Wall clock time and date at job start Tue Mar 31 2020 10:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45197 * 109.47259 * 2 1 4 4 C 1.34236 * 117.00253 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99310 * 0.02562 * 4 3 2 6 6 C 1.50691 * 120.00189 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47225 * 60.00106 * 6 4 3 8 8 C 1.53000 * 109.47468 * 299.99995 * 6 4 3 9 9 C 1.53005 * 109.46733 * 66.67734 * 8 6 4 10 10 C 1.52997 * 109.46939 * 65.39099 * 9 8 6 11 11 C 1.53003 * 109.46682 * 185.38350 * 9 8 6 12 12 N 1.46503 * 109.47203 * 180.02562 * 6 4 3 13 13 C 1.38849 * 120.00026 * 201.53310 * 12 6 4 14 14 C 1.39567 * 119.84755 * 5.43295 * 13 12 6 15 15 C 1.36336 * 120.16533 * 180.27820 * 14 13 12 16 16 C 1.40892 * 119.83375 * 359.48005 * 15 14 13 17 17 C 1.41130 * 120.15297 * 180.27543 * 16 15 14 18 18 H 1.07998 * 120.00581 * 29.33053 * 17 16 15 19 19 C 1.39874 * 120.00007 * 209.33037 * 17 16 15 20 20 N 1.30906 * 119.99741 * 10.61738 * 19 17 16 21 21 Si 1.86798 * 120.00167 * 190.61287 * 19 17 16 22 22 H 1.48503 * 109.47202 * 60.00075 * 21 19 17 23 23 H 1.48498 * 109.46982 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47074 * 299.99844 * 21 19 17 25 25 C 1.40885 * 119.69028 * 0.24938 * 16 15 14 26 26 C 1.36341 * 119.83691 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47218 * 300.00554 * 1 2 3 29 29 H 1.09008 * 109.47296 * 59.99515 * 1 2 3 30 30 H 1.09006 * 109.47154 * 239.99963 * 2 1 3 31 31 H 1.08998 * 109.47201 * 119.99927 * 2 1 3 32 32 H 1.08995 * 109.47264 * 186.68028 * 8 6 4 33 33 H 1.08999 * 109.46973 * 306.68439 * 8 6 4 34 34 H 1.08990 * 109.47202 * 305.38556 * 9 8 6 35 35 H 1.09003 * 109.47646 * 63.89346 * 10 9 8 36 36 H 1.08998 * 109.47442 * 183.90279 * 10 9 8 37 37 H 1.09008 * 109.47004 * 303.89825 * 10 9 8 38 38 H 1.08996 * 109.47002 * 60.00469 * 11 9 8 39 39 H 1.08999 * 109.46744 * 180.02562 * 11 9 8 40 40 H 1.08997 * 109.47127 * 300.00206 * 11 9 8 41 41 H 0.97005 * 119.99994 * 21.52828 * 12 6 4 42 42 H 1.08001 * 119.91569 * 0.03451 * 14 13 12 43 43 H 1.07999 * 120.08432 * 179.75233 * 15 14 13 44 44 H 0.96997 * 119.99637 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.08064 * 180.02562 * 25 16 15 46 46 H 1.08000 * 119.92338 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0806 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5845 3.4692 0.8911 8 6 3.4497 3.6847 -1.2480 9 6 1.9386 3.9110 -1.1674 10 6 1.6252 4.8507 -0.0014 11 6 1.4464 4.5374 -2.4737 12 7 5.3837 2.8606 0.0010 13 6 6.1356 3.9411 0.4429 14 6 5.4967 5.0538 0.9920 15 6 6.2282 6.1207 1.4226 16 6 7.6333 6.0934 1.3223 17 6 8.3975 7.1916 1.7714 18 1 8.0321 7.8102 2.5778 19 6 9.6282 7.4790 1.1721 20 7 9.9772 6.8680 0.0682 21 14 10.7737 8.7349 1.9467 22 1 11.1365 8.2946 3.3177 23 1 12.0037 8.8568 1.1236 24 1 10.0912 10.0520 2.0141 25 6 8.2718 4.9645 0.7722 26 6 7.5272 3.9072 0.3404 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9584 4.6467 -1.3093 33 1 3.6817 3.0938 -2.1340 34 1 1.4362 2.9567 -1.0101 35 1 2.0703 5.8273 -0.1920 36 1 0.5451 4.9571 0.0994 37 1 2.0370 4.4373 0.9193 38 1 1.6697 3.8679 -3.3043 39 1 0.3700 4.6990 -2.4161 40 1 1.9489 5.4917 -2.6309 41 1 5.8272 2.0550 -0.3076 42 1 4.4198 5.0714 1.0723 43 1 5.7322 6.9827 1.8437 44 1 10.8305 7.0676 -0.3476 45 1 9.3485 4.9367 0.6927 46 1 8.0152 3.0412 -0.0820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180958512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:54 Heat of formation + Delta-G solvation = -79.949799 kcal Electronic energy + Delta-G solvation = -25332.868048 eV Core-core repulsion = 21800.707585 eV Total energy + Delta-G solvation = -3532.160463 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.75947 -38.25161 -36.81976 -36.65535 -34.53366 -32.87933 -31.94514 -30.13565 -29.20875 -27.87278 -27.10264 -25.13061 -24.20788 -23.02246 -21.62404 -20.67649 -20.05266 -19.69347 -17.85482 -17.21809 -16.94066 -16.55038 -15.69052 -15.12339 -15.00385 -14.76200 -14.27715 -13.88648 -13.83801 -13.70421 -13.06960 -12.86722 -12.77039 -12.45939 -12.27353 -12.17290 -12.09205 -11.99201 -11.92750 -11.76870 -11.65431 -11.34610 -11.04485 -10.96886 -10.84558 -10.77801 -10.67810 -10.43539 -10.30390 -10.20444 -9.65541 -9.30508 -9.26086 -8.62515 -7.50935 -6.58386 -6.40384 -4.08036 2.17288 2.47988 2.92755 3.08724 3.15382 3.18564 3.33112 4.06825 4.16481 4.57516 4.69106 4.74855 4.77879 4.92239 4.99365 5.02497 5.07457 5.21084 5.41759 5.50986 5.54384 5.67753 5.70649 5.80038 5.81134 5.84577 5.95310 6.03530 6.06950 6.22938 6.24714 6.28230 6.30864 6.39205 6.59607 6.81421 7.04195 7.16149 7.30598 7.52929 7.65312 7.70317 7.78387 8.14706 8.32280 8.41427 8.62616 8.77873 9.06522 9.13212 10.42392 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.003122 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.835748 B = 8967.893109 C = 9553.884755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.349 6.349 4 C 0.461 3.539 5 O -0.505 6.505 6 C 0.174 3.826 7 H 0.110 0.890 8 C -0.126 4.126 9 C -0.107 4.107 10 C -0.148 4.148 11 C -0.144 4.144 12 N -0.746 5.746 13 C 0.096 3.904 14 C -0.163 4.163 15 C -0.183 4.183 16 C 0.076 3.924 17 C -0.467 4.467 18 H 0.071 0.929 19 C 0.072 3.928 20 N -0.816 5.816 21 Si 0.907 3.093 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.268 1.268 25 C -0.115 4.115 26 C -0.160 4.160 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.395 0.605 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.276 0.724 45 H 0.121 0.879 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.607 -8.638 -2.737 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.266 6.266 4 C 0.303 3.697 5 O -0.392 6.392 6 C 0.066 3.934 7 H 0.127 0.873 8 C -0.165 4.165 9 C -0.126 4.126 10 C -0.205 4.205 11 C -0.201 4.201 12 N -0.384 5.384 13 C 0.000 4.000 14 C -0.185 4.185 15 C -0.204 4.204 16 C 0.073 3.927 17 C -0.499 4.499 18 H 0.089 0.911 19 C -0.142 4.142 20 N -0.444 5.444 21 Si 0.732 3.268 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.193 1.193 25 C -0.135 4.135 26 C -0.181 4.181 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.230 0.770 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.087 0.913 45 H 0.139 0.861 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.354 -8.873 -2.867 18.826 hybrid contribution 0.812 0.081 0.094 0.822 sum -15.542 -8.792 -2.772 18.071 Atomic orbital electron populations 1.21798 0.92628 1.02832 1.03584 1.23031 0.95355 0.80807 1.02531 1.86582 1.24353 1.31689 1.83938 1.24171 0.80627 0.93019 0.71835 1.90633 1.60384 1.43026 1.45197 1.20250 0.84098 0.87953 1.01147 0.87295 1.22130 0.95731 1.02041 0.96602 1.21346 0.95310 1.00440 0.95491 1.21886 1.00984 0.99646 0.97972 1.21803 1.00614 1.00857 0.96848 1.43723 1.00828 1.17621 1.76193 1.17281 0.90175 0.88874 1.03716 1.19909 0.97113 0.95062 1.06371 1.20606 0.94093 0.97703 1.07949 1.17514 0.90709 0.92409 0.92064 1.19332 1.02186 1.11358 1.16976 0.91051 1.25787 0.98052 0.96531 0.93866 1.69802 1.21412 1.38264 1.14873 0.86404 0.79350 0.81121 0.79920 1.19174 1.20614 1.19320 1.20974 0.99637 0.91708 1.01174 1.20062 0.91332 0.99649 1.07083 0.90422 0.91399 0.91443 0.91363 0.91327 0.89210 0.91821 0.89207 0.92398 0.92925 0.92616 0.93091 0.92893 0.92598 0.76956 0.89213 0.88976 0.91327 0.86091 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 10.29 37.15 0.38 -0.61 16 2 C 0.06 0.54 6.19 37.15 0.23 0.77 16 3 O -0.35 -4.15 7.38 -39.27 -0.29 -4.44 16 4 C 0.46 6.71 7.31 36.00 0.26 6.98 16 5 O -0.51 -8.58 15.54 -18.75 -0.29 -8.87 16 6 C 0.17 2.63 2.18 -69.08 -0.15 2.48 16 7 H 0.11 1.65 4.51 -51.93 -0.23 1.41 16 8 C -0.13 -1.71 4.34 -26.73 -0.12 -1.82 16 9 C -0.11 -1.19 2.75 -90.62 -0.25 -1.44 16 10 C -0.15 -1.62 9.05 37.16 0.34 -1.28 16 11 C -0.14 -1.44 9.19 37.16 0.34 -1.10 16 12 N -0.75 -13.55 5.14 -53.16 -0.27 -13.82 16 13 C 0.10 2.05 6.56 -83.69 -0.55 1.51 16 14 C -0.16 -3.52 8.72 -39.77 -0.35 -3.86 16 15 C -0.18 -4.42 9.74 -39.26 -0.38 -4.81 16 16 C 0.08 2.02 5.55 -106.79 -0.59 1.43 16 17 C -0.47 -12.59 9.04 -37.87 -0.34 -12.93 16 18 H 0.07 1.85 7.87 -52.49 -0.41 1.44 16 19 C 0.07 1.85 5.25 -17.33 -0.09 1.76 16 20 N -0.82 -21.68 10.86 55.54 0.60 -21.08 16 21 Si 0.91 19.33 29.57 -169.99 -5.03 14.31 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 C -0.11 -3.00 8.59 -39.26 -0.34 -3.33 16 26 C -0.16 -3.73 9.82 -39.77 -0.39 -4.12 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 31 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 32 H 0.09 1.39 7.68 -51.93 -0.40 0.99 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.98 5.24 -51.93 -0.27 0.71 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.63 6.28 -51.92 -0.33 0.31 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.40 7.16 7.71 -40.82 -0.31 6.85 16 42 H 0.09 1.68 6.17 -52.49 -0.32 1.36 16 43 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 44 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 45 H 0.12 3.28 6.25 -52.49 -0.33 2.96 16 46 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -28.63 370.04 -8.94 -37.57 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -7.24 Total: 11.15 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.99 Total: -20.39 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.33 Total: -34.90 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.58 Total: -13.31 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.63 -8.94 -37.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180958512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.379 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds