Wall clock time and date at job start Tue Mar 31 2020 09:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47009 * 2 1 4 4 C 1.35898 * 116.99940 * 179.97438 * 3 2 1 5 5 C 1.38747 * 120.05546 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94590 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 359.97438 * 7 6 5 9 9 C 1.38163 * 120.05442 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.02719 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47190 * 144.97674 * 10 9 8 12 12 C 1.53007 * 109.46642 * 264.97496 * 10 9 8 13 13 C 1.53002 * 109.46857 * 184.99849 * 12 10 9 14 14 C 1.53003 * 109.46846 * 65.00016 * 13 12 10 15 15 C 1.52994 * 109.46953 * 184.99680 * 13 12 10 16 16 N 1.46497 * 109.47288 * 24.97038 * 10 9 8 17 17 C 1.34780 * 119.99849 * 155.00060 * 16 10 9 18 18 O 1.21687 * 120.00246 * 0.02562 * 17 16 10 19 19 C 1.46372 * 119.99723 * 179.97438 * 17 16 10 20 20 H 1.08000 * 120.00308 * 0.02562 * 19 17 16 21 21 C 1.40047 * 119.99927 * 180.02562 * 19 17 16 22 22 N 1.30676 * 119.99946 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 120.00289 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46809 * 59.99905 * 23 21 19 25 25 H 1.48497 * 109.47179 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47074 * 299.99943 * 23 21 19 27 27 H 1.08999 * 109.47276 * 299.99925 * 1 2 3 28 28 H 1.08998 * 109.47492 * 59.99955 * 1 2 3 29 29 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47276 * 240.00075 * 2 1 3 31 31 H 1.08995 * 109.46990 * 120.00117 * 2 1 3 32 32 H 1.08000 * 120.03041 * 359.95195 * 5 4 3 33 33 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 34 34 H 1.08004 * 119.94552 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.97523 * 179.97438 * 8 7 6 36 36 H 1.08997 * 109.46899 * 304.99424 * 12 10 9 37 37 H 1.08996 * 109.47126 * 65.00219 * 12 10 9 38 38 H 1.08998 * 109.47486 * 305.00135 * 13 12 10 39 39 H 1.09002 * 109.47380 * 60.00054 * 14 13 12 40 40 H 1.08997 * 109.46950 * 179.97438 * 14 13 12 41 41 H 1.08999 * 109.47087 * 299.99603 * 14 13 12 42 42 H 1.09005 * 109.47332 * 60.00068 * 15 13 12 43 43 H 1.08997 * 109.47019 * 180.02562 * 15 13 12 44 44 H 1.09002 * 109.47395 * 300.00022 * 15 13 12 45 45 H 0.97000 * 120.00058 * 335.00908 * 16 10 9 46 46 H 0.97005 * 119.99983 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0961 1.8879 0.0000 8 6 5.2551 2.9851 -0.0010 9 6 3.8850 2.8066 -0.0010 10 6 2.9687 4.0031 -0.0028 11 1 2.0798 3.7792 -0.5924 12 6 2.5581 4.3330 1.4338 13 6 1.5314 5.4674 1.4230 14 6 0.2508 4.9896 0.7355 15 6 1.2140 5.8816 2.8612 16 7 3.6659 5.1514 -0.5872 17 6 2.9611 6.1500 -1.1551 18 8 1.7456 6.0981 -1.1821 19 6 3.6577 7.2975 -1.7386 20 1 4.7365 7.3438 -1.7143 21 6 2.9254 8.3355 -2.3282 22 7 1.6202 8.2792 -2.3580 23 14 3.8144 9.7997 -3.0735 24 1 4.7131 9.3327 -4.1595 25 1 2.8199 10.7519 -3.6297 26 1 4.6169 10.4780 -2.0242 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7886 -0.5727 0.0009 33 1 6.2280 -0.2459 0.0051 34 1 7.1668 2.0295 0.0005 35 1 5.6692 3.9825 -0.0010 36 1 2.1189 3.4500 1.8980 37 1 3.4360 4.6430 2.0005 38 1 1.9383 6.3207 0.8804 39 1 -0.1563 4.1363 1.2780 40 1 -0.4808 5.7975 0.7282 41 1 0.4769 4.6945 -0.2892 42 1 2.1264 6.2220 3.3510 43 1 0.4823 6.6894 2.8535 44 1 0.8070 5.0283 3.4037 45 1 4.6348 5.1929 -0.5655 46 1 1.1129 8.9983 -2.7661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187594525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:01 Heat of formation + Delta-G solvation = -64.646354 kcal Electronic energy + Delta-G solvation = -26281.722549 eV Core-core repulsion = 22750.225693 eV Total energy + Delta-G solvation = -3531.496856 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.26284 -38.20253 -37.14550 -35.20942 -33.38957 -32.35553 -31.88912 -30.31481 -29.57243 -27.72840 -26.23185 -25.93399 -24.11198 -23.31150 -21.63426 -20.85149 -19.40351 -18.82496 -18.22299 -17.04164 -16.05325 -15.81225 -15.62615 -15.16155 -14.68218 -14.42270 -14.16946 -14.00275 -13.45509 -13.30830 -13.14701 -13.00360 -12.62019 -12.43426 -12.18362 -11.95591 -11.79758 -11.59883 -11.49709 -11.43928 -11.13853 -11.05453 -10.88828 -10.75323 -10.70344 -10.60330 -10.38209 -10.17628 -9.90929 -9.68717 -9.45685 -8.78732 -8.65440 -7.96267 -7.42873 -7.32370 -6.11036 -4.56430 1.47970 1.59958 3.19020 3.24236 3.25624 3.30113 3.91434 4.15534 4.66318 4.79047 4.84083 4.87265 5.02532 5.05800 5.16561 5.20050 5.35508 5.51723 5.59776 5.73871 5.75432 5.77102 5.82548 5.86568 5.94817 6.02798 6.05950 6.19713 6.32898 6.39024 6.45670 6.49632 6.55884 6.62616 6.65407 6.69095 6.82304 6.94171 6.96776 7.12614 7.46458 7.51499 7.56800 7.62142 8.01097 8.21972 8.40565 9.09626 9.62482 10.67305 10.88370 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.004738 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.312152 B = 5908.545610 C = 6798.478577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.305 6.305 4 C 0.134 3.866 5 C -0.211 4.211 6 C -0.093 4.093 7 C -0.156 4.156 8 C -0.077 4.077 9 C -0.104 4.104 10 C 0.198 3.802 11 H 0.094 0.906 12 C -0.107 4.107 13 C -0.094 4.094 14 C -0.125 4.125 15 C -0.143 4.143 16 N -0.762 5.762 17 C 0.556 3.444 18 O -0.563 6.563 19 C -0.547 4.547 20 H 0.063 0.937 21 C 0.091 3.909 22 N -0.766 5.766 23 Si 0.902 3.098 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.269 1.269 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.022 0.978 40 H 0.038 0.962 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.040 0.960 45 H 0.376 0.624 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -14.821 6.385 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.218 6.218 4 C 0.088 3.912 5 C -0.230 4.230 6 C -0.111 4.111 7 C -0.174 4.174 8 C -0.096 4.096 9 C -0.105 4.105 10 C 0.092 3.908 11 H 0.112 0.888 12 C -0.146 4.146 13 C -0.112 4.112 14 C -0.182 4.182 15 C -0.200 4.200 16 N -0.418 5.418 17 C 0.360 3.640 18 O -0.445 6.445 19 C -0.584 4.584 20 H 0.081 0.919 21 C -0.129 4.129 22 N -0.395 5.395 23 Si 0.727 3.273 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.194 1.194 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.041 0.959 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.209 0.791 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.334 -14.620 6.301 16.090 hybrid contribution 1.166 0.419 -0.321 1.280 sum 3.501 -14.201 5.980 15.801 Atomic orbital electron populations 1.21767 0.92805 1.02422 1.03979 1.22732 0.95952 0.82432 1.00867 1.86177 1.18803 1.28502 1.88347 1.18761 0.82402 0.93370 0.96674 1.21137 0.94431 0.97592 1.09812 1.20827 0.94186 0.97130 0.98974 1.21000 0.99635 0.92436 1.04351 1.20867 0.91963 0.99244 0.97495 1.19703 0.94549 0.92820 1.03451 1.19374 0.94026 0.83080 0.94293 0.88836 1.21935 0.98388 0.98158 0.96084 1.21158 0.95985 0.99520 0.94505 1.21701 0.96156 0.98338 1.01970 1.21860 1.00340 1.00103 0.97699 1.46365 1.08560 1.21929 1.64994 1.18100 0.87140 0.81361 0.77362 1.90589 1.13503 1.79199 1.61239 1.20839 0.93551 1.04027 1.39993 0.91863 1.25627 0.94509 0.98406 0.94317 1.70001 1.06005 1.30156 1.33293 0.86525 0.79727 0.81242 0.79761 1.19451 1.20689 1.19423 0.91394 0.91257 0.90733 0.92372 0.92416 0.85909 0.86312 0.86144 0.85180 0.92961 0.93194 0.88367 0.95920 0.94246 0.90141 0.93807 0.93395 0.94086 0.79072 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 37.16 0.38 -1.10 16 2 C 0.06 0.61 5.46 37.16 0.20 0.82 16 3 O -0.30 -4.73 9.27 -19.42 -0.18 -4.91 16 4 C 0.13 2.10 6.66 -39.22 -0.26 1.84 16 5 C -0.21 -2.73 9.04 -39.43 -0.36 -3.09 16 6 C -0.09 -1.12 10.04 -39.60 -0.40 -1.52 16 7 C -0.16 -1.99 10.04 -39.56 -0.40 -2.39 16 8 C -0.08 -1.17 9.23 -39.61 -0.37 -1.53 16 9 C -0.10 -1.78 5.07 -104.47 -0.53 -2.31 16 10 C 0.20 3.96 2.10 -69.08 -0.15 3.82 16 11 H 0.09 2.16 5.47 -51.93 -0.28 1.88 16 12 C -0.11 -2.01 4.34 -26.73 -0.12 -2.13 16 13 C -0.09 -1.94 2.38 -90.62 -0.22 -2.15 16 14 C -0.12 -2.64 8.03 37.16 0.30 -2.34 16 15 C -0.14 -2.51 9.19 37.15 0.34 -2.17 16 16 N -0.76 -16.82 4.94 -56.34 -0.28 -17.10 16 17 C 0.56 15.07 6.30 -12.99 -0.08 14.99 16 18 O -0.56 -16.60 9.97 5.20 0.05 -16.55 16 19 C -0.55 -15.12 9.54 -35.63 -0.34 -15.46 16 20 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 21 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 22 N -0.77 -22.40 11.83 55.55 0.66 -21.74 16 23 Si 0.90 20.13 29.56 -169.99 -5.02 15.10 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 31 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 32 H 0.12 1.28 6.30 -52.49 -0.33 0.95 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.13 1.86 6.07 -52.49 -0.32 1.55 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.10 2.48 5.19 -51.93 -0.27 2.21 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.93 4.75 -51.93 -0.25 1.69 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.38 7.44 6.19 -40.82 -0.25 7.18 16 46 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -31.92 363.08 -8.50 -40.41 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -7.12 Total: 11.64 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.08 Total: -12.32 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.38 Total: -38.84 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.13 Total: -21.46 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.92 -8.50 -40.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187594525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.232 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds