Wall clock time and date at job start Tue Mar 31 2020 10:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45205 * 109.46743 * 2 1 4 4 C 1.34223 * 116.99800 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00609 * 0.02562 * 4 3 2 6 6 C 1.50711 * 119.99878 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46987 * 300.00413 * 6 4 3 8 8 C 1.53005 * 109.46794 * 60.00186 * 6 4 3 9 9 C 1.52995 * 109.47371 * 52.49538 * 8 6 4 10 10 C 1.52999 * 109.47517 * 69.35597 * 9 8 6 11 11 C 1.53002 * 109.47090 * 189.36443 * 9 8 6 12 12 N 1.46505 * 109.46829 * 179.97438 * 6 4 3 13 13 C 1.38856 * 119.99507 * 164.16890 * 12 6 4 14 14 C 1.39569 * 119.84203 * 1.17814 * 13 12 6 15 15 C 1.36343 * 120.16122 * 179.71629 * 14 13 12 16 16 C 1.40889 * 119.83413 * 0.55810 * 15 14 13 17 17 C 1.41133 * 120.15967 * 179.69520 * 16 15 14 18 18 H 1.07994 * 120.00376 * 198.64047 * 17 16 15 19 19 C 1.39866 * 119.99382 * 18.64297 * 17 16 15 20 20 N 1.30904 * 120.00487 * 25.45029 * 19 17 16 21 21 Si 1.86806 * 119.99738 * 205.44723 * 19 17 16 22 22 H 1.48492 * 109.47109 * 90.00478 * 21 19 17 23 23 H 1.48501 * 109.46744 * 210.00173 * 21 19 17 24 24 H 1.48498 * 109.47221 * 329.99856 * 21 19 17 25 25 C 1.40895 * 119.68713 * 359.71809 * 16 15 14 26 26 C 1.36338 * 119.83675 * 0.02562 * 25 16 15 27 27 H 1.08999 * 109.47549 * 299.99631 * 1 2 3 28 28 H 1.08999 * 109.47314 * 59.99742 * 1 2 3 29 29 H 1.09000 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47549 * 240.00369 * 2 1 3 31 31 H 1.08998 * 109.47147 * 119.99730 * 2 1 3 32 32 H 1.09003 * 109.46439 * 172.48950 * 8 6 4 33 33 H 1.08998 * 109.47196 * 292.48902 * 8 6 4 34 34 H 1.09006 * 109.47078 * 309.36051 * 9 8 6 35 35 H 1.08998 * 109.46583 * 48.93296 * 10 9 8 36 36 H 1.09004 * 109.46954 * 168.92738 * 10 9 8 37 37 H 1.09001 * 109.47450 * 288.93502 * 10 9 8 38 38 H 1.08997 * 109.47435 * 59.99448 * 11 9 8 39 39 H 1.08998 * 109.46819 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.46693 * 299.99125 * 11 9 8 41 41 H 0.96996 * 119.99989 * 343.89812 * 12 6 4 42 42 H 1.08000 * 119.91931 * 359.97438 * 14 13 12 43 43 H 1.07995 * 120.08772 * 180.28093 * 15 14 13 44 44 H 0.96996 * 120.00399 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.07635 * 179.97438 * 25 16 15 46 46 H 1.07997 * 119.91942 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5869 0.0005 6 6 3.9205 2.9376 0.0012 7 1 3.5848 3.4700 -0.8887 8 6 3.4485 3.6841 1.2505 9 6 3.7549 2.8448 2.4925 10 6 5.2679 2.7959 2.7144 11 6 3.0804 3.4746 3.7128 12 7 5.3836 2.8610 0.0023 13 6 6.1376 3.9801 -0.3251 14 6 5.4989 5.1828 -0.6306 15 6 6.2330 6.2872 -0.9473 16 6 7.6394 6.2090 -0.9771 17 6 8.4059 7.3463 -1.3103 18 1 9.4322 7.2322 -1.6264 19 6 7.8362 8.6212 -1.2310 20 7 6.8337 8.8409 -0.4183 21 14 8.5059 10.0106 -2.2848 22 1 7.7838 10.0402 -3.5821 23 1 8.3119 11.3036 -1.5807 24 1 9.9543 9.7926 -2.5293 25 6 8.2772 4.9900 -0.6731 26 6 7.5304 3.8951 -0.3531 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9680 4.6398 1.3207 33 1 2.3745 3.8583 1.1856 34 1 3.3758 1.8328 2.3497 35 1 5.6757 3.8053 2.6611 36 1 5.4776 2.3708 3.6960 37 1 5.7284 2.1769 1.9444 38 1 2.0025 3.5094 3.5547 39 1 3.2984 2.8764 4.5975 40 1 3.4595 4.4865 3.8556 41 1 5.8255 2.0296 0.2355 42 1 4.4205 5.2399 -0.6121 43 1 5.7377 7.2184 -1.1791 44 1 6.4384 9.7249 -0.3636 45 1 9.3548 4.9229 -0.6944 46 1 8.0178 2.9600 -0.1203 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180958491.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:47 Heat of formation + Delta-G solvation = -84.945041 kcal Electronic energy + Delta-G solvation = -25626.808667 eV Core-core repulsion = 22094.431594 eV Total energy + Delta-G solvation = -3532.377073 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94678 -39.93451 -38.30105 -37.51639 -35.91818 -34.50923 -32.77961 -31.56269 -31.22329 -29.63664 -27.93655 -26.55609 -25.52200 -23.85888 -23.18392 -22.38953 -21.59016 -20.71165 -19.15817 -18.86296 -18.18616 -17.74656 -17.14616 -16.81063 -16.25739 -15.91008 -15.64658 -15.24751 -14.83294 -14.67956 -14.45575 -14.37565 -13.99956 -13.73782 -13.63943 -13.57672 -13.36416 -13.21355 -13.03351 -12.91472 -12.73764 -12.63564 -12.52119 -12.46879 -12.30165 -11.89781 -11.71293 -11.67760 -11.56771 -11.53257 -11.35882 -11.14320 -10.94047 -10.24994 -9.35816 -8.61991 -8.20418 -5.95208 1.04024 1.12656 1.22092 1.41757 1.45583 1.53363 1.62741 2.27644 2.79368 2.83524 3.55361 3.74163 3.87433 3.95326 4.00660 4.04151 4.08014 4.30983 4.33734 4.38281 4.51448 4.52819 4.73747 4.78172 4.81129 4.85872 4.93732 5.01344 5.02568 5.08237 5.11423 5.13467 5.17239 5.28678 5.29166 5.38562 5.43559 5.47500 5.52050 5.69603 5.80523 5.98077 6.20960 6.40610 6.57377 6.67112 6.86072 7.08089 7.10014 7.27960 8.42882 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.003313 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.791179 B = 8449.730950 C = 8566.908249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.476 3.524 5 O -0.529 6.529 6 C 0.172 3.828 7 H 0.107 0.893 8 C -0.125 4.125 9 C -0.086 4.086 10 C -0.141 4.141 11 C -0.141 4.141 12 N -0.734 5.734 13 C 0.114 3.886 14 C -0.161 4.161 15 C -0.154 4.154 16 C 0.042 3.958 17 C -0.507 4.507 18 H 0.065 0.935 19 C 0.040 3.960 20 N -0.823 5.823 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.263 1.263 25 C -0.204 4.204 26 C -0.156 4.156 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.398 0.602 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.285 0.715 45 H 0.092 0.908 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.021 -12.133 3.796 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.268 6.268 4 C 0.319 3.681 5 O -0.419 6.419 6 C 0.065 3.935 7 H 0.124 0.876 8 C -0.164 4.164 9 C -0.105 4.105 10 C -0.198 4.198 11 C -0.199 4.199 12 N -0.373 5.373 13 C 0.016 3.984 14 C -0.183 4.183 15 C -0.174 4.174 16 C 0.039 3.961 17 C -0.537 4.537 18 H 0.084 0.916 19 C -0.174 4.174 20 N -0.450 5.450 21 Si 0.792 3.208 22 H -0.189 1.189 23 H -0.194 1.194 24 H -0.187 1.187 25 C -0.225 4.225 26 C -0.178 4.178 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.236 0.764 42 H 0.131 0.869 43 H 0.120 0.880 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.161 -12.213 3.872 19.096 hybrid contribution 0.921 0.285 -0.359 1.028 sum -13.240 -11.927 3.514 18.163 Atomic orbital electron populations 1.21824 0.90150 1.04416 1.03851 1.23342 0.97237 0.78968 1.02579 1.86509 1.22914 1.33948 1.83437 1.23656 0.81235 0.92133 0.71054 1.90623 1.61024 1.43521 1.46703 1.20245 0.82839 0.89071 1.01390 0.87586 1.22188 1.02472 0.99270 0.92457 1.21035 0.95880 0.98149 0.95399 1.21956 0.95795 1.01305 1.00764 1.21797 1.00722 1.00616 0.96716 1.43861 1.01843 1.11698 1.79879 1.17162 0.89808 0.87170 1.04303 1.20271 0.98365 0.92274 1.07399 1.20873 0.93911 0.97534 1.05086 1.17799 0.92850 0.92876 0.92537 1.19575 0.99389 0.91691 1.43084 0.91644 1.26565 0.94644 1.01989 0.94193 1.69938 1.22147 1.24565 1.28375 0.85392 0.79606 0.76743 0.79068 1.18926 1.19403 1.18710 1.20626 0.97702 0.94426 1.09707 1.19995 0.92081 0.98078 1.07661 0.91046 0.91292 0.88111 0.91454 0.91174 0.90831 0.88508 0.92565 0.94309 0.93006 0.92725 0.91364 0.92123 0.93122 0.76433 0.86889 0.87992 0.90466 0.89000 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 71.98 0.74 -0.85 16 2 C 0.05 0.90 6.19 71.98 0.45 1.35 16 3 O -0.35 -7.98 10.15 -51.35 -0.52 -8.50 16 4 C 0.48 12.95 5.56 71.24 0.40 13.35 16 5 O -0.53 -16.72 15.49 21.98 0.34 -16.38 16 6 C 0.17 4.91 2.50 44.25 0.11 5.02 16 7 H 0.11 2.99 7.06 -2.39 -0.02 2.97 16 8 C -0.12 -3.25 4.31 30.59 0.13 -3.12 16 9 C -0.09 -2.14 2.71 -10.79 -0.03 -2.16 16 10 C -0.14 -4.04 8.32 71.98 0.60 -3.44 16 11 C -0.14 -2.96 9.15 71.98 0.66 -2.31 16 12 N -0.73 -24.71 3.18 -322.06 -1.03 -25.74 16 13 C 0.11 4.68 6.52 38.67 0.25 4.94 16 14 C -0.16 -7.14 8.20 22.15 0.18 -6.96 16 15 C -0.15 -8.02 8.71 22.48 0.20 -7.83 16 16 C 0.04 2.32 5.62 -21.27 -0.12 2.20 16 17 C -0.51 -28.23 9.01 23.38 0.21 -28.02 16 18 H 0.07 3.59 7.96 -2.91 -0.02 3.56 16 19 C 0.04 2.09 5.01 85.23 0.43 2.52 16 20 N -0.82 -43.56 11.05 21.82 0.24 -43.32 16 21 Si 0.97 39.41 29.63 68.60 2.03 41.44 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 24 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 25 C -0.20 -10.25 9.74 22.48 0.22 -10.03 16 26 C -0.16 -6.89 9.82 22.15 0.22 -6.67 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.07 2.28 6.38 -2.39 -0.02 2.27 16 33 H 0.10 2.07 8.12 -2.39 -0.02 2.06 16 34 H 0.06 1.39 6.65 -2.38 -0.02 1.37 16 35 H 0.04 1.29 8.01 -2.39 -0.02 1.27 16 36 H 0.05 1.33 8.10 -2.38 -0.02 1.31 16 37 H 0.05 1.67 5.24 -2.39 -0.01 1.65 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.40 13.36 6.05 -92.71 -0.56 12.79 16 42 H 0.11 4.37 5.70 -2.91 -0.02 4.35 16 43 H 0.10 5.57 6.01 -2.91 -0.02 5.55 16 44 H 0.28 13.63 8.30 -92.71 -0.77 12.86 16 45 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 46 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -61.25 367.29 6.12 -55.13 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: 0.41 Total: 39.38 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 4.64 Total: -42.01 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -0.78 Total: -69.06 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: -0.18 Total: -24.88 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -61.25 6.12 -55.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180958491.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.811 kcal (2) G-P(sol) polarization free energy of solvation -61.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds