Wall clock time and date at job start Tue Mar 31 2020 10:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45197 * 109.47259 * 2 1 4 4 C 1.34236 * 117.00253 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99310 * 0.02562 * 4 3 2 6 6 C 1.50691 * 120.00189 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47225 * 60.00106 * 6 4 3 8 8 C 1.53000 * 109.47468 * 299.99995 * 6 4 3 9 9 C 1.53005 * 109.46733 * 66.67734 * 8 6 4 10 10 C 1.52997 * 109.46939 * 65.39099 * 9 8 6 11 11 C 1.53003 * 109.46682 * 185.38350 * 9 8 6 12 12 N 1.46503 * 109.47203 * 180.02562 * 6 4 3 13 13 C 1.38849 * 120.00026 * 201.53310 * 12 6 4 14 14 C 1.39567 * 119.84755 * 5.43295 * 13 12 6 15 15 C 1.36336 * 120.16533 * 180.27820 * 14 13 12 16 16 C 1.40892 * 119.83375 * 359.48005 * 15 14 13 17 17 C 1.41130 * 120.15297 * 180.27543 * 16 15 14 18 18 H 1.07998 * 120.00581 * 29.33053 * 17 16 15 19 19 C 1.39874 * 120.00007 * 209.33037 * 17 16 15 20 20 N 1.30906 * 119.99741 * 10.61738 * 19 17 16 21 21 Si 1.86798 * 120.00167 * 190.61287 * 19 17 16 22 22 H 1.48503 * 109.47202 * 60.00075 * 21 19 17 23 23 H 1.48498 * 109.46982 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47074 * 299.99844 * 21 19 17 25 25 C 1.40885 * 119.69028 * 0.24938 * 16 15 14 26 26 C 1.36341 * 119.83691 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.47357 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47218 * 300.00554 * 1 2 3 29 29 H 1.09008 * 109.47296 * 59.99515 * 1 2 3 30 30 H 1.09006 * 109.47154 * 239.99963 * 2 1 3 31 31 H 1.08998 * 109.47201 * 119.99927 * 2 1 3 32 32 H 1.08995 * 109.47264 * 186.68028 * 8 6 4 33 33 H 1.08999 * 109.46973 * 306.68439 * 8 6 4 34 34 H 1.08990 * 109.47202 * 305.38556 * 9 8 6 35 35 H 1.09003 * 109.47646 * 63.89346 * 10 9 8 36 36 H 1.08998 * 109.47442 * 183.90279 * 10 9 8 37 37 H 1.09008 * 109.47004 * 303.89825 * 10 9 8 38 38 H 1.08996 * 109.47002 * 60.00469 * 11 9 8 39 39 H 1.08999 * 109.46744 * 180.02562 * 11 9 8 40 40 H 1.08997 * 109.47127 * 300.00206 * 11 9 8 41 41 H 0.97005 * 119.99994 * 21.52828 * 12 6 4 42 42 H 1.08001 * 119.91569 * 0.03451 * 14 13 12 43 43 H 1.07999 * 120.08432 * 179.75233 * 15 14 13 44 44 H 0.96997 * 119.99637 * 179.97438 * 20 19 17 45 45 H 1.07997 * 120.08064 * 180.02562 * 25 16 15 46 46 H 1.08000 * 119.92338 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0806 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 1 3.5845 3.4692 0.8911 8 6 3.4497 3.6847 -1.2480 9 6 1.9386 3.9110 -1.1674 10 6 1.6252 4.8507 -0.0014 11 6 1.4464 4.5374 -2.4737 12 7 5.3837 2.8606 0.0010 13 6 6.1356 3.9411 0.4429 14 6 5.4967 5.0538 0.9920 15 6 6.2282 6.1207 1.4226 16 6 7.6333 6.0934 1.3223 17 6 8.3975 7.1916 1.7714 18 1 8.0321 7.8102 2.5778 19 6 9.6282 7.4790 1.1721 20 7 9.9772 6.8680 0.0682 21 14 10.7737 8.7349 1.9467 22 1 11.1365 8.2946 3.3177 23 1 12.0037 8.8568 1.1236 24 1 10.0912 10.0520 2.0141 25 6 8.2718 4.9645 0.7722 26 6 7.5272 3.9072 0.3404 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9584 4.6467 -1.3093 33 1 3.6817 3.0938 -2.1340 34 1 1.4362 2.9567 -1.0101 35 1 2.0703 5.8273 -0.1920 36 1 0.5451 4.9571 0.0994 37 1 2.0370 4.4373 0.9193 38 1 1.6697 3.8679 -3.3043 39 1 0.3700 4.6990 -2.4161 40 1 1.9489 5.4917 -2.6309 41 1 5.8272 2.0550 -0.3076 42 1 4.4198 5.0714 1.0723 43 1 5.7322 6.9827 1.8437 44 1 10.8305 7.0676 -0.3476 45 1 9.3485 4.9367 0.6927 46 1 8.0152 3.0412 -0.0820 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180958512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:08:53 Heat of formation + Delta-G solvation = -93.422257 kcal Electronic energy + Delta-G solvation = -25333.452257 eV Core-core repulsion = 21800.707585 eV Total energy + Delta-G solvation = -3532.744673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.90544 -39.87488 -38.11378 -37.76245 -36.07633 -34.58284 -32.70950 -31.74501 -30.95969 -29.45482 -27.96202 -26.50780 -25.63311 -24.04160 -23.08505 -22.32410 -21.45527 -20.80408 -19.26050 -18.90087 -18.11821 -17.71252 -17.32601 -16.68320 -16.29282 -15.86909 -15.61813 -15.25162 -14.91677 -14.78896 -14.46607 -14.33876 -13.96829 -13.77251 -13.62310 -13.47733 -13.27423 -13.24090 -12.96624 -12.92257 -12.81552 -12.73655 -12.54428 -12.50999 -12.34952 -11.82156 -11.70078 -11.63639 -11.51041 -11.39823 -11.19402 -11.16379 -11.07871 -10.37205 -9.40253 -8.48481 -8.20291 -6.05423 1.00340 1.10511 1.19368 1.41508 1.42612 1.52425 1.59111 2.29171 2.72592 2.88693 3.54685 3.77511 3.89383 3.91030 4.02086 4.07168 4.11435 4.18136 4.36097 4.44418 4.49438 4.54117 4.77153 4.81882 4.89614 4.94176 4.95829 4.97833 5.07835 5.10167 5.13335 5.15335 5.17891 5.28977 5.35758 5.39155 5.40919 5.50612 5.65336 5.70165 5.74372 5.90726 6.19611 6.39637 6.54784 6.65002 6.83229 7.00544 7.10174 7.22646 8.53268 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024115 B = 0.003122 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.835748 B = 8967.893109 C = 9553.884755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.341 6.341 4 C 0.469 3.531 5 O -0.532 6.532 6 C 0.170 3.830 7 H 0.115 0.885 8 C -0.119 4.119 9 C -0.100 4.100 10 C -0.149 4.149 11 C -0.142 4.142 12 N -0.743 5.743 13 C 0.117 3.883 14 C -0.161 4.161 15 C -0.187 4.187 16 C 0.038 3.962 17 C -0.503 4.503 18 H 0.069 0.931 19 C 0.028 3.972 20 N -0.849 5.849 21 Si 0.978 3.022 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.262 1.262 25 C -0.134 4.134 26 C -0.173 4.173 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.396 0.604 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.280 0.720 45 H 0.100 0.900 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.049 -9.084 -2.809 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 O -0.257 6.257 4 C 0.313 3.687 5 O -0.422 6.422 6 C 0.062 3.938 7 H 0.132 0.868 8 C -0.158 4.158 9 C -0.119 4.119 10 C -0.206 4.206 11 C -0.200 4.200 12 N -0.379 5.379 13 C 0.019 3.981 14 C -0.183 4.183 15 C -0.208 4.208 16 C 0.035 3.965 17 C -0.535 4.535 18 H 0.088 0.912 19 C -0.183 4.183 20 N -0.478 5.478 21 Si 0.800 3.200 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.186 1.186 25 C -0.154 4.154 26 C -0.195 4.195 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.232 0.768 42 H 0.140 0.860 43 H 0.119 0.881 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.857 -9.343 -2.948 21.250 hybrid contribution 1.362 0.041 0.069 1.364 sum -17.495 -9.302 -2.879 20.022 Atomic orbital electron populations 1.21821 0.89981 1.04372 1.03970 1.23365 0.97345 0.79312 1.02490 1.86567 1.22477 1.33439 1.83169 1.23873 0.81433 0.92150 0.71278 1.90632 1.61228 1.43675 1.46654 1.20416 0.82125 0.89044 1.02169 0.86782 1.22055 0.97511 1.00604 0.95633 1.21311 0.93223 1.00989 0.96362 1.21903 1.02213 0.99003 0.97487 1.21791 1.01601 1.00398 0.96187 1.43750 1.02335 1.16574 1.75272 1.17321 0.89823 0.89448 1.01545 1.20155 0.98627 0.94158 1.05344 1.20821 0.93465 0.98801 1.07667 1.17830 0.92076 0.92899 0.93689 1.19580 1.03782 1.12235 1.17879 0.91243 1.26613 0.99180 0.98489 0.94020 1.69889 1.22023 1.39868 1.16057 0.85311 0.77227 0.78504 0.78928 1.18792 1.19735 1.18619 1.20870 0.98946 0.92814 1.02806 1.20212 0.92405 0.99538 1.07364 0.88319 0.91130 0.90895 0.91312 0.91610 0.91094 0.91852 0.88517 0.93229 0.91058 0.93078 0.92783 0.91176 0.93349 0.76821 0.86023 0.88056 0.90954 0.88179 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 10.29 71.98 0.74 -0.69 16 2 C 0.05 0.80 6.19 71.98 0.45 1.25 16 3 O -0.34 -7.27 7.38 -51.48 -0.38 -7.65 16 4 C 0.47 12.83 7.31 71.23 0.52 13.35 16 5 O -0.53 -17.41 15.54 21.97 0.34 -17.07 16 6 C 0.17 4.84 2.18 44.24 0.10 4.94 16 7 H 0.11 3.19 4.51 -2.39 -0.01 3.17 16 8 C -0.12 -3.03 4.34 30.60 0.13 -2.89 16 9 C -0.10 -1.98 2.75 -10.79 -0.03 -2.01 16 10 C -0.15 -2.87 9.05 71.98 0.65 -2.22 16 11 C -0.14 -2.49 9.19 71.98 0.66 -1.83 16 12 N -0.74 -26.21 5.14 -322.09 -1.66 -27.86 16 13 C 0.12 4.97 6.56 38.67 0.25 5.22 16 14 C -0.16 -6.82 8.72 22.15 0.19 -6.63 16 15 C -0.19 -9.12 9.74 22.48 0.22 -8.90 16 16 C 0.04 2.08 5.55 -21.27 -0.12 1.97 16 17 C -0.50 -28.06 9.04 23.38 0.21 -27.85 16 18 H 0.07 3.73 7.87 -2.91 -0.02 3.70 16 19 C 0.03 1.46 5.25 85.23 0.45 1.91 16 20 N -0.85 -46.76 10.86 21.82 0.24 -46.53 16 21 Si 0.98 40.38 29.57 68.60 2.03 42.41 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 23 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 25 C -0.13 -7.27 8.59 22.48 0.19 -7.08 16 26 C -0.17 -8.24 9.82 22.15 0.22 -8.02 16 27 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.07 1.16 8.13 -2.38 -0.02 1.14 16 31 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 32 H 0.07 2.11 7.68 -2.39 -0.02 2.09 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 1.81 5.24 -2.39 -0.01 1.80 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 1.02 6.28 -2.38 -0.01 1.01 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.40 14.03 7.71 -92.70 -0.71 13.32 16 42 H 0.12 4.32 6.17 -2.91 -0.02 4.30 16 43 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 44 H 0.28 14.17 8.30 -92.71 -0.77 13.41 16 45 H 0.10 5.75 6.25 -2.91 -0.02 5.73 16 46 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -63.30 370.04 5.67 -57.63 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: 0.26 Total: 38.57 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 4.84 Total: -39.50 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.42 Total: -74.39 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -63.30 5.67 -57.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180958512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.787 kcal (2) G-P(sol) polarization free energy of solvation -63.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds