Wall clock time and date at job start Tue Mar 31 2020 09:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.47009 * 2 1 4 4 C 1.35898 * 116.99940 * 179.97438 * 3 2 1 5 5 C 1.38747 * 120.05546 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94590 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 359.97438 * 7 6 5 9 9 C 1.38163 * 120.05442 * 0.02562 * 8 7 6 10 10 C 1.50706 * 120.02719 * 180.02562 * 9 8 7 11 11 H 1.08994 * 109.47190 * 144.97674 * 10 9 8 12 12 C 1.53007 * 109.46642 * 264.97496 * 10 9 8 13 13 C 1.53002 * 109.46857 * 184.99849 * 12 10 9 14 14 C 1.53003 * 109.46846 * 65.00016 * 13 12 10 15 15 C 1.52994 * 109.46953 * 184.99680 * 13 12 10 16 16 N 1.46497 * 109.47288 * 24.97038 * 10 9 8 17 17 C 1.34780 * 119.99849 * 155.00060 * 16 10 9 18 18 O 1.21687 * 120.00246 * 0.02562 * 17 16 10 19 19 C 1.46372 * 119.99723 * 179.97438 * 17 16 10 20 20 H 1.08000 * 120.00308 * 0.02562 * 19 17 16 21 21 C 1.40047 * 119.99927 * 180.02562 * 19 17 16 22 22 N 1.30676 * 119.99946 * 359.97438 * 21 19 17 23 23 Si 1.86804 * 120.00289 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46809 * 59.99905 * 23 21 19 25 25 H 1.48497 * 109.47179 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47074 * 299.99943 * 23 21 19 27 27 H 1.08999 * 109.47276 * 299.99925 * 1 2 3 28 28 H 1.08998 * 109.47492 * 59.99955 * 1 2 3 29 29 H 1.09004 * 109.46901 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47276 * 240.00075 * 2 1 3 31 31 H 1.08995 * 109.46990 * 120.00117 * 2 1 3 32 32 H 1.08000 * 120.03041 * 359.95195 * 5 4 3 33 33 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 34 34 H 1.08004 * 119.94552 * 179.97438 * 7 6 5 35 35 H 1.08001 * 119.97523 * 179.97438 * 8 7 6 36 36 H 1.08997 * 109.46899 * 304.99424 * 12 10 9 37 37 H 1.08996 * 109.47126 * 65.00219 * 12 10 9 38 38 H 1.08998 * 109.47486 * 305.00135 * 13 12 10 39 39 H 1.09002 * 109.47380 * 60.00054 * 14 13 12 40 40 H 1.08997 * 109.46950 * 179.97438 * 14 13 12 41 41 H 1.08999 * 109.47087 * 299.99603 * 14 13 12 42 42 H 1.09005 * 109.47332 * 60.00068 * 15 13 12 43 43 H 1.08997 * 109.47019 * 180.02562 * 15 13 12 44 44 H 1.09002 * 109.47395 * 300.00022 * 15 13 12 45 45 H 0.97000 * 120.00058 * 335.00908 * 16 10 9 46 46 H 0.97005 * 119.99983 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4259 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0961 1.8879 0.0000 8 6 5.2551 2.9851 -0.0010 9 6 3.8850 2.8066 -0.0010 10 6 2.9687 4.0031 -0.0028 11 1 2.0798 3.7792 -0.5924 12 6 2.5581 4.3330 1.4338 13 6 1.5314 5.4674 1.4230 14 6 0.2508 4.9896 0.7355 15 6 1.2140 5.8816 2.8612 16 7 3.6659 5.1514 -0.5872 17 6 2.9611 6.1500 -1.1551 18 8 1.7456 6.0981 -1.1821 19 6 3.6577 7.2975 -1.7386 20 1 4.7365 7.3438 -1.7143 21 6 2.9254 8.3355 -2.3282 22 7 1.6202 8.2792 -2.3580 23 14 3.8144 9.7997 -3.0735 24 1 4.7131 9.3327 -4.1595 25 1 2.8199 10.7519 -3.6297 26 1 4.6169 10.4780 -2.0242 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7886 -0.5727 0.0009 33 1 6.2280 -0.2459 0.0051 34 1 7.1668 2.0295 0.0005 35 1 5.6692 3.9825 -0.0010 36 1 2.1189 3.4500 1.8980 37 1 3.4360 4.6430 2.0005 38 1 1.9383 6.3207 0.8804 39 1 -0.1563 4.1363 1.2780 40 1 -0.4808 5.7975 0.7282 41 1 0.4769 4.6945 -0.2892 42 1 2.1264 6.2220 3.3510 43 1 0.4823 6.6894 2.8535 44 1 0.8070 5.0283 3.4037 45 1 4.6348 5.1929 -0.5655 46 1 1.1129 8.9983 -2.7661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187594525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:20:57 Heat of formation + Delta-G solvation = -83.982015 kcal Electronic energy + Delta-G solvation = -26282.561006 eV Core-core repulsion = 22750.225693 eV Total energy + Delta-G solvation = -3532.335313 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.42410 -39.83010 -38.35163 -37.00281 -35.02991 -34.41182 -32.87304 -31.73297 -30.68737 -29.19295 -27.96888 -27.85640 -25.14602 -24.65187 -22.66749 -22.31447 -21.10931 -20.52614 -19.55037 -18.65569 -17.48178 -17.02816 -16.98818 -16.65406 -16.30261 -15.88593 -15.68959 -15.34459 -14.91675 -14.70017 -14.32551 -14.23044 -14.16454 -13.83607 -13.38885 -13.35682 -13.19689 -13.04913 -12.91528 -12.78119 -12.68512 -12.58430 -12.48644 -12.46759 -12.14103 -12.01677 -11.82528 -11.61287 -11.52291 -11.30007 -11.13140 -10.82090 -9.79811 -9.54598 -9.27364 -8.99387 -8.18375 -6.74049 0.40113 0.53892 1.40613 1.43693 1.53871 2.27702 2.34563 2.59453 2.84208 3.20972 3.70157 3.79413 3.92870 4.07081 4.07653 4.18096 4.23340 4.23668 4.27996 4.37830 4.46014 4.53192 4.59121 4.69904 4.78644 4.85815 4.89687 4.93216 4.93504 4.94627 5.02668 5.09954 5.15174 5.22377 5.25315 5.38004 5.42381 5.48438 5.52666 5.63244 5.71987 5.85703 5.93411 6.00593 6.32787 6.45202 6.56180 6.96823 7.68462 8.62394 8.82292 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013788 B = 0.004738 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.312152 B = 5908.545610 C = 6798.478577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.335 6.335 4 C 0.119 3.881 5 C -0.208 4.208 6 C -0.083 4.083 7 C -0.154 4.154 8 C -0.089 4.089 9 C -0.137 4.137 10 C 0.207 3.793 11 H 0.053 0.947 12 C -0.094 4.094 13 C -0.093 4.093 14 C -0.112 4.112 15 C -0.135 4.135 16 N -0.752 5.752 17 C 0.544 3.456 18 O -0.595 6.595 19 C -0.577 4.577 20 H 0.077 0.923 21 C 0.036 3.964 22 N -0.816 5.816 23 Si 0.987 3.013 24 H -0.259 1.259 25 H -0.276 1.276 26 H -0.257 1.257 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.022 0.978 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.387 0.613 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 -16.747 7.295 19.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.250 6.250 4 C 0.073 3.927 5 C -0.227 4.227 6 C -0.101 4.101 7 C -0.172 4.172 8 C -0.107 4.107 9 C -0.138 4.138 10 C 0.101 3.899 11 H 0.071 0.929 12 C -0.133 4.133 13 C -0.112 4.112 14 C -0.169 4.169 15 C -0.192 4.192 16 N -0.407 5.407 17 C 0.347 3.653 18 O -0.480 6.480 19 C -0.614 4.614 20 H 0.095 0.905 21 C -0.179 4.179 22 N -0.446 5.446 23 Si 0.807 3.193 24 H -0.183 1.183 25 H -0.201 1.201 26 H -0.182 1.182 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.124 0.876 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.169 0.831 33 H 0.175 0.825 34 H 0.167 0.833 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.222 0.778 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.743 -16.584 7.230 18.702 hybrid contribution 0.425 0.861 -0.592 1.128 sum 5.168 -15.723 6.638 17.832 Atomic orbital electron populations 1.21810 0.92274 1.04056 1.02664 1.23043 0.96460 0.80890 1.02368 1.86154 1.19100 1.31230 1.88483 1.18940 0.82950 0.93622 0.97165 1.21478 0.94701 0.97930 1.08562 1.21318 0.94271 0.98038 0.96433 1.21336 1.00791 0.92010 1.03103 1.20957 0.91451 1.00248 0.98054 1.19536 0.94960 0.92236 1.07089 1.19195 0.93266 0.83568 0.93827 0.92919 1.21799 0.98053 0.97752 0.95690 1.21046 0.95859 0.98395 0.95867 1.21532 0.96337 0.98584 1.00462 1.21774 1.00949 1.00941 0.95575 1.46083 1.09004 1.21637 1.64022 1.18355 0.87029 0.82385 0.77539 1.90567 1.14920 1.80084 1.62410 1.21355 0.94469 1.04910 1.40696 0.90465 1.26743 0.95206 1.01667 0.94267 1.70172 1.08165 1.31603 1.34657 0.85236 0.78356 0.76664 0.79031 1.18276 1.20134 1.18154 0.92194 0.93077 0.87571 0.91197 0.90317 0.83130 0.82497 0.83297 0.85427 0.91645 0.92375 0.93282 0.93262 0.95830 0.93630 0.92691 0.93785 0.91653 0.77787 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 10.28 71.98 0.74 -2.08 16 2 C 0.05 0.97 5.46 71.98 0.39 1.36 16 3 O -0.34 -10.45 9.27 -92.40 -0.86 -11.31 16 4 C 0.12 3.65 6.66 22.50 0.15 3.80 16 5 C -0.21 -4.77 9.04 22.36 0.20 -4.57 16 6 C -0.08 -1.65 10.04 22.25 0.22 -1.43 16 7 C -0.15 -3.47 10.04 22.28 0.22 -3.24 16 8 C -0.09 -2.60 9.23 22.25 0.21 -2.39 16 9 C -0.14 -4.72 5.07 -19.77 -0.10 -4.82 16 10 C 0.21 8.67 2.10 44.25 0.09 8.76 16 11 H 0.05 2.64 5.47 -2.39 -0.01 2.63 16 12 C -0.09 -3.64 4.34 30.60 0.13 -3.50 16 13 C -0.09 -4.02 2.38 -10.79 -0.03 -4.05 16 14 C -0.11 -5.03 8.03 71.98 0.58 -4.45 16 15 C -0.14 -4.72 9.19 71.98 0.66 -4.06 16 16 N -0.75 -34.85 4.94 -450.39 -2.23 -37.07 16 17 C 0.54 31.16 6.30 86.36 0.54 31.70 16 18 O -0.59 -37.67 9.97 -4.31 -0.04 -37.71 16 19 C -0.58 -33.01 9.54 24.83 0.24 -32.78 16 20 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 21 C 0.04 2.04 5.50 85.30 0.47 2.51 16 22 N -0.82 -49.98 11.83 21.84 0.26 -49.72 16 23 Si 0.99 41.94 29.56 68.60 2.03 43.97 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.28 -11.39 7.11 99.48 0.71 -10.69 16 26 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.25 7.66 -2.39 -0.02 1.24 16 31 H 0.08 1.28 7.66 -2.39 -0.02 1.26 16 32 H 0.15 2.53 6.30 -2.91 -0.02 2.51 16 33 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.13 3.63 6.07 -2.91 -0.02 3.61 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 2.63 5.19 -2.39 -0.01 2.62 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.04 2.37 4.75 -2.39 -0.01 2.36 16 42 H 0.05 1.77 8.14 -2.38 -0.02 1.76 16 43 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.39 15.88 6.19 -92.71 -0.57 15.30 16 46 H 0.27 15.21 8.29 -92.70 -0.77 14.44 16 Total: -1.00 -75.03 363.08 4.29 -70.74 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: 0.40 Total: 40.34 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 4.73 Total: -19.23 kcal Atomic # 7 Polarization: -84.83 SS G_CDS: -1.97 Total: -86.79 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -0.90 Total: -49.02 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -75.03 4.29 -70.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187594525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.244 kcal (2) G-P(sol) polarization free energy of solvation -75.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds