Wall clock time and date at job start Tue Mar 31 2020 08:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46494 * 109.47082 * 2 1 4 4 C 1.46502 * 120.00505 * 264.60941 * 3 2 1 5 5 C 1.50695 * 109.47315 * 273.97650 * 4 3 2 6 6 H 1.07999 * 120.00031 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99950 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00264 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99939 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47014 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46906 * 120.00197 * 9 7 5 12 12 H 1.48500 * 109.46771 * 240.00326 * 9 7 5 13 13 C 1.34776 * 119.99756 * 84.61339 * 3 2 1 14 14 O 1.21286 * 120.00399 * 5.84156 * 13 3 2 15 15 C 1.50708 * 120.00088 * 185.83782 * 13 3 2 16 16 H 1.09001 * 109.46616 * 35.46234 * 15 13 3 17 17 C 1.52995 * 109.47108 * 275.46334 * 15 13 3 18 18 C 1.52997 * 109.47167 * 155.46483 * 15 13 3 19 19 C 1.50696 * 109.47221 * 185.00285 * 18 15 13 20 20 C 1.38266 * 119.94456 * 269.72499 * 19 18 15 21 21 C 1.38141 * 120.05663 * 179.71978 * 20 19 18 22 22 C 1.38736 * 119.94496 * 0.55295 * 21 20 19 23 23 O 1.35899 * 120.05729 * 179.74296 * 22 21 20 24 24 C 1.42900 * 116.99893 * 359.97438 * 23 22 21 25 25 C 1.38727 * 119.88818 * 359.72352 * 22 21 20 26 26 C 1.38150 * 119.94436 * 359.97438 * 25 22 21 27 27 H 1.09004 * 109.47427 * 64.71789 * 1 2 3 28 28 H 1.09000 * 109.47617 * 184.72063 * 1 2 3 29 29 H 1.09003 * 109.47308 * 304.72017 * 1 2 3 30 30 H 1.08996 * 109.46822 * 240.00164 * 2 1 3 31 31 H 1.08999 * 109.46886 * 120.00400 * 2 1 3 32 32 H 1.09004 * 109.46611 * 33.97708 * 4 3 2 33 33 H 1.08993 * 109.47113 * 153.97226 * 4 3 2 34 34 H 0.96992 * 120.00271 * 179.97438 * 8 7 5 35 35 H 1.09007 * 109.47187 * 52.71902 * 17 15 13 36 36 H 1.08995 * 109.47493 * 292.71805 * 17 15 13 37 37 H 1.09003 * 109.47386 * 172.71088 * 17 15 13 38 38 H 1.09002 * 109.47209 * 305.00201 * 18 15 13 39 39 H 1.08992 * 109.47415 * 65.00173 * 18 15 13 40 40 H 1.08002 * 119.97249 * 0.02562 * 20 19 18 41 41 H 1.08005 * 120.02845 * 180.27053 * 21 20 19 42 42 H 1.09003 * 109.46995 * 299.99390 * 24 23 22 43 43 H 1.08994 * 109.47412 * 59.99723 * 24 23 22 44 44 H 1.09001 * 109.47144 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.03250 * 179.97438 * 25 22 21 46 46 H 1.07996 * 119.97288 * 179.97438 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3748 2.0322 -1.2631 5 6 3.8034 1.7031 -1.6121 6 1 4.3875 1.0724 -0.9582 7 6 4.3647 2.2071 -2.7662 8 7 3.6537 2.9754 -3.5621 9 14 6.1354 1.7985 -3.1992 10 1 6.7123 0.9220 -2.1484 11 1 6.1756 1.0955 -4.5066 12 1 6.9255 3.0528 -3.2869 13 6 2.1395 2.0530 1.1621 14 8 1.9466 1.4830 2.2151 15 6 2.5150 3.5125 1.1531 16 1 2.0620 3.9988 0.2891 17 6 4.0370 3.6471 1.0742 18 6 2.0101 4.1769 2.4354 19 6 2.2765 5.6588 2.3718 20 6 3.4667 6.1676 2.8579 21 6 3.7158 7.5249 2.7955 22 6 2.7656 8.3792 2.2550 23 8 3.0060 9.7155 2.1973 24 6 4.2584 10.1721 2.7120 25 6 1.5697 7.8670 1.7732 26 6 1.3281 6.5081 1.8322 27 1 -0.3634 0.4389 -0.9292 28 1 -0.3634 -1.0241 0.0846 29 1 -0.3634 0.5853 0.8447 30 1 1.8932 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.7159 1.6750 -2.0545 33 1 2.2656 3.1116 -1.1589 34 1 4.0487 3.3303 -4.3738 35 1 4.4101 3.0649 0.2315 36 1 4.4829 3.2768 1.9973 37 1 4.3025 4.6954 0.9374 38 1 0.9386 4.0044 2.5364 39 1 2.5291 3.7510 3.2940 40 1 4.2045 5.5026 3.2821 41 1 4.6475 7.9213 3.1713 42 1 4.3369 9.9058 3.7661 43 1 5.0716 9.7040 2.1574 44 1 4.3222 11.2550 2.6049 45 1 0.8283 8.5299 1.3524 46 1 0.3971 6.1089 1.4577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158599017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:01 Heat of formation + Delta-G solvation = -65.874905 kcal Electronic energy + Delta-G solvation = -25439.529058 eV Core-core repulsion = 21907.978928 eV Total energy + Delta-G solvation = -3531.550130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.64 seconds Orbital eigenvalues (eV) -40.18141 -39.32362 -37.68537 -35.20660 -34.20653 -32.72728 -31.03318 -30.76840 -29.59120 -27.58323 -27.03877 -25.88720 -23.81475 -22.99609 -22.52912 -21.76775 -20.35767 -18.14759 -17.94798 -16.56444 -16.42328 -16.18922 -15.79404 -15.52407 -15.07108 -14.60350 -14.33716 -14.19239 -13.76509 -13.55783 -13.42951 -13.19313 -12.94218 -12.57450 -12.46002 -12.12356 -11.93965 -11.81480 -11.57647 -11.54031 -11.44504 -11.17511 -11.06218 -10.89281 -10.85463 -10.75490 -10.50701 -10.38426 -10.30460 -10.03682 -9.68601 -8.94772 -8.83161 -8.52985 -7.96188 -7.67515 -6.18832 -4.24919 1.43834 1.51643 3.20565 3.23756 3.29571 3.32908 3.47428 3.79928 4.04590 4.33277 4.79541 4.91417 5.00079 5.02563 5.04576 5.13601 5.30298 5.37594 5.44533 5.47757 5.54939 5.64952 5.69667 5.76788 5.85386 5.90450 6.01694 6.05607 6.20605 6.29210 6.30229 6.37737 6.43734 6.44626 6.52433 6.60692 6.66670 6.83065 6.84224 6.87559 7.07660 7.23536 7.40144 7.58495 7.76352 8.06341 8.40010 8.80128 9.07290 9.41846 10.87727 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011714 B = 0.004318 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.644558 B = 6482.317686 C = 8025.756526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.596 5.596 4 C 0.235 3.765 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.521 3.479 14 O -0.578 6.578 15 C -0.096 4.096 16 H 0.095 0.905 17 C -0.149 4.149 18 C -0.059 4.059 19 C -0.104 4.104 20 C -0.073 4.073 21 C -0.206 4.206 22 C 0.114 3.886 23 O -0.321 6.321 24 C 0.029 3.971 25 C -0.149 4.149 26 C -0.077 4.077 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.127 0.873 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 8.941 9.888 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.326 5.326 4 C 0.115 3.885 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.309 3.691 14 O -0.459 6.459 15 C -0.117 4.117 16 H 0.113 0.887 17 C -0.206 4.206 18 C -0.097 4.097 19 C -0.104 4.104 20 C -0.091 4.091 21 C -0.225 4.225 22 C 0.070 3.930 23 O -0.235 6.235 24 C -0.067 4.067 25 C -0.168 4.168 26 C -0.095 4.095 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.145 0.855 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.047 8.890 10.144 13.643 hybrid contribution 1.321 -0.152 -0.498 1.419 sum -0.727 8.738 9.647 13.036 Atomic orbital electron populations 1.22110 0.97009 1.01177 1.01787 1.21199 0.93187 0.84091 1.02356 1.48257 1.62634 1.13152 1.08512 1.19493 0.95806 0.93769 0.79455 1.21480 0.97217 1.31500 1.06986 0.91993 1.24922 0.98046 0.94774 0.95937 1.69922 1.36642 1.32975 1.13168 0.86524 0.84658 0.78353 0.78490 1.19621 1.20866 1.20803 1.20484 0.76247 0.89012 0.83328 1.90568 1.53448 1.70524 1.31372 1.21162 0.99094 0.92698 0.98777 0.88738 1.21908 0.92678 1.02594 1.03424 1.20411 1.01658 0.89591 0.97990 1.19851 0.94570 0.95889 1.00092 1.20878 0.96404 0.94104 0.97680 1.21181 1.00019 0.94485 1.06832 1.19001 0.94723 0.82293 0.97000 1.86042 1.37953 1.20638 1.78862 1.23009 0.84578 1.00534 0.98551 1.20373 0.96189 0.95484 1.04718 1.20900 0.99216 0.91960 0.97402 0.92717 0.92508 0.92865 0.90398 0.91451 0.94971 0.93918 0.92578 0.88660 0.93528 0.92463 0.91217 0.90411 0.85725 0.85788 0.92839 0.92649 0.88527 0.85459 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.20 37.15 0.38 -2.23 16 2 C 0.12 2.16 6.14 -4.05 -0.02 2.13 16 3 N -0.60 -12.54 2.47 -175.07 -0.43 -12.97 16 4 C 0.23 5.48 4.84 -5.19 -0.03 5.45 16 5 C -0.53 -13.53 7.27 -34.44 -0.25 -13.78 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.14 13.29 55.43 0.74 -23.40 16 9 Si 0.89 20.31 29.54 -169.99 -5.02 15.28 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.52 10.80 6.73 -10.98 -0.07 10.73 16 14 O -0.58 -12.95 15.83 5.55 0.09 -12.86 16 15 C -0.10 -1.75 1.93 -91.77 -0.18 -1.93 16 16 H 0.09 1.79 6.26 -51.93 -0.33 1.46 16 17 C -0.15 -2.72 8.47 37.16 0.31 -2.40 16 18 C -0.06 -0.92 4.27 -27.89 -0.12 -1.04 16 19 C -0.10 -1.49 4.72 -104.60 -0.49 -1.98 16 20 C -0.07 -0.98 8.17 -39.61 -0.32 -1.30 16 21 C -0.21 -2.61 9.04 -39.43 -0.36 -2.97 16 22 C 0.11 1.53 6.69 -39.22 -0.26 1.27 16 23 O -0.32 -3.99 10.50 -19.42 -0.20 -4.19 16 24 C 0.03 0.24 9.81 101.05 0.99 1.23 16 25 C -0.15 -1.99 9.99 -39.43 -0.39 -2.38 16 26 C -0.08 -1.05 9.69 -39.60 -0.38 -1.43 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 31 H 0.07 1.28 7.51 -51.93 -0.39 0.89 16 32 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.04 1.03 5.69 -51.93 -0.30 0.73 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.09 2.03 5.57 -51.93 -0.29 1.74 16 36 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 37 H 0.06 0.98 6.77 -51.93 -0.35 0.62 16 38 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 39 H 0.08 1.24 7.97 -51.93 -0.41 0.82 16 40 H 0.12 1.53 8.05 -52.49 -0.42 1.11 16 41 H 0.12 1.28 6.30 -52.48 -0.33 0.95 16 42 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 43 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 46 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -29.29 372.96 -7.88 -37.18 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.38 Total: 4.34 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -1.30 Total: -9.00 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.30 Total: -36.38 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.12 Total: -17.05 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.29 -7.88 -37.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158599017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.699 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds