Wall clock time and date at job start Tue Mar 31 2020 10:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.52996 * 109.47210 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47094 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99990 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99575 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99588 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47111 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47213 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47110 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00016 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99838 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00447 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99806 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47474 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47278 * 119.99816 * 20 18 16 23 23 H 1.48510 * 109.47116 * 239.99648 * 20 18 16 24 24 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 25 25 C 1.38143 * 120.05579 * 359.44512 * 24 6 5 26 26 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 27 27 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 29 29 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 32 32 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 33 33 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 34 34 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 35 35 H 1.08997 * 109.47037 * 300.00424 * 9 8 7 36 36 H 1.09000 * 109.46839 * 60.00324 * 9 8 7 37 37 H 0.96992 * 120.00688 * 0.02562 * 12 10 9 38 38 H 1.09008 * 109.47050 * 300.00154 * 13 12 10 39 39 H 1.09003 * 109.46830 * 59.99827 * 13 12 10 40 40 H 1.09005 * 109.46552 * 299.99865 * 14 13 12 41 41 H 1.08991 * 109.47305 * 59.99754 * 14 13 12 42 42 H 1.09000 * 109.47214 * 300.00214 * 15 14 13 43 43 H 1.09000 * 109.46955 * 59.99998 * 15 14 13 44 44 H 0.96995 * 120.00556 * 180.02562 * 19 18 16 45 45 H 1.08001 * 119.97259 * 179.69844 * 24 6 5 46 46 H 1.07992 * 120.02912 * 180.24892 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9107 6.8382 -1.4382 10 6 5.1387 7.2871 -2.8586 11 8 4.7808 6.5857 -3.7811 12 7 5.7402 8.4680 -3.1038 13 6 5.9613 8.9046 -4.4847 14 6 6.6566 10.2675 -4.4836 15 6 6.8880 10.7232 -5.9257 16 6 7.5723 12.0658 -5.9245 17 1 7.8179 12.5459 -4.9888 18 6 7.8847 12.6813 -7.1180 19 7 7.5861 12.0966 -8.2575 20 14 8.7336 14.3453 -7.1166 21 1 8.9589 14.7849 -5.7161 22 1 10.0381 14.2362 -7.8176 23 1 7.8779 15.3382 -7.8149 24 6 1.9209 3.6048 0.0081 25 6 1.2914 2.3752 0.0014 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 4.0208 0.3801 -0.0005 30 1 5.1344 2.5752 -0.0008 31 1 3.3580 5.7459 0.5176 32 1 4.9441 4.9378 0.5160 33 1 4.8445 4.7475 -1.9543 34 1 3.2585 5.5555 -1.9527 35 1 4.2826 7.5651 -0.9233 36 1 5.8689 6.7577 -0.9248 37 1 6.0268 9.0288 -2.3662 38 1 6.5890 8.1773 -4.9997 39 1 5.0031 8.9855 -4.9980 40 1 6.0291 10.9949 -3.9685 41 1 7.6147 10.1861 -3.9704 42 1 7.5155 9.9956 -6.4404 43 1 5.9300 10.8045 -6.4392 44 1 7.8062 12.5294 -9.0971 45 1 1.3340 4.5114 0.0143 46 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171500625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:44 Heat of formation + Delta-G solvation = -107.841668 kcal Electronic energy + Delta-G solvation = -22867.993129 eV Core-core repulsion = 19334.623184 eV Total energy + Delta-G solvation = -3533.369945 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09081 -40.68368 -38.75116 -37.01290 -35.44153 -35.16650 -33.08605 -32.04979 -31.58273 -29.07260 -28.34126 -27.01243 -24.97665 -23.62684 -23.20420 -22.30115 -21.63399 -21.00301 -19.09245 -18.55795 -17.88723 -17.31331 -16.89688 -16.85898 -16.64268 -16.43013 -16.14611 -15.99996 -15.27441 -14.99749 -14.68675 -14.52062 -14.28253 -14.25042 -14.02068 -13.74308 -13.51207 -13.21770 -12.87232 -12.78331 -12.65269 -12.56860 -12.54654 -12.34124 -11.97324 -11.77827 -11.76183 -11.67677 -11.58700 -11.46583 -11.22402 -10.76228 -10.56562 -10.05286 -9.93553 -9.01098 -8.19743 -6.31516 0.40965 0.46249 1.42098 1.42150 1.55546 1.71961 2.29132 2.39635 2.43560 2.80925 3.14142 3.83464 3.85943 3.88458 3.97895 4.14684 4.19289 4.21523 4.29920 4.35670 4.36594 4.48473 4.50616 4.55401 4.64101 4.69794 4.77288 4.80426 4.81759 4.94360 4.99123 5.04000 5.09452 5.17105 5.26037 5.36015 5.42526 5.44287 5.49624 5.55886 5.70129 5.75796 5.83850 5.87630 6.21848 6.45730 6.65943 6.86515 7.35145 7.38518 8.92599 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.045344 B = 0.001556 C = 0.001536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.355868 B =17992.035115 C =18220.352129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.101 3.899 4 C -0.168 4.168 5 C -0.084 4.084 6 C -0.126 4.126 7 C -0.067 4.067 8 C -0.094 4.094 9 C -0.128 4.128 10 C 0.499 3.501 11 O -0.598 6.598 12 N -0.718 5.718 13 C 0.128 3.872 14 C -0.101 4.101 15 C 0.021 3.979 16 C -0.540 4.540 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.086 4.086 25 C -0.213 4.213 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.065 0.935 29 H 0.134 0.866 30 H 0.144 0.856 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.417 0.583 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.069 0.931 41 H 0.069 0.931 42 H -0.009 1.009 43 H -0.009 1.009 44 H 0.263 0.737 45 H 0.140 0.860 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.077 -19.442 25.005 33.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.057 3.943 4 C -0.186 4.186 5 C -0.102 4.102 6 C -0.126 4.126 7 C -0.104 4.104 8 C -0.132 4.132 9 C -0.168 4.168 10 C 0.287 3.713 11 O -0.479 6.479 12 N -0.370 5.370 13 C 0.004 3.996 14 C -0.139 4.139 15 C -0.016 4.016 16 C -0.578 4.578 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.104 4.104 25 C -0.232 4.232 26 H 0.078 0.922 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.254 0.746 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.072 0.928 45 H 0.158 0.842 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.242 -20.102 24.185 33.747 hybrid contribution 0.191 0.907 -0.729 1.179 sum -12.051 -19.195 23.455 32.616 Atomic orbital electron populations 1.23300 0.76671 1.05429 1.02088 1.86032 1.23318 1.27161 1.88908 1.19294 0.92858 0.84682 0.97507 1.20664 0.91717 0.99365 1.06875 1.21143 1.00829 0.90889 0.97346 1.20068 0.93830 0.96052 1.02670 1.20546 1.01576 0.92606 0.95710 1.21247 1.00205 0.95078 0.96712 1.21743 1.05117 0.99089 0.90812 1.21696 0.76017 0.80264 0.93273 1.90690 1.52848 1.55643 1.48727 1.46055 1.60771 1.21336 1.08821 1.21185 0.99157 0.96028 0.83263 1.21587 1.00022 0.93886 0.98377 1.18969 0.95037 0.95216 0.92425 1.21719 1.38509 1.04690 0.92927 0.91407 1.26039 0.96684 1.02192 0.95237 1.70119 1.48859 1.40560 0.98075 0.85349 0.77880 0.78702 0.78792 1.18063 1.20619 1.20617 1.21152 0.94419 0.97641 0.97176 1.21465 1.00935 0.92213 1.08569 0.92172 0.86461 0.91643 0.84853 0.83818 0.89141 0.89119 0.93188 0.93210 0.85848 0.85861 0.74563 0.93709 0.93686 0.91253 0.91268 0.99095 0.99091 0.92840 0.84180 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.19 10.50 -92.47 -0.97 -7.17 16 3 C 0.10 1.94 6.69 22.51 0.15 2.09 16 4 C -0.17 -3.10 9.99 22.37 0.22 -2.88 16 5 C -0.08 -1.39 9.69 22.25 0.22 -1.18 16 6 C -0.13 -2.01 5.14 -19.85 -0.10 -2.11 16 7 C -0.07 -0.79 5.34 29.85 0.16 -0.63 16 8 C -0.09 -1.66 4.49 30.59 0.14 -1.52 16 9 C -0.13 -1.93 5.70 29.85 0.17 -1.76 16 10 C 0.50 13.51 7.83 87.66 0.69 14.19 16 11 O -0.60 -22.69 15.98 -3.03 -0.05 -22.74 16 12 N -0.72 -18.82 5.56 -463.03 -2.57 -21.40 16 13 C 0.13 4.56 5.67 86.38 0.49 5.05 16 14 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 15 C 0.02 1.11 4.97 29.85 0.15 1.26 16 16 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 18 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 19 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 20 Si 0.97 43.69 29.54 68.60 2.03 45.72 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 C -0.09 -1.36 9.69 22.25 0.22 -1.15 16 25 C -0.21 -3.51 9.04 22.37 0.20 -3.31 16 26 H 0.06 0.53 7.66 -2.39 -0.02 0.51 16 27 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.49 7.66 -2.39 -0.02 0.47 16 29 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 31 H 0.09 0.77 8.08 -2.39 -0.02 0.75 16 32 H 0.09 0.78 8.08 -2.39 -0.02 0.76 16 33 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.05 1.08 8.10 -2.38 -0.02 1.06 16 35 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.42 7.73 8.47 -92.71 -0.79 6.94 16 38 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 41 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 42 H -0.01 -0.54 8.14 -2.39 -0.02 -0.55 16 43 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 44 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.14 1.71 6.30 -2.91 -0.02 1.69 16 Total: -1.00 -76.90 386.03 3.55 -73.35 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.16 Total: 13.36 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: 4.67 Total: -24.04 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -2.29 Total: -78.49 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.02 Total: -29.91 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -76.90 3.55 -73.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171500625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.489 kcal (2) G-P(sol) polarization free energy of solvation -76.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds