 42 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.14 2.25 6.30 -52.49 -0.33 1.92 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -32.49 377.42 -8.73 -41.22 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.40 Total: -1.38 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -0.87 Total: -16.19 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: -0.43 Total: -33.36 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.69 Total: -12.54 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.49 -8.73 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154788891.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.341 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds