Wall clock time and date at job start Tue Mar 31 2020 10:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35983 * 116.99692 * 2 1 4 4 C 1.38724 * 120.01404 * 0.02562 * 3 2 1 5 5 C 1.38152 * 120.14950 * 179.62485 * 4 3 2 6 6 C 1.38855 * 119.73522 * 0.02562 * 5 4 3 7 7 C 1.37909 * 119.99927 * 0.69566 * 6 5 4 8 8 C 1.38063 * 120.51848 * 358.65632 * 7 6 5 9 9 C 1.51618 * 119.56502 * 177.90692 * 7 6 5 10 10 H 1.08996 * 109.60367 * 189.00094 * 9 7 6 11 11 N 1.46905 * 109.59688 * 309.31733 * 9 7 6 12 12 C 1.46901 * 110.99770 * 274.99764 * 11 9 7 13 13 C 1.53000 * 109.47230 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47374 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46845 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00829 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99387 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99524 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00316 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47111 * 90.00062 * 19 17 15 21 21 H 1.48496 * 109.47234 * 210.00237 * 19 17 15 22 22 H 1.48497 * 109.47202 * 330.00445 * 19 17 15 23 23 C 1.52890 * 108.70256 * 69.07606 * 9 7 6 24 24 C 1.52152 * 110.77302 * 276.79482 * 23 9 7 25 25 C 1.51428 * 113.44525 * 67.39863 * 24 23 9 26 26 O 1.36312 * 119.78419 * 181.81937 * 6 5 4 27 27 H 1.09002 * 109.47382 * 59.99808 * 1 2 3 28 28 H 1.09001 * 109.46938 * 299.99794 * 1 2 3 29 29 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.92208 * 359.65206 * 4 3 2 31 31 H 1.08004 * 120.13686 * 180.02562 * 5 4 3 32 32 H 1.08000 * 120.19397 * 181.02809 * 8 7 6 33 33 H 1.00904 * 110.99944 * 151.04550 * 11 9 7 34 34 H 1.09001 * 109.46963 * 299.99803 * 12 11 9 35 35 H 1.08996 * 109.47564 * 59.99689 * 12 11 9 36 36 H 1.09001 * 109.46616 * 299.99561 * 13 12 11 37 37 H 1.08999 * 109.46972 * 59.99228 * 13 12 11 38 38 H 1.09001 * 109.46884 * 299.99389 * 14 13 12 39 39 H 1.08996 * 109.47019 * 59.99413 * 14 13 12 40 40 H 0.97002 * 119.99417 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.21171 * 37.12103 * 23 9 7 42 42 H 1.08993 * 109.22018 * 156.50029 * 23 9 7 43 43 H 1.09002 * 108.69419 * 188.42335 * 24 23 9 44 44 H 1.09003 * 108.68855 * 306.37782 * 24 23 9 45 45 H 1.09003 * 109.17085 * 54.81164 * 25 24 23 46 46 H 1.09002 * 109.17771 * 174.02895 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2910 2.3752 0.0005 5 6 1.9152 3.6077 0.0084 6 6 3.3020 3.6773 0.0151 7 6 4.0506 2.5192 -0.0004 8 6 3.4325 1.2846 0.0051 9 6 5.5637 2.6069 -0.0410 10 1 5.9831 1.6151 -0.2092 11 7 5.9761 3.5069 -1.1264 12 6 6.0475 2.7896 -2.4064 13 6 6.4798 3.7573 -3.5099 14 6 6.5535 3.0104 -4.8432 15 6 6.9787 3.9638 -5.9301 16 1 7.1761 4.9989 -5.6938 17 6 7.1146 3.5146 -7.2266 18 7 7.4852 4.3467 -8.1753 19 14 6.7725 1.7244 -7.6356 20 1 5.3402 1.5633 -7.9932 21 1 7.6189 1.3082 -8.7826 22 1 7.0862 0.8784 -6.4562 23 6 6.0589 3.1567 1.2969 24 6 5.9849 4.6763 1.3166 25 6 4.5683 5.2108 1.2950 26 8 3.9188 4.8920 0.0604 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2125 2.3175 -0.0047 31 1 1.3269 4.5134 0.0092 32 1 4.0240 0.3810 0.0095 33 1 6.8556 3.9526 -0.9121 34 1 6.7730 1.9798 -2.3291 35 1 5.0676 2.3776 -2.6473 36 1 5.7545 4.5673 -3.5873 37 1 7.4598 4.1689 -3.2688 38 1 7.2785 2.2001 -4.7661 39 1 5.5733 2.5992 -5.0840 40 1 7.5811 4.0307 -9.0873 41 1 5.4399 2.7569 2.1002 42 1 7.0922 2.8464 1.4520 43 1 6.4813 5.0386 2.2169 44 1 6.5174 5.0631 0.4477 45 1 4.0069 4.7704 2.1191 46 1 4.5923 6.2936 1.4177 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178641065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:42 Heat of formation + Delta-G solvation = -73.393918 kcal Electronic energy + Delta-G solvation = -25459.032544 eV Core-core repulsion = 21927.156365 eV Total energy + Delta-G solvation = -3531.876179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.70766 -40.15697 -38.01277 -37.29703 -36.04344 -34.47118 -32.87836 -32.08771 -30.84180 -28.67723 -28.05179 -27.35589 -25.26381 -23.93275 -23.69068 -21.94735 -21.91196 -20.89456 -18.94083 -18.68644 -18.46177 -17.72657 -16.94877 -16.62521 -16.42064 -16.28523 -15.89056 -15.73341 -15.44980 -15.14938 -14.77520 -14.71118 -14.44659 -14.10716 -13.85996 -13.75091 -13.59394 -13.33732 -13.23568 -12.88288 -12.69313 -12.53819 -12.35153 -12.06385 -11.81313 -11.73882 -11.55399 -11.51954 -11.46741 -11.37863 -11.20921 -10.77107 -10.72031 -9.87477 -9.27602 -8.88285 -8.30084 -6.33997 0.27671 0.36294 1.34475 1.35941 1.48471 2.35100 2.35499 2.53121 3.04902 3.07532 3.26728 3.67158 3.83389 3.97281 4.00145 4.07403 4.19701 4.24179 4.25278 4.34505 4.40375 4.42198 4.53296 4.57635 4.61678 4.66984 4.73145 4.78011 4.85716 4.93726 4.94965 4.98819 5.07433 5.10084 5.13401 5.14545 5.30691 5.42755 5.49904 5.58349 5.60087 5.62585 5.66103 6.15091 6.29874 6.38827 6.54931 6.73824 6.78644 7.30347 8.87026 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.003864 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.464209 B = 7244.415071 C = 8658.513757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.104 3.896 4 C -0.192 4.192 5 C -0.112 4.112 6 C 0.079 3.921 7 C -0.076 4.076 8 C -0.147 4.147 9 C 0.126 3.874 10 H 0.056 0.944 11 N -0.670 5.670 12 C 0.075 3.925 13 C -0.085 4.085 14 C -0.009 4.009 15 C -0.533 4.533 16 H 0.030 0.970 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.953 3.047 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.247 1.247 23 C -0.114 4.114 24 C -0.147 4.147 25 C 0.065 3.935 26 O -0.326 6.326 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.154 0.846 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.348 0.652 34 H 0.032 0.968 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.020 0.980 39 H 0.012 0.988 40 H 0.267 0.733 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.099 -7.001 26.829 30.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.059 3.941 4 C -0.210 4.210 5 C -0.130 4.130 6 C 0.035 3.965 7 C -0.077 4.077 8 C -0.166 4.166 9 C 0.016 3.984 10 H 0.074 0.926 11 N -0.303 5.303 12 C -0.054 4.054 13 C -0.123 4.123 14 C -0.047 4.047 15 C -0.571 4.571 16 H 0.048 0.952 17 C -0.194 4.194 18 N -0.593 5.593 19 Si 0.776 3.224 20 H -0.193 1.193 21 H -0.206 1.206 22 H -0.171 1.171 23 C -0.151 4.151 24 C -0.184 4.184 25 C -0.010 4.010 26 O -0.242 6.242 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.136 0.864 30 H 0.172 0.828 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.578 -6.792 26.417 30.037 hybrid contribution 0.553 -0.812 -0.724 1.221 sum -12.025 -7.604 25.693 29.370 Atomic orbital electron populations 1.23337 0.76524 1.05526 1.02233 1.86058 1.23414 1.26591 1.88925 1.19092 0.92242 0.84851 0.97922 1.21306 1.01150 0.91046 1.07518 1.21318 0.93363 0.98536 0.99819 1.18462 0.90590 0.85329 1.02144 1.20160 0.96437 0.91939 0.99192 1.20332 0.91965 0.97785 1.06563 1.20599 0.89980 0.95417 0.92402 0.92626 1.60458 1.37192 1.31798 1.00885 1.21841 0.99411 0.94859 0.89320 1.21203 0.99909 0.97783 0.93446 1.19474 0.95904 0.95735 0.93552 1.21503 1.45562 0.96518 0.93475 0.95156 1.26044 0.94328 1.02892 0.96092 1.70080 1.49659 1.37623 1.01906 0.85624 0.78692 0.79615 0.78511 1.19341 1.20586 1.17081 1.21522 1.02353 0.96412 0.94842 1.21589 0.97814 0.95278 1.03752 1.22584 0.92710 1.01220 0.84440 1.86391 1.70264 1.31202 1.36382 0.92159 0.91308 0.86391 0.82841 0.83940 0.84754 0.83057 0.94993 0.92931 0.93858 0.93102 0.96123 0.96973 0.92463 0.90749 0.89610 0.88826 0.91076 0.92655 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.28 10.50 -93.35 -0.98 -8.26 16 3 C 0.10 2.47 6.69 22.52 0.15 2.62 16 4 C -0.19 -4.05 9.03 22.37 0.20 -3.85 16 5 C -0.11 -2.64 10.00 22.40 0.22 -2.42 16 6 C 0.08 2.12 5.47 22.34 0.12 2.24 16 7 C -0.08 -1.96 4.58 -19.69 -0.09 -2.05 16 8 C -0.15 -3.70 9.63 22.36 0.22 -3.48 16 9 C 0.13 2.96 2.66 44.42 0.12 3.08 16 10 H 0.06 1.29 7.60 -2.39 -0.02 1.27 16 11 N -0.67 -18.94 4.42 -494.11 -2.18 -21.13 16 12 C 0.07 2.54 5.49 86.30 0.47 3.02 16 13 C -0.09 -3.59 5.41 30.59 0.17 -3.43 16 14 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 15 C -0.53 -32.37 9.66 25.60 0.25 -32.12 16 16 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 17 C 0.00 0.18 5.47 84.65 0.46 0.64 16 18 N -0.95 -61.71 13.96 21.45 0.30 -61.41 16 19 Si 0.95 46.07 27.47 68.60 1.88 47.95 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 23 C -0.11 -1.95 5.36 30.28 0.16 -1.79 16 24 C -0.15 -2.44 5.32 29.80 0.16 -2.29 16 25 C 0.06 1.23 6.48 71.47 0.46 1.69 16 26 O -0.33 -8.92 9.25 -97.13 -0.90 -9.82 16 27 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 28 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 29 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.15 2.32 6.29 -2.91 -0.02 2.30 16 31 H 0.14 2.87 8.06 -2.91 -0.02 2.84 16 32 H 0.13 3.11 7.98 -2.91 -0.02 3.08 16 33 H 0.35 8.93 6.87 -89.69 -0.62 8.32 16 34 H 0.03 1.02 8.06 -2.39 -0.02 1.00 16 35 H 0.05 1.92 8.01 -2.39 -0.02 1.90 16 36 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 39 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 40 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 41 H 0.07 1.19 7.90 -2.38 -0.02 1.18 16 42 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.41 6.09 -2.39 -0.01 1.39 16 45 H 0.06 0.93 7.89 -2.39 -0.02 0.91 16 46 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -74.00 361.43 2.72 -71.28 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.29 Total: 18.48 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 4.31 Total: -37.11 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -1.89 Total: -82.53 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.88 Total: -18.08 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.88 Total: 47.95 kcal Total: -74.00 2.72 -71.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178641065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.113 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds