Wall clock time and date at job start Tue Mar 31 2020 10:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.46915 * 2 1 4 4 C 1.34235 * 116.99672 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99882 * 180.02562 * 4 3 2 7 7 H 1.09006 * 109.47046 * 309.10621 * 6 4 3 8 8 C 1.52997 * 109.47353 * 69.10680 * 6 4 3 9 9 C 1.50703 * 109.46955 * 185.00292 * 8 6 4 10 10 C 1.38234 * 119.99779 * 269.72306 * 9 8 6 11 11 C 1.38235 * 120.00015 * 179.76623 * 10 9 8 12 12 C 1.38233 * 119.99728 * 0.51254 * 11 10 9 13 13 C 1.38232 * 120.00109 * 359.74225 * 12 11 10 14 14 C 1.38233 * 120.00104 * 90.00185 * 9 8 6 15 15 N 1.46898 * 109.47068 * 189.10711 * 6 4 3 16 16 C 1.46895 * 111.00029 * 298.24996 * 15 6 4 17 17 C 1.46910 * 111.00081 * 62.20577 * 15 6 4 18 18 C 1.53000 * 109.47041 * 169.99742 * 17 15 6 19 19 C 1.50695 * 109.46928 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00202 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00370 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00611 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99635 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47113 * 90.00286 * 23 21 19 25 25 H 1.48503 * 109.47157 * 210.00025 * 23 21 19 26 26 H 1.48505 * 109.47182 * 330.00191 * 23 21 19 27 27 H 1.08999 * 109.47463 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47242 * 300.00395 * 1 2 3 29 29 H 1.09003 * 109.47415 * 59.99994 * 1 2 3 30 30 H 1.09001 * 109.47242 * 239.99605 * 2 1 3 31 31 H 1.09003 * 109.46902 * 119.99435 * 2 1 3 32 32 H 1.09000 * 109.47222 * 64.99786 * 8 6 4 33 33 H 1.08999 * 109.47025 * 304.99754 * 8 6 4 34 34 H 1.08000 * 120.00040 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.99960 * 180.23023 * 11 10 9 36 36 H 1.08001 * 119.99830 * 179.72059 * 12 11 10 37 37 H 1.08003 * 119.99776 * 179.97438 * 13 12 11 38 38 H 1.07993 * 120.00113 * 359.97438 * 14 9 8 39 39 H 1.09000 * 109.46951 * 68.34446 * 16 15 6 40 40 H 1.09003 * 109.47024 * 188.33939 * 16 15 6 41 41 H 1.08997 * 109.47544 * 308.34256 * 16 15 6 42 42 H 1.09003 * 109.46597 * 290.00163 * 17 15 6 43 43 H 1.08997 * 109.46739 * 50.00035 * 17 15 6 44 44 H 1.08996 * 109.47483 * 300.00323 * 18 17 15 45 45 H 1.09005 * 109.46538 * 60.00436 * 18 17 15 46 46 H 0.96996 * 120.00210 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.4608 3.5212 -0.7963 8 6 3.6398 3.6049 1.3489 9 6 4.1063 5.0373 1.3068 10 6 5.3971 5.3552 1.6861 11 6 5.8266 6.6684 1.6430 12 6 4.9621 7.6651 1.2307 13 6 3.6697 7.3479 0.8564 14 6 3.2418 6.0340 0.8945 15 7 5.3716 2.8672 -0.2176 16 6 6.0313 2.1215 0.8625 17 6 5.6787 2.2782 -1.5279 18 6 7.1696 2.4478 -1.8265 19 6 7.4847 1.8431 -3.1704 20 1 6.6999 1.3841 -3.7534 21 6 8.7748 1.8757 -3.6557 22 7 9.0497 1.3484 -4.8287 23 14 10.1323 2.6689 -2.6471 24 1 10.7544 1.6488 -1.7653 25 1 11.1622 3.2302 -3.5578 26 1 9.5595 3.7584 -1.8162 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.1727 3.0721 2.1364 33 1 2.5692 3.5774 1.5518 34 1 6.0710 4.5771 2.0129 35 1 6.8362 6.9162 1.9358 36 1 5.2962 8.6917 1.2013 37 1 2.9942 8.1268 0.5347 38 1 2.2322 5.7862 0.6021 39 1 5.7454 1.0712 0.8060 40 1 7.1127 2.2098 0.7571 41 1 5.7256 2.5301 1.8256 42 1 5.4286 1.2173 -1.5169 43 1 5.0943 2.7813 -2.2983 44 1 7.4197 3.5086 -1.8374 45 1 7.7539 1.9446 -1.0561 46 1 9.9572 1.3717 -5.1703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171920108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:38 Heat of formation + Delta-G solvation = -55.554127 kcal Electronic energy + Delta-G solvation = -25670.734059 eV Core-core repulsion = 22139.631472 eV Total energy + Delta-G solvation = -3531.102587 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.87490 -39.20859 -37.72157 -35.95036 -33.81684 -32.46549 -31.82359 -30.79950 -30.23852 -28.69517 -26.59106 -24.83217 -23.70288 -22.46897 -22.43258 -21.22189 -20.19798 -19.84502 -17.73543 -16.99793 -16.87964 -16.39733 -16.27342 -15.59859 -15.10061 -14.60135 -14.51631 -14.22862 -14.04985 -13.84856 -13.45704 -13.24739 -12.94144 -12.74276 -12.72914 -12.48198 -12.30724 -12.14646 -11.81540 -11.73994 -11.52557 -11.35430 -11.16009 -11.01820 -10.92707 -10.69337 -10.53313 -10.48870 -9.90533 -9.80521 -9.70617 -9.16950 -8.79321 -8.59159 -8.48237 -7.86747 -5.99879 -3.97448 1.42579 1.53556 2.27146 2.70360 3.35167 3.42109 3.48276 3.88558 4.14160 4.50282 4.62353 4.78422 4.83862 4.88037 4.91867 5.03614 5.09262 5.13169 5.14628 5.24969 5.34888 5.43080 5.52905 5.55183 5.61092 5.63308 5.74266 5.77476 5.82154 6.02194 6.10124 6.15295 6.18560 6.33346 6.42627 6.54492 6.61880 6.66022 6.73202 6.84001 7.06946 7.11902 7.24370 7.48301 7.61490 7.86939 7.87818 8.58091 9.04420 9.62679 11.13688 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008764 B = 0.005428 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.127785 B = 5156.769349 C = 7696.464695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.364 6.364 4 C 0.431 3.569 5 O -0.493 6.493 6 C 0.099 3.901 7 H 0.117 0.883 8 C -0.071 4.071 9 C -0.066 4.066 10 C -0.089 4.089 11 C -0.120 4.120 12 C -0.125 4.125 13 C -0.124 4.124 14 C -0.117 4.117 15 N -0.502 5.502 16 C -0.004 4.004 17 C 0.057 3.943 18 C -0.002 4.002 19 C -0.518 4.518 20 H 0.069 0.931 21 C 0.068 3.932 22 N -0.905 5.905 23 Si 0.879 3.121 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.263 1.263 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.063 0.937 44 H 0.023 0.977 45 H 0.012 0.988 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.152 6.743 15.922 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.280 6.280 4 C 0.272 3.728 5 O -0.380 6.380 6 C -0.012 4.012 7 H 0.135 0.865 8 C -0.109 4.109 9 C -0.066 4.066 10 C -0.107 4.107 11 C -0.139 4.139 12 C -0.143 4.143 13 C -0.142 4.142 14 C -0.135 4.135 15 N -0.225 5.225 16 C -0.152 4.152 17 C -0.069 4.069 18 C -0.040 4.040 19 C -0.557 4.557 20 H 0.088 0.912 21 C -0.133 4.133 22 N -0.544 5.544 23 Si 0.707 3.293 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.187 1.187 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.042 0.958 45 H 0.030 0.970 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.614 6.866 15.793 23.245 hybrid contribution 0.606 -0.708 0.165 0.947 sum -15.008 6.158 15.957 22.755 Atomic orbital electron populations 1.21789 0.92844 1.02772 1.03367 1.22974 0.95185 0.80916 1.02514 1.86563 1.25477 1.32013 1.83946 1.25836 0.80450 0.94325 0.72238 1.90632 1.59482 1.43415 1.44479 1.21856 0.90695 0.88266 1.00428 0.86494 1.20656 1.02002 0.92865 0.95357 1.19470 0.94246 0.93834 0.99079 1.21045 0.95050 0.96184 0.98372 1.21130 0.99425 0.93158 1.00138 1.21094 0.94116 0.99116 0.99954 1.21036 0.96203 0.96297 1.00680 1.20997 0.99495 0.92762 1.00287 1.62714 1.02778 1.52264 1.04773 1.22844 1.00483 0.98572 0.93256 1.22381 1.00268 0.97649 0.86634 1.19509 0.90480 0.97233 0.96778 1.21067 0.95409 1.37421 1.01779 0.91248 1.24976 0.98586 0.94933 0.94814 1.69914 1.20285 1.45825 1.18403 0.86778 0.81802 0.80405 0.80360 1.20398 1.21466 1.18704 0.90477 0.91647 0.91475 0.91264 0.91538 0.90031 0.89656 0.85992 0.86378 0.86598 0.86490 0.86299 0.92009 0.90764 0.92388 0.93335 0.91867 0.95830 0.96975 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 37.16 0.38 -0.80 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.36 -4.77 10.22 -39.27 -0.40 -5.17 16 4 C 0.43 6.52 6.59 36.01 0.24 6.76 16 5 O -0.49 -8.94 11.50 -18.75 -0.22 -9.15 16 6 C 0.10 1.40 2.28 -68.87 -0.16 1.25 16 7 H 0.12 1.61 8.09 -51.93 -0.42 1.19 16 8 C -0.07 -0.81 4.57 -27.88 -0.13 -0.93 16 9 C -0.07 -0.79 4.95 -104.62 -0.52 -1.31 16 10 C -0.09 -1.12 9.31 -39.58 -0.37 -1.49 16 11 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 12 C -0.12 -1.39 10.05 -39.59 -0.40 -1.78 16 13 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 14 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 15 N -0.50 -8.62 4.17 -236.28 -0.98 -9.61 16 16 C 0.00 -0.07 8.10 60.06 0.49 0.42 16 17 C 0.06 1.21 4.40 -3.82 -0.02 1.19 16 18 C 0.00 -0.06 3.96 -27.89 -0.11 -0.17 16 19 C -0.52 -15.27 9.66 -34.44 -0.33 -15.61 16 20 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 22 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 23 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 31 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.08 0.90 5.88 -51.93 -0.31 0.60 16 33 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.12 1.52 6.55 -52.49 -0.34 1.17 16 35 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.06 1.11 5.42 -51.93 -0.28 0.82 16 40 H 0.07 1.28 6.68 -51.93 -0.35 0.94 16 41 H 0.06 0.77 4.72 -51.93 -0.25 0.52 16 42 H 0.05 1.11 6.11 -51.93 -0.32 0.79 16 43 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 44 H 0.02 0.60 7.20 -51.93 -0.37 0.22 16 45 H 0.01 0.30 6.07 -51.93 -0.32 -0.02 16 46 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -33.46 365.76 -9.13 -42.59 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.18 Total: 0.87 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.97 Total: -14.92 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.21 Total: -37.42 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.62 Total: -14.32 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.46 -9.13 -42.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171920108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.959 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds