Wall clock time and date at job start Tue Mar 31 2020 10:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35984 * 116.99865 * 2 1 4 4 C 1.38720 * 120.05008 * 359.97438 * 3 2 1 5 5 C 1.38119 * 120.21785 * 180.51167 * 4 3 2 6 6 C 1.38945 * 119.79263 * 359.97438 * 5 4 3 7 7 C 1.37958 * 119.77672 * 359.16684 * 6 5 4 8 8 C 1.37959 * 120.72056 * 1.23279 * 7 6 5 9 9 C 1.51746 * 119.22784 * 181.50872 * 7 6 5 10 10 H 1.08996 * 109.72333 * 171.97952 * 9 7 6 11 11 N 1.46898 * 109.59351 * 51.59415 * 9 7 6 12 12 C 1.46903 * 110.99849 * 85.76580 * 11 9 7 13 13 C 1.53000 * 109.47252 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47355 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47168 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 179.72538 * 17 15 14 20 20 H 1.48498 * 109.47200 * 59.99994 * 19 17 15 21 21 H 1.48498 * 109.46671 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47156 * 300.00008 * 19 17 15 23 23 C 1.52838 * 108.72234 * 291.82836 * 9 7 6 24 24 C 1.52117 * 110.87068 * 83.58131 * 23 9 7 25 25 C 1.51449 * 113.44594 * 292.24376 * 24 23 9 26 26 O 1.36136 * 119.67726 * 178.84931 * 6 5 4 27 27 H 1.09003 * 109.47003 * 59.99955 * 1 2 3 28 28 H 1.08997 * 109.46761 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46939 * 299.99832 * 1 2 3 30 30 H 1.07997 * 119.88805 * 0.49313 * 4 3 2 31 31 H 1.07998 * 120.10345 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.21096 * 179.25349 * 8 7 6 33 33 H 1.00897 * 111.00408 * 209.71564 * 11 9 7 34 34 H 1.09000 * 109.47311 * 60.00100 * 12 11 9 35 35 H 1.09002 * 109.47056 * 299.99758 * 12 11 9 36 36 H 1.09000 * 109.46966 * 59.99784 * 13 12 11 37 37 H 1.09002 * 109.46807 * 299.99806 * 13 12 11 38 38 H 1.08998 * 109.46837 * 59.99832 * 14 13 12 39 39 H 1.09002 * 109.46926 * 299.99636 * 14 13 12 40 40 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 41 41 H 1.09006 * 109.19954 * 203.93758 * 23 9 7 42 42 H 1.09004 * 109.20328 * 323.22321 * 23 9 7 43 43 H 1.09004 * 108.69085 * 53.26179 * 24 23 9 44 44 H 1.09000 * 108.69228 * 171.34809 * 24 23 9 45 45 H 1.09005 * 109.19906 * 185.56245 * 25 24 23 46 46 H 1.09004 * 109.20102 * 304.90155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2918 2.3757 -0.0005 5 6 1.9152 3.6082 -0.0112 6 6 3.3028 3.6799 -0.0209 7 6 4.0490 2.5197 -0.0023 8 6 3.4327 1.2854 0.0002 9 6 5.5634 2.6130 0.0217 10 1 5.9905 1.6224 0.1773 11 7 5.9846 3.5074 1.1082 12 6 6.0907 2.7782 2.3790 13 6 6.5300 3.7408 3.4842 14 6 6.6411 2.9812 4.8077 15 6 7.0744 3.9291 5.8961 16 1 7.2532 4.9693 5.6668 17 6 7.2427 3.4685 7.1848 18 7 7.0256 2.2018 7.4640 19 14 7.7873 4.6420 8.5324 20 1 6.7914 5.7350 8.6693 21 1 7.8926 3.9052 9.8174 22 1 9.1101 5.2187 8.1819 23 6 6.0417 3.1730 -1.3176 24 6 5.9717 4.6925 -1.3258 25 6 4.5565 5.2307 -1.2903 26 8 3.9146 4.8956 -0.0551 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2134 2.3180 0.0071 31 1 1.3260 4.5132 -0.0120 32 1 4.0250 0.3823 0.0026 33 1 6.8536 3.9673 0.8816 34 1 6.8255 1.9793 2.2793 35 1 5.1212 2.3505 2.6345 36 1 5.7949 4.5394 3.5838 37 1 7.4994 4.1689 3.2290 38 1 7.3764 2.1828 4.7078 39 1 5.6719 2.5528 5.0632 40 1 7.1436 1.8779 8.3707 41 1 7.0718 2.8607 -1.4893 42 1 5.4114 2.7809 -2.1158 43 1 6.5113 5.0717 -0.4579 44 1 6.4606 5.0599 -2.2281 45 1 4.5826 6.3151 -1.3981 46 1 3.9891 4.8020 -2.1164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178641057.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:38 Heat of formation + Delta-G solvation = -75.814027 kcal Electronic energy + Delta-G solvation = -25378.713938 eV Core-core repulsion = 21846.732815 eV Total energy + Delta-G solvation = -3531.981123 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.70942 -40.16327 -38.01002 -37.30302 -36.03612 -34.45377 -32.74599 -31.97964 -30.75874 -28.52780 -28.02360 -27.28674 -25.30283 -24.21196 -23.72079 -21.96834 -21.94920 -20.90250 -18.73725 -18.51990 -18.41965 -17.72432 -16.93515 -16.62832 -16.54382 -16.33857 -15.87749 -15.73287 -15.42584 -15.18593 -14.71631 -14.47733 -14.34413 -14.06319 -13.81497 -13.75340 -13.54513 -13.25150 -13.18827 -12.85433 -12.66843 -12.46811 -12.40917 -12.28464 -12.02520 -11.73639 -11.52612 -11.48856 -11.44702 -11.36996 -11.07618 -10.71490 -10.55335 -9.88377 -9.30038 -8.88367 -8.19953 -6.31552 0.28004 0.35776 1.39281 1.43372 1.51247 2.34783 2.41183 2.53798 3.06741 3.12671 3.26738 3.66508 3.83158 3.96683 4.00001 4.06614 4.20137 4.24188 4.26038 4.36485 4.40301 4.43088 4.54073 4.57566 4.62176 4.70633 4.72858 4.79290 4.90005 4.94697 4.96536 5.06514 5.10369 5.12801 5.14555 5.24061 5.30363 5.42799 5.50588 5.58255 5.60251 5.74691 5.85155 6.10597 6.27304 6.38834 6.55198 6.78767 6.84917 7.37555 8.91992 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.003480 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.113417 B = 8043.278115 C = 9268.833036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.104 3.896 4 C -0.192 4.192 5 C -0.111 4.111 6 C 0.080 3.920 7 C -0.076 4.076 8 C -0.150 4.150 9 C 0.124 3.876 10 H 0.050 0.950 11 N -0.665 5.665 12 C 0.078 3.922 13 C -0.087 4.087 14 C 0.027 3.973 15 C -0.544 4.544 16 H 0.060 0.940 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.264 1.264 23 C -0.114 4.114 24 C -0.146 4.146 25 C 0.064 3.936 26 O -0.324 6.324 27 H 0.070 0.930 28 H 0.118 0.882 29 H 0.060 0.940 30 H 0.155 0.845 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.348 0.652 34 H 0.023 0.977 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.054 0.946 38 H -0.009 1.009 39 H -0.016 1.016 40 H 0.264 0.736 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.409 1.073 -24.297 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.059 3.941 4 C -0.210 4.210 5 C -0.129 4.129 6 C 0.035 3.965 7 C -0.077 4.077 8 C -0.169 4.169 9 C 0.014 3.986 10 H 0.068 0.932 11 N -0.298 5.298 12 C -0.052 4.052 13 C -0.125 4.125 14 C -0.010 4.010 15 C -0.582 4.582 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.189 1.189 23 C -0.151 4.151 24 C -0.184 4.184 25 C -0.010 4.010 26 O -0.240 6.240 27 H 0.088 0.912 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.173 0.827 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.009 0.991 39 H 0.003 0.997 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.126 0.874 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.921 1.131 -23.910 26.310 hybrid contribution 0.775 -0.503 0.926 1.308 sum -10.147 0.628 -22.983 25.131 Atomic orbital electron populations 1.23344 0.76463 1.05546 1.02271 1.86060 1.23493 1.26622 1.88919 1.19095 0.92169 0.84946 0.97899 1.21301 1.01180 0.91013 1.07528 1.21359 0.93356 0.98536 0.99683 1.18418 0.90598 0.85298 1.02145 1.20160 0.96412 0.92023 0.99154 1.20301 0.92104 0.97764 1.06761 1.20620 0.90081 0.95355 0.92514 0.93176 1.60490 1.37643 1.30743 1.00960 1.21785 0.98693 0.94884 0.89792 1.21312 0.99805 0.97686 0.93672 1.18947 0.94420 0.94953 0.92726 1.21667 1.45840 0.96173 0.94532 0.92193 1.26030 0.95406 0.96960 1.01559 1.70106 1.50503 1.15995 1.20890 0.85466 0.79258 0.78603 0.77514 1.19235 1.20679 1.18924 1.21512 1.02399 0.96613 0.94622 1.21596 0.97975 0.95001 1.03836 1.22637 0.92727 1.01211 0.84461 1.86374 1.70725 1.30815 1.36127 0.91167 0.86399 0.92173 0.82720 0.83682 0.85115 0.83012 0.95903 0.93739 0.93454 0.92741 0.99069 0.99715 0.92760 0.89666 0.90764 0.90958 0.88646 0.87370 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.34 -7.98 10.50 -93.37 -0.98 -8.96 16 3 C 0.10 2.68 6.69 22.53 0.15 2.83 16 4 C -0.19 -4.31 9.03 22.36 0.20 -4.11 16 5 C -0.11 -2.72 10.00 22.41 0.22 -2.50 16 6 C 0.08 2.23 5.46 22.37 0.12 2.36 16 7 C -0.08 -2.13 4.63 -19.66 -0.09 -2.22 16 8 C -0.15 -4.16 9.64 22.35 0.22 -3.95 16 9 C 0.12 3.21 2.66 44.45 0.12 3.33 16 10 H 0.05 1.33 7.60 -2.39 -0.02 1.31 16 11 N -0.66 -20.17 4.45 -493.99 -2.20 -22.37 16 12 C 0.08 2.95 5.49 86.30 0.47 3.42 16 13 C -0.09 -3.87 5.41 30.59 0.17 -3.71 16 14 C 0.03 1.53 4.97 29.85 0.15 1.68 16 15 C -0.54 -32.55 9.11 25.60 0.23 -32.31 16 16 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 17 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 18 N -0.93 -58.99 13.29 21.45 0.28 -58.71 16 19 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 23 C -0.11 -2.11 5.35 30.25 0.16 -1.95 16 24 C -0.15 -2.50 5.32 29.80 0.16 -2.34 16 25 C 0.06 1.22 6.50 71.47 0.46 1.68 16 26 O -0.32 -9.01 9.24 -95.09 -0.88 -9.89 16 27 H 0.07 0.75 7.67 -2.39 -0.02 0.73 16 28 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 0.79 7.66 -2.39 -0.02 0.78 16 30 H 0.16 2.50 6.29 -2.91 -0.02 2.48 16 31 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.13 3.45 7.99 -2.91 -0.02 3.43 16 33 H 0.35 9.42 6.80 -89.70 -0.61 8.81 16 34 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 35 H 0.04 1.86 8.04 -2.39 -0.02 1.84 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 38 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 41 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.07 1.29 7.89 -2.39 -0.02 1.27 16 43 H 0.07 1.44 6.05 -2.38 -0.01 1.43 16 44 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 46 H 0.06 0.95 7.90 -2.38 -0.02 0.93 16 Total: -1.00 -72.98 365.04 2.93 -70.05 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.35 Total: 18.25 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 4.32 Total: -36.08 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -1.92 Total: -81.08 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.86 Total: -18.85 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.98 2.93 -70.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641057.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.763 kcal (2) G-P(sol) polarization free energy of solvation -72.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds