Wall clock time and date at job start Tue Mar 31 2020 10:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35984 * 116.99865 * 2 1 4 4 C 1.38720 * 120.05008 * 359.97438 * 3 2 1 5 5 C 1.38119 * 120.21785 * 180.51167 * 4 3 2 6 6 C 1.38945 * 119.79263 * 359.97438 * 5 4 3 7 7 C 1.37958 * 119.77672 * 359.16684 * 6 5 4 8 8 C 1.37959 * 120.72056 * 1.23279 * 7 6 5 9 9 C 1.51746 * 119.22784 * 181.50872 * 7 6 5 10 10 H 1.08996 * 109.72333 * 171.97952 * 9 7 6 11 11 N 1.46898 * 109.59351 * 51.59415 * 9 7 6 12 12 C 1.46903 * 110.99849 * 85.76580 * 11 9 7 13 13 C 1.53000 * 109.47252 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47355 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 179.72538 * 17 15 14 20 20 H 1.48498 * 109.47200 * 59.99994 * 19 17 15 21 21 H 1.48498 * 109.46671 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47156 * 300.00008 * 19 17 15 23 23 C 1.52838 * 108.72234 * 291.82836 * 9 7 6 24 24 C 1.52117 * 110.87068 * 83.58131 * 23 9 7 25 25 C 1.51449 * 113.44594 * 292.24376 * 24 23 9 26 26 O 1.36136 * 119.67726 * 178.84931 * 6 5 4 27 27 H 1.09003 * 109.47003 * 59.99955 * 1 2 3 28 28 H 1.08997 * 109.46761 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46939 * 299.99832 * 1 2 3 30 30 H 1.07997 * 119.88805 * 0.49313 * 4 3 2 31 31 H 1.07998 * 120.10345 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.21096 * 179.25349 * 8 7 6 33 33 H 1.00897 * 111.00408 * 209.71564 * 11 9 7 34 34 H 1.09000 * 109.47311 * 60.00100 * 12 11 9 35 35 H 1.09002 * 109.47056 * 299.99758 * 12 11 9 36 36 H 1.09000 * 109.46966 * 59.99784 * 13 12 11 37 37 H 1.09002 * 109.46807 * 299.99806 * 13 12 11 38 38 H 1.08998 * 109.46837 * 59.99832 * 14 13 12 39 39 H 1.09002 * 109.46926 * 299.99636 * 14 13 12 40 40 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.19954 * 203.93758 * 23 9 7 42 42 H 1.09004 * 109.20328 * 323.22321 * 23 9 7 43 43 H 1.09004 * 108.69085 * 53.26179 * 24 23 9 44 44 H 1.09000 * 108.69228 * 171.34809 * 24 23 9 45 45 H 1.09005 * 109.19906 * 185.56245 * 25 24 23 46 46 H 1.09004 * 109.20102 * 304.90155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2918 2.3757 -0.0005 5 6 1.9152 3.6082 -0.0112 6 6 3.3028 3.6799 -0.0209 7 6 4.0490 2.5197 -0.0023 8 6 3.4327 1.2854 0.0002 9 6 5.5634 2.6130 0.0217 10 1 5.9905 1.6224 0.1773 11 7 5.9846 3.5074 1.1082 12 6 6.0907 2.7782 2.3790 13 6 6.5300 3.7408 3.4842 14 6 6.6411 2.9812 4.8077 15 6 7.0744 3.9291 5.8961 16 1 7.2532 4.9693 5.6668 17 6 7.2427 3.4685 7.1848 18 7 7.0256 2.2018 7.4640 19 14 7.7873 4.6420 8.5324 20 1 6.7914 5.7350 8.6693 21 1 7.8926 3.9052 9.8174 22 1 9.1101 5.2187 8.1819 23 6 6.0417 3.1730 -1.3176 24 6 5.9717 4.6925 -1.3258 25 6 4.5565 5.2307 -1.2903 26 8 3.9146 4.8956 -0.0551 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2134 2.3180 0.0071 31 1 1.3260 4.5132 -0.0120 32 1 4.0250 0.3823 0.0026 33 1 6.8536 3.9673 0.8816 34 1 6.8255 1.9793 2.2793 35 1 5.1212 2.3505 2.6345 36 1 5.7949 4.5394 3.5838 37 1 7.4994 4.1689 3.2290 38 1 7.3764 2.1828 4.7078 39 1 5.6719 2.5528 5.0632 40 1 7.1436 1.8779 8.3707 41 1 7.0718 2.8607 -1.4893 42 1 5.4114 2.7809 -2.1158 43 1 6.5113 5.0717 -0.4579 44 1 6.4606 5.0599 -2.2281 45 1 4.5826 6.3151 -1.3981 46 1 3.9891 4.8020 -2.1164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178641057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:38 Heat of formation + Delta-G solvation = -55.439668 kcal Electronic energy + Delta-G solvation = -25377.830439 eV Core-core repulsion = 21846.732815 eV Total energy + Delta-G solvation = -3531.097624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.76270 -39.27277 -36.79699 -36.39879 -34.33517 -32.73310 -31.56675 -30.68270 -29.56580 -27.53120 -27.05669 -25.69858 -24.28121 -22.80283 -22.33994 -21.09590 -20.27638 -19.76420 -17.76255 -17.58651 -16.80191 -16.26643 -15.87542 -15.60693 -15.45529 -14.90039 -14.65228 -14.40901 -14.16692 -14.05136 -13.74154 -13.37020 -13.20360 -12.94381 -12.59352 -12.48184 -12.22048 -12.04045 -11.68066 -11.56131 -11.33644 -11.20343 -10.88506 -10.72596 -10.67574 -10.62926 -10.48715 -10.35067 -9.81564 -9.58911 -9.26720 -9.00731 -8.87328 -8.26955 -8.04035 -7.92913 -5.92368 -3.94099 1.25409 1.33170 3.14681 3.38591 3.42228 3.45366 3.47763 3.99721 4.41596 4.53846 4.56899 4.72655 4.81256 4.85127 4.89467 4.93928 4.97997 5.12226 5.20638 5.27411 5.28898 5.43140 5.46882 5.52146 5.59437 5.72426 5.78640 5.87329 5.91951 5.96430 5.99396 6.06316 6.21290 6.25614 6.44170 6.52010 6.56821 6.84284 6.90101 7.24105 7.24759 7.45252 7.69848 7.74956 7.77616 7.93840 8.08867 8.52380 9.13036 9.69275 11.19114 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.003480 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.113417 B = 8043.278115 C = 9268.833036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.113 3.887 4 C -0.195 4.195 5 C -0.103 4.103 6 C 0.096 3.904 7 C -0.062 4.062 8 C -0.132 4.132 9 C 0.127 3.873 10 H 0.054 0.946 11 N -0.667 5.667 12 C 0.061 3.939 13 C -0.104 4.104 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.120 4.120 24 C -0.149 4.149 25 C 0.071 3.929 26 O -0.300 6.300 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.339 0.661 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.012 0.988 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.266 -0.241 -23.254 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.068 3.932 4 C -0.214 4.214 5 C -0.121 4.121 6 C 0.051 3.949 7 C -0.063 4.063 8 C -0.151 4.151 9 C 0.016 3.984 10 H 0.072 0.928 11 N -0.300 5.300 12 C -0.068 4.068 13 C -0.142 4.142 14 C -0.015 4.015 15 C -0.556 4.556 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.158 4.158 24 C -0.187 4.187 25 C -0.004 4.004 26 O -0.216 6.216 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.776 -0.190 -22.836 25.252 hybrid contribution 0.809 -0.039 0.642 1.034 sum -9.967 -0.228 -22.194 24.331 Atomic orbital electron populations 1.23031 0.78616 1.03780 1.01280 1.86082 1.21186 1.26896 1.89025 1.18940 0.92121 0.84116 0.97992 1.21023 0.99848 0.91790 1.08767 1.21096 0.93572 0.97528 0.99939 1.18191 0.89852 0.85235 1.01575 1.20052 0.96008 0.91832 0.98455 1.20149 0.91310 0.97704 1.05967 1.20526 0.90248 0.95808 0.91788 0.92767 1.60613 1.37093 1.30643 1.01634 1.22160 1.00047 0.95647 0.88919 1.21584 0.99447 0.98078 0.95086 1.19051 0.96958 0.95334 0.90134 1.21235 1.45371 0.95572 0.93400 0.92746 1.25032 0.95685 0.95078 0.98736 1.69965 1.49791 1.13876 1.20046 0.86664 0.79208 0.81025 0.81133 1.20236 1.21351 1.20297 1.21526 1.01510 0.96199 0.96519 1.21606 0.98419 0.95579 1.03080 1.22386 0.92440 1.00073 0.85464 1.86424 1.70226 1.30820 1.34099 0.92846 0.88383 0.92589 0.85391 0.85237 0.85087 0.84054 0.95996 0.91684 0.92497 0.93839 0.96926 0.96662 0.93054 0.91226 0.91519 0.89680 0.91453 0.88986 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.85 10.50 -19.69 -0.21 -4.05 16 3 C 0.11 1.47 6.69 -39.18 -0.26 1.21 16 4 C -0.20 -2.30 9.03 -39.45 -0.36 -2.66 16 5 C -0.10 -1.30 10.00 -39.36 -0.39 -1.69 16 6 C 0.10 1.36 5.46 -39.42 -0.22 1.14 16 7 C -0.06 -0.86 4.63 -104.31 -0.48 -1.35 16 8 C -0.13 -1.80 9.64 -39.46 -0.38 -2.18 16 9 C 0.13 1.66 2.66 -68.43 -0.18 1.47 16 10 H 0.05 0.71 7.60 -51.93 -0.39 0.32 16 11 N -0.67 -10.17 4.45 -107.49 -0.48 -10.65 16 12 C 0.06 1.12 5.49 -3.82 -0.02 1.10 16 13 C -0.10 -2.28 5.41 -26.73 -0.14 -2.42 16 14 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 15 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 16 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.82 13.29 55.43 0.74 -27.09 16 19 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.12 -1.21 5.35 -27.26 -0.15 -1.35 16 24 C -0.15 -1.43 5.32 -27.96 -0.15 -1.58 16 25 C 0.07 0.74 6.50 36.37 0.24 0.98 16 26 O -0.30 -4.28 9.24 -20.17 -0.19 -4.46 16 27 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 31 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.13 1.65 7.99 -52.49 -0.42 1.23 16 33 H 0.34 4.73 6.80 -39.29 -0.27 4.47 16 34 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 35 H 0.06 1.30 8.04 -51.93 -0.42 0.89 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.01 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.64 7.89 -51.93 -0.41 0.23 16 43 H 0.08 0.92 6.05 -51.93 -0.31 0.61 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.44 7.90 -51.93 -0.41 0.03 16 LS Contribution 365.04 15.07 5.50 5.50 Total: -1.00 -33.33 365.04 -9.23 -42.56 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.52 Total: 0.56 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -2.05 Total: -19.65 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.26 Total: -37.74 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.39 Total: -8.52 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.33 -9.23 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.881 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds