Wall clock time and date at job start Tue Mar 31 2020 10:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 O 1.42906 * 109.46592 * 134.99809 * 3 2 1 5 5 C 1.36000 * 116.99645 * 179.97438 * 4 3 2 6 6 C 1.38562 * 120.07208 * 0.02562 * 5 4 3 7 7 C 1.38243 * 119.99449 * 179.70115 * 6 5 4 8 8 C 1.38249 * 120.15069 * 0.54964 * 7 6 5 9 9 C 1.50697 * 119.93047 * 179.72429 * 8 7 6 10 10 N 1.46905 * 109.47066 * 269.72765 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46700 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46820 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00019 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00228 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46757 * 60.00769 * 18 16 14 20 20 H 1.48495 * 109.46824 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47105 * 300.00477 * 18 16 14 22 22 C 1.38245 * 120.14072 * 359.44956 * 8 7 6 23 23 C 1.38562 * 120.00279 * 0.27376 * 22 8 7 24 24 O 1.35992 * 120.07338 * 179.97438 * 23 22 8 25 25 C 1.42896 * 116.99962 * 0.02562 * 24 23 22 26 26 H 1.07997 * 120.00091 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99482 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99482 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47356 * 15.00454 * 3 2 1 30 30 H 1.08997 * 109.46833 * 254.99764 * 3 2 1 31 31 H 1.07996 * 120.00196 * 0.02562 * 6 5 4 32 32 H 1.08008 * 119.92555 * 180.29190 * 7 6 5 33 33 H 1.09001 * 109.47558 * 149.72929 * 9 8 7 34 34 H 1.08998 * 109.47216 * 29.72591 * 9 8 7 35 35 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 36 36 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 37 37 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 38 38 H 1.08995 * 109.46615 * 299.99641 * 12 11 10 39 39 H 1.08996 * 109.46939 * 60.00272 * 12 11 10 40 40 H 1.08993 * 109.47740 * 299.99810 * 13 12 11 41 41 H 1.09005 * 109.47573 * 59.99976 * 13 12 11 42 42 H 0.97002 * 120.00555 * 179.97438 * 17 16 14 43 43 H 1.08003 * 119.99470 * 180.24858 * 22 8 7 44 44 H 1.09003 * 109.47424 * 60.00353 * 25 24 23 45 45 H 1.09010 * 109.47350 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47519 * 299.99677 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9528 5 6 3.9103 2.3457 1.0784 6 6 3.6608 3.4660 0.3022 7 6 4.4544 4.5900 0.4356 8 6 5.5049 4.5956 1.3344 9 6 6.3707 5.8213 1.4714 10 7 7.5002 5.7300 0.5365 11 6 8.3683 6.9103 0.6427 12 6 9.5301 6.7793 -0.3443 13 6 10.4338 8.0089 -0.2341 14 6 11.5785 7.8797 -1.2057 15 1 11.6536 7.0079 -1.8388 16 6 12.5293 8.8749 -1.2872 17 7 12.4376 9.9367 -0.5167 18 14 13.9478 8.7150 -2.4921 19 1 13.4142 8.6147 -3.8744 20 1 14.8250 9.9084 -2.3851 21 1 14.7320 7.4946 -2.1744 22 6 5.7592 3.4811 2.1119 23 6 4.9640 2.3532 1.9872 24 8 5.2132 1.2559 2.7509 25 6 6.3111 1.3354 3.6621 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3856 2.1161 0.2660 30 1 2.4755 1.4867 -0.9926 31 1 2.8431 3.4629 -0.4033 32 1 4.2560 5.4643 -0.1667 33 1 6.7482 5.8875 2.4918 34 1 5.7816 6.7096 1.2436 35 1 7.1763 5.6030 -0.4106 36 1 7.7932 7.8064 0.4094 37 1 8.7595 6.9834 1.6574 38 1 10.1052 5.8832 -0.1114 39 1 9.1385 6.7065 -1.3588 40 1 9.8585 8.9048 -0.4671 41 1 10.8255 8.0824 0.7805 42 1 13.1067 10.6367 -0.5737 43 1 6.5780 3.4895 2.8162 44 1 6.1407 2.1498 4.3663 45 1 6.3991 0.3960 4.2080 46 1 7.2309 1.5212 3.1074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000237139652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:43 Heat of formation + Delta-G solvation = -41.564577 kcal Electronic energy + Delta-G solvation = -23552.362676 eV Core-core repulsion = 20021.866721 eV Total energy + Delta-G solvation = -3530.495955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.76647 -38.78802 -37.78415 -35.98810 -34.47388 -33.48900 -31.71933 -30.46916 -29.98859 -27.69858 -27.04664 -26.23163 -24.35206 -22.53168 -22.21342 -21.37088 -20.34896 -20.06877 -18.61006 -17.31137 -16.97872 -16.43636 -16.28559 -15.74371 -15.51689 -15.24757 -14.78009 -14.63293 -14.54727 -14.21186 -14.12950 -13.59855 -13.45443 -13.00836 -12.75455 -12.62897 -12.26435 -11.85705 -11.81204 -11.63211 -11.51685 -11.38122 -11.23375 -11.14366 -11.06235 -10.80334 -10.56310 -10.51057 -9.93697 -9.68123 -9.34144 -9.06450 -8.84536 -8.32617 -8.22364 -7.89586 -5.97877 -3.99960 1.12749 1.25652 1.63498 3.07123 3.11264 3.35014 3.38984 3.41881 3.51418 4.36444 4.45314 4.53980 4.57063 4.65031 4.74256 4.79719 4.92463 4.96166 5.01841 5.04046 5.12310 5.24909 5.35016 5.36446 5.37763 5.40889 5.54116 5.65218 5.81201 5.90844 5.98819 6.06004 6.08601 6.16166 6.32310 6.46171 6.52280 6.72676 6.76491 6.86667 7.14905 7.31755 7.40262 7.61555 7.70101 7.85192 8.02424 8.45815 9.06978 9.63851 11.13456 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.002001 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.869602 B =13991.464859 C =14380.044801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.085 3.915 4 O -0.302 6.302 5 C 0.096 3.904 6 C -0.173 4.173 7 C -0.111 4.111 8 C -0.072 4.072 9 C 0.098 3.902 10 N -0.686 5.686 11 C 0.059 3.941 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.149 4.149 23 C 0.098 3.902 24 O -0.309 6.309 25 C 0.025 3.975 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.078 0.922 34 H 0.038 0.962 35 H 0.339 0.661 36 H 0.025 0.975 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.138 0.862 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.680 -17.466 5.423 29.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.010 3.990 4 O -0.217 6.217 5 C 0.051 3.949 6 C -0.192 4.192 7 C -0.130 4.130 8 C -0.073 4.073 9 C -0.031 4.031 10 N -0.317 5.317 11 C -0.070 4.070 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.168 4.168 23 C 0.053 3.947 24 O -0.223 6.223 25 C -0.070 4.070 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.157 0.843 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.070 0.930 43 H 0.155 0.845 44 H 0.073 0.927 45 H 0.117 0.883 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.284 -18.029 6.012 30.056 hybrid contribution 0.409 0.991 -1.177 1.592 sum -22.876 -17.038 4.835 28.930 Atomic orbital electron populations 1.23873 0.95408 1.02531 0.99339 1.22677 0.95623 0.97889 1.00832 1.21818 0.88037 0.96734 0.92395 1.86176 1.41946 1.35082 1.58456 1.18175 0.92259 0.87538 0.96968 1.20987 1.02961 0.93169 1.02071 1.20774 0.95386 0.97986 0.98843 1.19568 0.95796 0.95587 0.96303 1.20848 0.90812 0.92946 0.98462 1.60608 1.18863 1.42176 1.10067 1.22158 0.94391 0.89202 1.01222 1.21624 0.95156 1.01269 0.96446 1.19065 0.93570 0.91748 0.97184 1.21226 1.08671 1.04790 1.21096 0.92720 1.25031 0.98115 0.95372 0.95999 1.69955 1.35595 1.08848 1.39208 0.86652 0.82271 0.77410 0.81627 1.20280 1.21316 1.20234 1.20970 1.00496 0.92236 1.03082 1.18221 0.94913 0.87788 0.93809 1.86147 1.50033 1.34945 1.51129 1.23082 0.88405 1.03467 0.92013 0.87467 0.88266 0.86222 0.91607 0.91044 0.84971 0.85683 0.90340 0.94423 0.84341 0.95680 0.91414 0.92547 0.93649 0.96795 0.96568 0.93002 0.84472 0.92715 0.88325 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 14.31 29.01 0.42 -0.55 16 2 C -0.15 -1.09 9.89 -36.03 -0.36 -1.45 16 3 C 0.09 0.69 5.16 36.01 0.19 0.88 16 4 O -0.30 -3.59 9.91 -34.24 -0.34 -3.93 16 5 C 0.10 1.17 6.70 -39.12 -0.26 0.91 16 6 C -0.17 -1.79 9.04 -39.46 -0.36 -2.15 16 7 C -0.11 -1.19 9.69 -39.58 -0.38 -1.57 16 8 C -0.07 -0.85 5.39 -104.62 -0.56 -1.41 16 9 C 0.10 1.21 5.81 -4.97 -0.03 1.18 16 10 N -0.69 -10.09 6.49 -115.05 -0.75 -10.84 16 11 C 0.06 1.01 5.69 -3.82 -0.02 0.99 16 12 C -0.11 -2.24 5.41 -26.73 -0.14 -2.38 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.15 -1.77 8.69 -39.46 -0.34 -2.11 16 23 C 0.10 1.24 6.70 -39.12 -0.26 0.98 16 24 O -0.31 -3.83 10.28 -34.22 -0.35 -4.18 16 25 C 0.03 0.22 9.81 101.05 0.99 1.21 16 26 H 0.11 0.45 8.06 -52.49 -0.42 0.03 16 27 H 0.10 0.46 7.90 -52.49 -0.41 0.04 16 28 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.07 0.45 7.38 -51.93 -0.38 0.07 16 30 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 31 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 33 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.34 4.79 8.72 -39.29 -0.34 4.44 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 43 H 0.14 1.47 6.30 -52.48 -0.33 1.14 16 44 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 45 H 0.10 0.63 8.14 -51.92 -0.42 0.20 16 46 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -32.62 385.62 -9.20 -41.81 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -7.60 Total: -0.32 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -1.68 Total: -18.79 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.01 Total: -37.28 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.69 Total: -8.11 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.62 -9.20 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237139652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.249 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds