Wall clock time and date at job start Tue Mar 31 2020 10:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.46915 * 2 1 4 4 C 1.34235 * 116.99672 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00142 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99882 * 180.02562 * 4 3 2 7 7 H 1.09006 * 109.47046 * 309.10621 * 6 4 3 8 8 C 1.52997 * 109.47353 * 69.10680 * 6 4 3 9 9 C 1.50703 * 109.46955 * 185.00292 * 8 6 4 10 10 C 1.38234 * 119.99779 * 269.72306 * 9 8 6 11 11 C 1.38235 * 120.00015 * 179.76623 * 10 9 8 12 12 C 1.38233 * 119.99728 * 0.51254 * 11 10 9 13 13 C 1.38232 * 120.00109 * 359.74225 * 12 11 10 14 14 C 1.38233 * 120.00104 * 90.00185 * 9 8 6 15 15 N 1.46898 * 109.47068 * 189.10711 * 6 4 3 16 16 C 1.46895 * 111.00029 * 298.24996 * 15 6 4 17 17 C 1.46910 * 111.00081 * 62.20577 * 15 6 4 18 18 C 1.53000 * 109.47041 * 169.99742 * 17 15 6 19 19 C 1.50695 * 109.46928 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00202 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00370 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00611 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99635 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47113 * 90.00286 * 23 21 19 25 25 H 1.48503 * 109.47157 * 210.00025 * 23 21 19 26 26 H 1.48505 * 109.47182 * 330.00191 * 23 21 19 27 27 H 1.08999 * 109.47463 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47242 * 300.00395 * 1 2 3 29 29 H 1.09003 * 109.47415 * 59.99994 * 1 2 3 30 30 H 1.09001 * 109.47242 * 239.99605 * 2 1 3 31 31 H 1.09003 * 109.46902 * 119.99435 * 2 1 3 32 32 H 1.09000 * 109.47222 * 64.99786 * 8 6 4 33 33 H 1.08999 * 109.47025 * 304.99754 * 8 6 4 34 34 H 1.08000 * 120.00040 * 359.97438 * 10 9 8 35 35 H 1.08001 * 119.99960 * 180.23023 * 11 10 9 36 36 H 1.08001 * 119.99830 * 179.72059 * 12 11 10 37 37 H 1.08003 * 119.99776 * 179.97438 * 13 12 11 38 38 H 1.07993 * 120.00113 * 359.97438 * 14 9 8 39 39 H 1.09000 * 109.46951 * 68.34446 * 16 15 6 40 40 H 1.09003 * 109.47024 * 188.33939 * 16 15 6 41 41 H 1.08997 * 109.47544 * 308.34256 * 16 15 6 42 42 H 1.09003 * 109.46597 * 290.00163 * 17 15 6 43 43 H 1.08997 * 109.46739 * 50.00035 * 17 15 6 44 44 H 1.08996 * 109.47483 * 300.00323 * 18 17 15 45 45 H 1.09005 * 109.46538 * 60.00436 * 18 17 15 46 46 H 0.96996 * 120.00210 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0012 7 1 3.4608 3.5212 -0.7963 8 6 3.6398 3.6049 1.3489 9 6 4.1063 5.0373 1.3068 10 6 5.3971 5.3552 1.6861 11 6 5.8266 6.6684 1.6430 12 6 4.9621 7.6651 1.2307 13 6 3.6697 7.3479 0.8564 14 6 3.2418 6.0340 0.8945 15 7 5.3716 2.8672 -0.2176 16 6 6.0313 2.1215 0.8625 17 6 5.6787 2.2782 -1.5279 18 6 7.1696 2.4478 -1.8265 19 6 7.4847 1.8431 -3.1704 20 1 6.6999 1.3841 -3.7534 21 6 8.7748 1.8757 -3.6557 22 7 9.0497 1.3484 -4.8287 23 14 10.1323 2.6689 -2.6471 24 1 10.7544 1.6488 -1.7653 25 1 11.1622 3.2302 -3.5578 26 1 9.5595 3.7584 -1.8162 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 4.1727 3.0721 2.1364 33 1 2.5692 3.5774 1.5518 34 1 6.0710 4.5771 2.0129 35 1 6.8362 6.9162 1.9358 36 1 5.2962 8.6917 1.2013 37 1 2.9942 8.1268 0.5347 38 1 2.2322 5.7862 0.6021 39 1 5.7454 1.0712 0.8060 40 1 7.1127 2.2098 0.7571 41 1 5.7256 2.5301 1.8256 42 1 5.4286 1.2173 -1.5169 43 1 5.0943 2.7813 -2.2983 44 1 7.4197 3.5086 -1.8374 45 1 7.7539 1.9446 -1.0561 46 1 9.9572 1.3717 -5.1703 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171920108.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:37 Heat of formation + Delta-G solvation = -75.066385 kcal Electronic energy + Delta-G solvation = -25671.580174 eV Core-core repulsion = 22139.631472 eV Total energy + Delta-G solvation = -3531.948702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07227 -40.10777 -38.90812 -37.22114 -35.50225 -34.16430 -32.64160 -31.93841 -31.59766 -29.92526 -28.05084 -26.12594 -25.10283 -23.54132 -23.29710 -22.24416 -21.85139 -21.10827 -19.07761 -18.88926 -17.96112 -17.52812 -17.29612 -16.84429 -16.31088 -15.93779 -15.87971 -15.50099 -15.34079 -15.20112 -14.65650 -14.53816 -14.18968 -13.92701 -13.75842 -13.60942 -13.39550 -13.36108 -13.07803 -12.94861 -12.81632 -12.66953 -12.51625 -12.25887 -12.06942 -11.86149 -11.76148 -11.68113 -11.64005 -11.50713 -11.45088 -11.42320 -10.77305 -9.64000 -9.46259 -9.29152 -8.31703 -6.36025 0.56000 0.68984 1.08913 1.34162 1.36372 1.49862 1.64871 2.35066 2.80096 3.01845 3.03898 3.61967 3.87981 3.93786 3.97790 4.06512 4.09216 4.14267 4.26701 4.31000 4.32176 4.43110 4.48866 4.55398 4.65604 4.71242 4.75195 4.84048 4.88937 4.91324 4.92467 4.95632 5.05587 5.17892 5.21669 5.30527 5.33269 5.41045 5.52402 5.59790 5.72383 5.78708 5.85342 5.95189 5.98156 6.26195 6.29014 6.69079 6.70921 7.28386 8.85365 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008764 B = 0.005428 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.127785 B = 5156.769349 C = 7696.464695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.358 6.358 4 C 0.434 3.566 5 O -0.528 6.528 6 C 0.100 3.900 7 H 0.124 0.876 8 C -0.060 4.060 9 C -0.078 4.078 10 C -0.107 4.107 11 C -0.137 4.137 12 C -0.132 4.132 13 C -0.130 4.130 14 C -0.122 4.122 15 N -0.500 5.500 16 C 0.000 4.000 17 C 0.072 3.928 18 C 0.008 3.992 19 C -0.533 4.533 20 H 0.027 0.973 21 C 0.008 3.992 22 N -0.951 5.951 23 Si 0.952 3.048 24 H -0.267 1.267 25 H -0.281 1.281 26 H -0.246 1.246 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.024 0.976 45 H 0.016 0.984 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.168 8.499 18.014 26.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.273 6.273 4 C 0.276 3.724 5 O -0.418 6.418 6 C -0.012 4.012 7 H 0.141 0.859 8 C -0.097 4.097 9 C -0.078 4.078 10 C -0.125 4.125 11 C -0.155 4.155 12 C -0.150 4.150 13 C -0.148 4.148 14 C -0.140 4.140 15 N -0.223 5.223 16 C -0.148 4.148 17 C -0.055 4.055 18 C -0.030 4.030 19 C -0.572 4.572 20 H 0.045 0.955 21 C -0.189 4.189 22 N -0.592 5.592 23 Si 0.775 3.225 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.169 1.169 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.034 0.966 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.672 8.631 17.901 25.940 hybrid contribution 0.790 -1.293 -0.538 1.608 sum -15.882 7.338 17.364 24.649 Atomic orbital electron populations 1.21800 0.89923 1.04290 1.03930 1.23249 0.97429 0.79732 1.01943 1.86548 1.24144 1.33312 1.83327 1.25900 0.80946 0.94219 0.71330 1.90635 1.60390 1.44521 1.46219 1.21965 0.88588 0.88038 1.02579 0.85871 1.20626 1.03569 0.92285 0.93258 1.19558 0.94302 0.94208 0.99690 1.21170 0.95526 0.96541 0.99236 1.21354 1.00217 0.93301 1.00583 1.21400 0.94307 0.99910 0.99417 1.21380 0.96468 0.96901 1.00066 1.21294 1.00327 0.92746 0.99640 1.62593 1.05221 1.51512 1.02940 1.22824 0.99718 0.97793 0.94417 1.21986 0.97860 0.96561 0.89095 1.19344 0.93025 0.96476 0.94176 1.21380 0.94751 1.37516 1.03535 0.95484 1.25967 1.01472 0.95445 0.96005 1.70063 1.21282 1.47368 1.20438 0.85636 0.78132 0.79917 0.78854 1.19238 1.20635 1.16915 0.88495 0.90516 0.91414 0.92773 0.91325 0.89731 0.87249 0.86349 0.85569 0.84827 0.84302 0.84307 0.93684 0.91930 0.89125 0.95564 0.92386 0.95765 0.96606 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.29 71.98 0.74 -1.18 16 2 C 0.05 1.07 6.19 71.98 0.45 1.52 16 3 O -0.36 -8.93 10.22 -51.46 -0.53 -9.46 16 4 C 0.43 12.88 6.59 71.24 0.47 13.35 16 5 O -0.53 -19.42 11.50 21.97 0.25 -19.17 16 6 C 0.10 2.68 2.28 44.17 0.10 2.79 16 7 H 0.12 3.20 8.09 -2.38 -0.02 3.18 16 8 C -0.06 -1.22 4.57 29.85 0.14 -1.08 16 9 C -0.08 -1.68 4.95 -19.87 -0.10 -1.78 16 10 C -0.11 -2.52 9.31 22.27 0.21 -2.31 16 11 C -0.14 -3.05 10.05 22.27 0.22 -2.82 16 12 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 13 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 14 C -0.12 -2.36 9.70 22.27 0.22 -2.14 16 15 N -0.50 -16.85 4.17 -901.46 -3.75 -20.61 16 16 C 0.00 -0.01 8.10 127.69 1.03 1.03 16 17 C 0.07 3.13 4.40 86.30 0.38 3.51 16 18 C 0.01 0.38 3.96 29.85 0.12 0.50 16 19 C -0.53 -32.45 9.66 25.60 0.25 -32.21 16 20 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 21 C 0.01 0.48 5.47 84.65 0.46 0.95 16 22 N -0.95 -61.55 13.96 21.45 0.30 -61.25 16 23 Si 0.95 46.03 27.47 68.60 1.88 47.92 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 27 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 31 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.08 1.66 5.88 -2.39 -0.01 1.65 16 33 H 0.11 1.71 8.09 -2.39 -0.02 1.70 16 34 H 0.12 2.77 6.55 -2.91 -0.02 2.75 16 35 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 37 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.04 1.62 5.42 -2.39 -0.01 1.60 16 40 H 0.06 2.12 6.68 -2.39 -0.02 2.10 16 41 H 0.09 2.26 4.72 -2.39 -0.01 2.25 16 42 H 0.03 1.25 6.11 -2.39 -0.01 1.24 16 43 H 0.06 2.52 8.04 -2.39 -0.02 2.50 16 44 H 0.02 1.21 7.20 -2.39 -0.02 1.19 16 45 H 0.02 0.78 6.07 -2.38 -0.01 0.76 16 46 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -74.16 365.76 4.19 -69.97 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.90 Total: 17.14 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: 5.13 Total: -24.54 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -3.46 Total: -81.86 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.27 Total: -28.63 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.88 Total: 47.92 kcal Total: -74.16 4.19 -69.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171920108.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.096 kcal (2) G-P(sol) polarization free energy of solvation -74.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds