Wall clock time and date at job start Tue Mar 31 2020 10:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 116.99692 * 2 1 4 4 C 1.38724 * 120.01404 * 0.02562 * 3 2 1 5 5 C 1.38152 * 120.14950 * 179.62485 * 4 3 2 6 6 C 1.38855 * 119.73522 * 0.02562 * 5 4 3 7 7 C 1.37909 * 119.99927 * 0.69566 * 6 5 4 8 8 C 1.38063 * 120.51848 * 358.65632 * 7 6 5 9 9 C 1.51618 * 119.56502 * 177.90692 * 7 6 5 10 10 H 1.08996 * 109.60367 * 189.00094 * 9 7 6 11 11 N 1.46905 * 109.59688 * 309.31733 * 9 7 6 12 12 C 1.46901 * 110.99770 * 274.99764 * 11 9 7 13 13 C 1.53000 * 109.47230 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47374 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46845 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00829 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99387 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99524 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00316 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47111 * 90.00062 * 19 17 15 21 21 H 1.48496 * 109.47234 * 210.00237 * 19 17 15 22 22 H 1.48497 * 109.47202 * 330.00445 * 19 17 15 23 23 C 1.52890 * 108.70256 * 69.07606 * 9 7 6 24 24 C 1.52152 * 110.77302 * 276.79482 * 23 9 7 25 25 C 1.51428 * 113.44525 * 67.39863 * 24 23 9 26 26 O 1.36312 * 119.78419 * 181.81937 * 6 5 4 27 27 H 1.09002 * 109.47382 * 59.99808 * 1 2 3 28 28 H 1.09001 * 109.46938 * 299.99794 * 1 2 3 29 29 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.92208 * 359.65206 * 4 3 2 31 31 H 1.08004 * 120.13686 * 180.02562 * 5 4 3 32 32 H 1.08000 * 120.19397 * 181.02809 * 8 7 6 33 33 H 1.00904 * 110.99944 * 151.04550 * 11 9 7 34 34 H 1.09001 * 109.46963 * 299.99803 * 12 11 9 35 35 H 1.08996 * 109.47564 * 59.99689 * 12 11 9 36 36 H 1.09001 * 109.46616 * 299.99561 * 13 12 11 37 37 H 1.08999 * 109.46972 * 59.99228 * 13 12 11 38 38 H 1.09001 * 109.46884 * 299.99389 * 14 13 12 39 39 H 1.08996 * 109.47019 * 59.99413 * 14 13 12 40 40 H 0.97002 * 119.99417 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.21171 * 37.12103 * 23 9 7 42 42 H 1.08993 * 109.22018 * 156.50029 * 23 9 7 43 43 H 1.09002 * 108.69419 * 188.42335 * 24 23 9 44 44 H 1.09003 * 108.68855 * 306.37782 * 24 23 9 45 45 H 1.09003 * 109.17085 * 54.81164 * 25 24 23 46 46 H 1.09002 * 109.17771 * 174.02895 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9152 3.6077 0.0084 6 6 3.3020 3.6773 0.0151 7 6 4.0506 2.5192 -0.0004 8 6 3.4325 1.2846 0.0051 9 6 5.5637 2.6069 -0.0410 10 1 5.9831 1.6151 -0.2092 11 7 5.9761 3.5069 -1.1264 12 6 6.0475 2.7896 -2.4064 13 6 6.4798 3.7573 -3.5099 14 6 6.5535 3.0104 -4.8432 15 6 6.9787 3.9638 -5.9301 16 1 7.1761 4.9989 -5.6938 17 6 7.1146 3.5146 -7.2266 18 7 7.4852 4.3467 -8.1753 19 14 6.7725 1.7244 -7.6356 20 1 5.3402 1.5633 -7.9932 21 1 7.6189 1.3082 -8.7826 22 1 7.0862 0.8784 -6.4562 23 6 6.0589 3.1567 1.2969 24 6 5.9849 4.6763 1.3166 25 6 4.5683 5.2108 1.2950 26 8 3.9188 4.8920 0.0604 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2125 2.3175 -0.0047 31 1 1.3269 4.5134 0.0092 32 1 4.0240 0.3810 0.0095 33 1 6.8556 3.9526 -0.9121 34 1 6.7730 1.9798 -2.3291 35 1 5.0676 2.3776 -2.6473 36 1 5.7545 4.5673 -3.5873 37 1 7.4598 4.1689 -3.2688 38 1 7.2785 2.2001 -4.7661 39 1 5.5733 2.5992 -5.0840 40 1 7.5811 4.0307 -9.0873 41 1 5.4399 2.7569 2.1002 42 1 7.0922 2.8464 1.4520 43 1 6.4813 5.0386 2.2169 44 1 6.5174 5.0631 0.4477 45 1 4.0069 4.7704 2.1191 46 1 4.5923 6.2936 1.4177 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178641065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:43 Heat of formation + Delta-G solvation = -52.009086 kcal Electronic energy + Delta-G solvation = -25458.105228 eV Core-core repulsion = 21927.156365 eV Total energy + Delta-G solvation = -3530.948863 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81664 -39.32235 -36.86897 -36.44457 -34.44610 -32.71874 -31.64564 -30.85664 -29.76400 -27.62519 -27.17678 -25.95519 -24.32515 -22.84976 -22.13812 -21.13278 -20.31516 -19.76812 -17.81402 -17.63017 -16.85970 -16.66205 -15.94065 -15.71168 -15.50129 -14.95288 -14.72235 -14.33730 -14.22390 -14.00547 -13.78164 -13.44989 -13.24624 -12.99563 -12.75964 -12.54281 -12.44184 -12.08833 -11.94560 -11.66657 -11.47542 -11.27026 -10.99503 -10.87813 -10.68798 -10.67230 -10.58126 -9.89458 -9.84551 -9.63620 -9.51121 -9.09725 -8.94830 -8.46796 -8.12622 -7.98393 -5.97521 -3.94520 1.18922 1.28105 3.09137 3.35920 3.41803 3.42495 3.47087 3.96109 4.35369 4.51568 4.51723 4.67258 4.76517 4.80450 4.85536 4.89104 4.92757 5.06844 5.15163 5.22498 5.26031 5.36643 5.41808 5.47041 5.54268 5.68580 5.72201 5.79210 5.84833 5.87424 5.93789 5.96396 6.17799 6.20115 6.28874 6.46190 6.49748 6.67035 6.70428 7.02253 7.18399 7.31071 7.44635 7.53819 7.64733 7.69508 7.88020 8.62726 9.08638 9.65589 11.16174 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.003864 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.464209 B = 7244.415071 C = 8658.513757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.112 3.888 4 C -0.195 4.195 5 C -0.102 4.102 6 C 0.097 3.903 7 C -0.064 4.064 8 C -0.133 4.133 9 C 0.127 3.873 10 H 0.054 0.946 11 N -0.666 5.666 12 C 0.058 3.942 13 C -0.096 4.096 14 C -0.013 4.013 15 C -0.516 4.516 16 H 0.072 0.928 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.119 4.119 24 C -0.149 4.149 25 C 0.072 3.928 26 O -0.300 6.300 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.341 0.659 34 H 0.022 0.978 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.049 0.951 38 H 0.012 0.988 39 H 0.010 0.990 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.046 0.954 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.278 -5.104 25.127 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.068 3.932 4 C -0.214 4.214 5 C -0.121 4.121 6 C 0.053 3.947 7 C -0.065 4.065 8 C -0.153 4.153 9 C 0.017 3.983 10 H 0.072 0.928 11 N -0.299 5.299 12 C -0.070 4.070 13 C -0.134 4.134 14 C -0.051 4.051 15 C -0.554 4.554 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.157 4.157 24 C -0.187 4.187 25 C -0.003 4.003 26 O -0.216 6.216 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.161 0.839 34 H 0.040 0.960 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.064 0.936 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.754 -4.901 24.684 27.775 hybrid contribution 0.345 -1.504 -0.223 1.559 sum -11.409 -6.405 24.461 27.740 Atomic orbital electron populations 1.23034 0.78581 1.03790 1.01314 1.86078 1.21216 1.26914 1.89044 1.18936 0.92116 0.84123 0.98072 1.21046 0.99876 0.91779 1.08655 1.21080 0.93535 0.97580 0.99858 1.18214 0.89864 0.85229 1.01408 1.20053 0.95997 0.91847 0.98646 1.20172 0.91305 0.97693 1.06086 1.20510 0.90230 0.95679 0.91889 0.92803 1.60576 1.36639 1.31408 1.01285 1.22181 1.00105 0.95697 0.89041 1.21404 1.00280 0.97952 0.93810 1.19538 0.96087 0.96315 0.93116 1.21167 1.45359 0.97306 0.91581 0.91020 1.25040 0.94747 0.97430 0.96391 1.69929 1.48401 1.34965 1.01232 0.86772 0.78410 0.86073 0.77986 1.20325 1.21468 1.19109 1.21535 1.01437 0.96295 0.96438 1.21604 0.98385 0.95525 1.03181 1.22356 0.92331 1.00246 0.85371 1.86440 1.69743 1.30974 1.34469 0.92587 0.92802 0.88381 0.85339 0.85138 0.85156 0.83868 0.96020 0.91695 0.91887 0.93174 0.96958 0.97147 0.92851 0.91483 0.91208 0.91399 0.89654 0.93578 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.69 10.50 -19.69 -0.21 -3.89 16 3 C 0.11 1.40 6.69 -39.19 -0.26 1.14 16 4 C -0.19 -2.20 9.03 -39.43 -0.36 -2.56 16 5 C -0.10 -1.25 10.00 -39.38 -0.39 -1.64 16 6 C 0.10 1.33 5.47 -39.47 -0.22 1.12 16 7 C -0.06 -0.85 4.58 -104.35 -0.48 -1.33 16 8 C -0.13 -1.72 9.63 -39.44 -0.38 -2.10 16 9 C 0.13 1.58 2.66 -68.47 -0.18 1.40 16 10 H 0.05 0.67 7.60 -51.93 -0.39 0.27 16 11 N -0.67 -9.69 4.42 -107.53 -0.48 -10.16 16 12 C 0.06 1.01 5.49 -3.82 -0.02 0.99 16 13 C -0.10 -2.02 5.41 -26.73 -0.14 -2.16 16 14 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 15 C -0.52 -15.32 9.66 -34.44 -0.33 -15.66 16 16 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.06 1.95 5.47 -17.81 -0.10 1.85 16 18 N -0.91 -28.77 13.96 55.43 0.77 -27.99 16 19 Si 0.88 22.54 27.47 -169.99 -4.67 17.87 16 20 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 23 C -0.12 -1.15 5.36 -27.22 -0.15 -1.29 16 24 C -0.15 -1.38 5.32 -27.96 -0.15 -1.53 16 25 C 0.07 0.73 6.48 36.36 0.24 0.97 16 26 O -0.30 -4.18 9.25 -20.74 -0.19 -4.37 16 27 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.13 1.12 6.29 -52.49 -0.33 0.79 16 31 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.13 1.55 7.98 -52.49 -0.42 1.13 16 33 H 0.34 4.54 6.87 -39.29 -0.27 4.27 16 34 H 0.02 0.36 8.06 -51.93 -0.42 -0.05 16 35 H 0.06 1.21 8.01 -51.93 -0.42 0.79 16 36 H 0.06 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 41 H 0.07 0.61 7.90 -51.93 -0.41 0.20 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.90 6.09 -51.93 -0.32 0.58 16 45 H 0.05 0.42 7.89 -51.93 -0.41 0.01 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -33.75 361.43 -8.86 -42.61 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.49 Total: 0.55 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -2.04 Total: -20.05 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.30 Total: -38.16 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.40 Total: -8.27 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.75 -8.86 -42.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.398 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds