Wall clock time and date at job start Tue Mar 31 2020 09:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.47217 * 2 1 4 4 C 1.34771 * 120.00243 * 99.09612 * 3 2 1 5 5 O 1.21585 * 120.00381 * 182.55326 * 4 3 2 6 6 C 1.47536 * 119.99902 * 2.55094 * 4 3 2 7 7 C 1.39664 * 120.19924 * 330.72921 * 6 4 3 8 8 C 1.37834 * 119.92111 * 179.97438 * 7 6 4 9 9 C 1.38576 * 120.32090 * 359.97438 * 8 7 6 10 10 C 1.38019 * 120.40406 * 0.02562 * 9 8 7 11 11 C 1.38832 * 120.07114 * 359.97438 * 10 9 8 12 12 O 1.35520 * 120.16165 * 180.02562 * 11 10 9 13 13 C 1.34813 * 117.00048 * 5.81935 * 12 11 10 14 14 H 1.08003 * 120.00006 * 4.69682 * 13 12 11 15 15 C 1.38701 * 120.00272 * 184.68916 * 13 12 11 16 16 N 1.31521 * 119.99958 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47194 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46917 * 120.00351 * 17 15 13 20 20 H 1.48495 * 109.46956 * 240.00156 * 17 15 13 21 21 C 1.46502 * 119.99668 * 279.09756 * 3 2 1 22 22 H 1.08998 * 109.46964 * 179.97438 * 21 3 2 23 23 C 1.52999 * 109.47099 * 299.99691 * 21 3 2 24 24 C 1.53001 * 109.47126 * 60.00309 * 21 3 2 25 25 C 1.52991 * 109.47428 * 59.99708 * 24 21 3 26 26 C 1.52998 * 109.47000 * 179.97438 * 24 21 3 27 27 H 1.09005 * 109.47242 * 300.00242 * 1 2 3 28 28 H 1.09000 * 109.47448 * 59.99740 * 1 2 3 29 29 H 1.09001 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46843 * 239.99874 * 2 1 3 31 31 H 1.09006 * 109.46901 * 119.99840 * 2 1 3 32 32 H 1.07997 * 120.04114 * 359.97438 * 7 6 4 33 33 H 1.07999 * 119.83517 * 180.02562 * 8 7 6 34 34 H 1.07998 * 119.79235 * 180.27859 * 9 8 7 35 35 H 1.07994 * 119.96418 * 180.02562 * 10 9 8 36 36 H 0.96998 * 119.99751 * 179.97438 * 16 15 13 37 37 H 1.09008 * 109.46519 * 60.00504 * 23 21 3 38 38 H 1.09003 * 109.46857 * 179.97438 * 23 21 3 39 39 H 1.08998 * 109.47505 * 300.00537 * 23 21 3 40 40 H 1.08998 * 109.46894 * 299.99669 * 24 21 3 41 41 H 1.08998 * 109.47297 * 179.97438 * 25 24 21 42 42 H 1.09007 * 109.47195 * 300.00011 * 25 24 21 43 43 H 1.08998 * 109.47114 * 60.00097 * 25 24 21 44 44 H 1.09005 * 109.47305 * 59.99854 * 26 24 21 45 45 H 1.09006 * 109.47373 * 179.97438 * 26 24 21 46 46 H 1.08998 * 109.47192 * 300.00240 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.4170 1.9551 1.1524 5 8 2.7784 3.1160 1.1604 6 6 2.4147 1.1747 2.4045 7 6 1.4986 0.1357 2.5830 8 6 1.5020 -0.5901 3.7548 9 6 2.4110 -0.2946 4.7582 10 6 3.3221 0.7293 4.5959 11 6 3.3334 1.4710 3.4223 12 8 4.2277 2.4764 3.2607 13 6 5.1579 2.6288 4.2245 14 1 5.2146 1.9199 5.0373 15 6 6.0422 3.6961 4.1723 16 7 5.9729 4.5597 3.1828 17 14 7.3306 3.9077 5.5082 18 1 7.1993 2.8110 6.5008 19 1 8.6850 3.8654 4.9007 20 1 7.1322 5.2147 6.1847 21 6 2.0734 2.1387 -1.2528 22 1 2.4599 3.1387 -1.0561 23 6 2.9936 1.4213 -2.2425 24 6 0.6676 2.2437 -1.8474 25 6 -0.2525 2.9611 -0.8578 26 6 0.7250 3.0353 -3.1555 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 0.7885 -0.0988 1.8039 33 1 0.7932 -1.3935 3.8913 34 1 2.4090 -0.8716 5.6710 35 1 4.0276 0.9532 5.3822 36 1 6.5911 5.3063 3.1465 37 1 2.6066 0.4214 -2.4391 38 1 3.0341 1.9846 -3.1748 39 1 3.9951 1.3464 -1.8188 40 1 0.2807 1.2438 -2.0441 41 1 -1.2539 3.0363 -1.2816 42 1 -0.2935 2.3975 0.0744 43 1 0.1344 3.9609 -0.6612 44 1 1.3806 2.5245 -3.8608 45 1 -0.2765 3.1097 -3.5794 46 1 1.1118 4.0351 -2.9585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194983182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:01:52 Heat of formation + Delta-G solvation = -30.018496 kcal Electronic energy + Delta-G solvation = -26574.237267 eV Core-core repulsion = 23044.241988 eV Total energy + Delta-G solvation = -3529.995279 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.80338 -40.30845 -38.22127 -38.15495 -35.60490 -34.34738 -32.71311 -31.62109 -30.69109 -30.12514 -27.96205 -27.38690 -25.21084 -24.52202 -23.58603 -23.05691 -21.14794 -20.41706 -19.87954 -18.71313 -18.08390 -17.37324 -16.54616 -16.42186 -16.14772 -15.85912 -15.62108 -15.42953 -15.30111 -14.87381 -14.68922 -14.34746 -14.23907 -13.89613 -13.65734 -13.47831 -13.43860 -13.15939 -13.08375 -12.88407 -12.76454 -12.60717 -12.51245 -12.29232 -12.13701 -12.10607 -11.84230 -11.72987 -11.63256 -11.41327 -11.15949 -10.86041 -10.52611 -9.74751 -9.53524 -9.02612 -8.47692 -6.18774 0.17258 0.70277 1.29971 1.40894 1.50339 2.00163 2.13630 2.15328 2.83154 3.17663 3.42646 3.61886 3.89462 3.94401 4.01711 4.11410 4.17813 4.25474 4.36323 4.42017 4.47145 4.49571 4.56230 4.60717 4.66723 4.75872 4.84226 4.91015 4.93508 4.96382 5.00573 5.04684 5.06251 5.11220 5.13774 5.15994 5.29074 5.33020 5.45418 5.49373 5.59555 5.61265 5.69490 5.83748 5.94550 6.17497 6.54446 6.92269 7.44796 7.78015 8.73954 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015193 B = 0.004951 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.487517 B = 5653.987231 C = 7000.471528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.070 3.930 3 N -0.598 5.598 4 C 0.552 3.448 5 O -0.580 6.580 6 C -0.240 4.240 7 C -0.063 4.063 8 C -0.201 4.201 9 C -0.043 4.043 10 C -0.257 4.257 11 C 0.146 3.854 12 O -0.201 6.201 13 C -0.424 4.424 14 H 0.106 0.894 15 C -0.024 4.024 16 N -0.911 5.911 17 Si 1.024 2.976 18 H -0.245 1.245 19 H -0.268 1.268 20 H -0.269 1.269 21 C 0.134 3.866 22 H 0.048 0.952 23 C -0.155 4.155 24 C -0.097 4.097 25 C -0.148 4.148 26 C -0.145 4.145 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.166 0.834 34 H 0.154 0.846 35 H 0.122 0.878 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.029 0.971 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.048 0.952 43 H 0.021 0.979 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 -14.205 -8.466 21.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.051 4.051 3 N -0.331 5.331 4 C 0.344 3.656 5 O -0.460 6.460 6 C -0.245 4.245 7 C -0.080 4.080 8 C -0.219 4.219 9 C -0.061 4.061 10 C -0.276 4.276 11 C 0.092 3.908 12 O -0.104 6.104 13 C -0.500 4.500 14 H 0.124 0.876 15 C -0.223 4.223 16 N -0.547 5.547 17 Si 0.842 3.158 18 H -0.168 1.168 19 H -0.193 1.193 20 H -0.194 1.194 21 C 0.031 3.969 22 H 0.067 0.933 23 C -0.213 4.213 24 C -0.115 4.115 25 C -0.205 4.205 26 C -0.203 4.203 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.202 0.798 33 H 0.184 0.816 34 H 0.171 0.829 35 H 0.139 0.861 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.067 0.933 43 H 0.040 0.960 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.773 -13.228 -8.737 20.359 hybrid contribution 1.214 1.098 0.835 1.837 sum -11.559 -12.130 -7.902 18.526 Atomic orbital electron populations 1.22748 0.94013 1.04662 1.03292 1.22490 0.95945 0.81447 1.05227 1.47847 1.64399 1.14929 1.05899 1.18594 0.76290 0.86060 0.84705 1.90826 1.48921 1.19547 1.86698 1.19270 1.04996 1.05158 0.95076 1.22416 0.95803 0.90628 0.99182 1.21246 1.02823 1.04097 0.93748 1.21437 0.91735 0.93379 0.99557 1.21276 1.06056 1.02260 0.98044 1.20067 0.89042 0.87954 0.93762 1.84119 1.36949 1.43918 1.45421 1.22040 1.09789 1.12857 1.05328 0.87649 1.26785 1.00777 0.93932 1.00780 1.70322 1.37675 1.14097 1.32612 0.84481 0.75848 0.79319 0.76143 1.16777 1.19253 1.19395 1.21160 0.97189 0.95236 0.83294 0.93349 1.22148 0.97986 1.02210 0.98928 1.21624 0.92930 1.01563 0.95427 1.21907 0.99863 0.99205 0.99527 1.21887 1.03096 0.99346 0.95945 0.92721 0.89594 0.87938 0.88455 0.88434 0.79782 0.81650 0.82861 0.86069 0.92032 0.89468 0.89491 0.95149 0.87315 0.90410 0.93266 0.95962 0.90759 0.90590 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 7.46 71.98 0.54 -2.49 16 2 C 0.07 1.58 5.25 86.38 0.45 2.04 16 3 N -0.60 -20.34 1.76 -801.56 -1.41 -21.75 16 4 C 0.55 26.46 7.38 86.70 0.64 27.10 16 5 O -0.58 -35.56 15.06 14.47 0.22 -35.34 16 6 C -0.24 -10.96 5.54 -19.99 -0.11 -11.07 16 7 C -0.06 -2.02 7.43 22.52 0.17 -1.85 16 8 C -0.20 -5.56 10.03 22.25 0.22 -5.34 16 9 C -0.04 -1.38 10.03 22.30 0.22 -1.16 16 10 C -0.26 -11.39 9.13 22.36 0.20 -11.18 16 11 C 0.15 7.82 6.63 22.91 0.15 7.97 16 12 O -0.20 -13.18 8.24 -1.59 -0.01 -13.20 16 13 C -0.42 -26.33 9.45 67.93 0.64 -25.69 16 14 H 0.11 5.89 5.29 -2.91 -0.02 5.87 16 15 C -0.02 -1.47 5.49 84.85 0.47 -1.01 16 16 N -0.91 -60.95 13.67 21.62 0.30 -60.65 16 17 Si 1.02 45.23 29.55 68.60 2.03 47.26 16 18 H -0.24 -9.76 7.11 99.48 0.71 -9.05 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 C 0.13 4.16 2.23 44.99 0.10 4.26 16 22 H 0.05 2.01 6.90 -2.39 -0.02 2.00 16 23 C -0.16 -3.85 8.79 71.98 0.63 -3.21 16 24 C -0.10 -2.13 1.91 -10.80 -0.02 -2.15 16 25 C -0.15 -3.81 8.28 71.98 0.60 -3.21 16 26 C -0.15 -2.69 8.84 71.98 0.64 -2.05 16 27 H 0.05 1.05 6.12 -2.38 -0.01 1.04 16 28 H 0.09 1.26 4.01 -2.39 -0.01 1.25 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.10 1.70 6.50 -2.39 -0.02 1.68 16 31 H 0.10 2.39 4.32 -2.38 -0.01 2.38 16 32 H 0.19 4.40 2.35 -2.91 -0.01 4.40 16 33 H 0.17 2.93 8.06 -2.91 -0.02 2.90 16 34 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 35 H 0.12 5.46 5.71 -2.91 -0.02 5.44 16 36 H 0.27 16.53 8.31 -92.71 -0.77 15.76 16 37 H 0.09 1.59 6.74 -2.38 -0.02 1.58 16 38 H 0.09 1.79 6.43 -2.39 -0.02 1.77 16 39 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 1.77 5.45 -2.39 -0.01 1.76 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.38 5.48 -2.38 -0.01 1.37 16 43 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 1.14 6.43 -2.38 -0.02 1.12 16 45 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -90.93 348.46 7.66 -83.27 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 1.01 Total: 29.46 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 5.54 Total: -29.04 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -1.12 Total: -82.40 kcal Atomic # 8 Polarization: -48.75 SS G_CDS: 0.20 Total: -48.54 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -90.93 7.66 -83.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194983182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.251 kcal (2) G-P(sol) polarization free energy of solvation -90.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds