Wall clock time and date at job start Tue Mar 31 2020 10:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50700 * 119.99865 * 2 1 4 4 O 1.42906 * 109.46592 * 134.99809 * 3 2 1 5 5 C 1.36000 * 116.99645 * 179.97438 * 4 3 2 6 6 C 1.38562 * 120.07208 * 0.02562 * 5 4 3 7 7 C 1.38243 * 119.99449 * 179.70115 * 6 5 4 8 8 C 1.38249 * 120.15069 * 0.54964 * 7 6 5 9 9 C 1.50697 * 119.93047 * 179.72429 * 8 7 6 10 10 N 1.46905 * 109.47066 * 269.72765 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46700 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46820 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00019 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00228 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46757 * 60.00769 * 18 16 14 20 20 H 1.48495 * 109.46824 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47105 * 300.00477 * 18 16 14 22 22 C 1.38245 * 120.14072 * 359.44956 * 8 7 6 23 23 C 1.38562 * 120.00279 * 0.27376 * 22 8 7 24 24 O 1.35992 * 120.07338 * 179.97438 * 23 22 8 25 25 C 1.42896 * 116.99962 * 0.02562 * 24 23 22 26 26 H 1.07997 * 120.00091 * 180.02562 * 1 2 3 27 27 H 1.07999 * 119.99482 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99482 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47356 * 15.00454 * 3 2 1 30 30 H 1.08997 * 109.46833 * 254.99764 * 3 2 1 31 31 H 1.07996 * 120.00196 * 0.02562 * 6 5 4 32 32 H 1.08008 * 119.92555 * 180.29190 * 7 6 5 33 33 H 1.09001 * 109.47558 * 149.72929 * 9 8 7 34 34 H 1.08998 * 109.47216 * 29.72591 * 9 8 7 35 35 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 36 36 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 37 37 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 38 38 H 1.08995 * 109.46615 * 299.99641 * 12 11 10 39 39 H 1.08996 * 109.46939 * 60.00272 * 12 11 10 40 40 H 1.08993 * 109.47740 * 299.99810 * 13 12 11 41 41 H 1.09005 * 109.47573 * 59.99976 * 13 12 11 42 42 H 0.97002 * 120.00555 * 179.97438 * 17 16 14 43 43 H 1.08003 * 119.99470 * 180.24858 * 22 8 7 44 44 H 1.09003 * 109.47424 * 60.00353 * 25 24 23 45 45 H 1.09010 * 109.47350 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47519 * 299.99677 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9528 5 6 3.9103 2.3457 1.0784 6 6 3.6608 3.4660 0.3022 7 6 4.4544 4.5900 0.4356 8 6 5.5049 4.5956 1.3344 9 6 6.3707 5.8213 1.4714 10 7 7.5002 5.7300 0.5365 11 6 8.3683 6.9103 0.6427 12 6 9.5301 6.7793 -0.3443 13 6 10.4338 8.0089 -0.2341 14 6 11.5785 7.8797 -1.2057 15 1 11.6536 7.0079 -1.8388 16 6 12.5293 8.8749 -1.2872 17 7 12.4376 9.9367 -0.5167 18 14 13.9478 8.7150 -2.4921 19 1 13.4142 8.6147 -3.8744 20 1 14.8250 9.9084 -2.3851 21 1 14.7320 7.4946 -2.1744 22 6 5.7592 3.4811 2.1119 23 6 4.9640 2.3532 1.9872 24 8 5.2132 1.2559 2.7509 25 6 6.3111 1.3354 3.6621 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5399 0.9354 0.0004 28 1 1.8500 -0.9354 -0.0004 29 1 1.3856 2.1161 0.2660 30 1 2.4755 1.4867 -0.9926 31 1 2.8431 3.4629 -0.4033 32 1 4.2560 5.4643 -0.1667 33 1 6.7482 5.8875 2.4918 34 1 5.7816 6.7096 1.2436 35 1 7.1763 5.6030 -0.4106 36 1 7.7932 7.8064 0.4094 37 1 8.7595 6.9834 1.6574 38 1 10.1052 5.8832 -0.1114 39 1 9.1385 6.7065 -1.3588 40 1 9.8585 8.9048 -0.4671 41 1 10.8255 8.0824 0.7805 42 1 13.1067 10.6367 -0.5737 43 1 6.5780 3.4895 2.8162 44 1 6.1407 2.1498 4.3663 45 1 6.3991 0.3960 4.2080 46 1 7.2309 1.5212 3.1074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000237139652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:42 Heat of formation + Delta-G solvation = -60.940540 kcal Electronic energy + Delta-G solvation = -23553.202881 eV Core-core repulsion = 20021.866721 eV Total energy + Delta-G solvation = -3531.336160 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58473 -39.57257 -38.72911 -37.24622 -35.47828 -34.93385 -33.34606 -31.39672 -31.11841 -28.74461 -27.87531 -27.45677 -25.66201 -23.87792 -23.27161 -22.34979 -21.77282 -20.85588 -19.40995 -18.49301 -18.09683 -17.79301 -17.18509 -16.75009 -16.56183 -16.44336 -15.95108 -15.75070 -15.54734 -15.50022 -14.94545 -14.70443 -14.43008 -14.18825 -13.80403 -13.69818 -13.53343 -13.29843 -13.05833 -12.75391 -12.62770 -12.47284 -12.40893 -12.27849 -12.19327 -12.00867 -11.92254 -11.82989 -11.51449 -11.36918 -11.09600 -10.54008 -10.42834 -9.69875 -9.38268 -8.77446 -8.19304 -6.30257 0.27760 0.39302 1.13936 1.40383 1.43501 1.51459 2.36032 2.38608 2.41539 2.63687 3.13565 3.40996 3.72492 3.78700 3.98763 4.02804 4.09495 4.18298 4.24440 4.31603 4.33892 4.39435 4.41371 4.42323 4.54875 4.58228 4.66732 4.73568 4.74705 4.78896 4.96822 4.99891 5.11821 5.13967 5.24952 5.25860 5.52703 5.59789 5.61791 5.64313 5.72128 5.76512 5.86896 6.04532 6.11044 6.28084 6.46807 6.60582 6.86372 7.38748 8.92155 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022308 B = 0.002001 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.869602 B =13991.464859 C =14380.044801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.177 4.177 3 C 0.080 3.920 4 O -0.324 6.324 5 C 0.082 3.918 6 C -0.170 4.170 7 C -0.110 4.110 8 C -0.083 4.083 9 C 0.102 3.898 10 N -0.688 5.688 11 C 0.073 3.927 12 C -0.093 4.093 13 C 0.025 3.975 14 C -0.545 4.545 15 H 0.058 0.942 16 C -0.001 4.001 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.268 1.268 22 C -0.154 4.154 23 C 0.078 3.922 24 O -0.330 6.330 25 C 0.020 3.980 26 H 0.121 0.879 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.344 0.656 36 H 0.027 0.973 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.050 0.950 40 H -0.007 1.007 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.143 0.857 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.650 -18.070 4.483 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.196 4.196 3 C 0.005 3.995 4 O -0.239 6.239 5 C 0.037 3.963 6 C -0.188 4.188 7 C -0.129 4.129 8 C -0.083 4.083 9 C -0.026 4.026 10 N -0.320 5.320 11 C -0.056 4.056 12 C -0.131 4.131 13 C -0.013 4.013 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.173 4.173 23 C 0.033 3.967 24 O -0.245 6.245 25 C -0.075 4.075 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.175 0.825 32 H 0.162 0.838 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.162 0.838 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.160 0.840 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.274 -18.651 5.071 31.029 hybrid contribution 0.619 1.135 -0.853 1.549 sum -23.655 -17.516 4.218 29.735 Atomic orbital electron populations 1.24109 0.94846 1.03785 0.96752 1.22683 0.96262 0.97377 1.03236 1.22050 0.87524 0.97770 0.92106 1.86152 1.42798 1.35331 1.59581 1.18471 0.92391 0.88208 0.97237 1.21261 1.03352 0.92318 1.01871 1.21023 0.94779 0.98694 0.98406 1.19571 0.96394 0.95275 0.97105 1.20836 0.90142 0.93770 0.97839 1.60513 1.19940 1.40608 1.10926 1.21848 0.93640 0.90410 0.99731 1.21375 0.95547 0.98279 0.97892 1.18976 0.93801 0.93286 0.95243 1.21681 1.09766 1.05104 1.21745 0.92341 1.25984 1.01087 0.94901 0.97893 1.70086 1.36730 1.09654 1.40790 0.85506 0.78577 0.77718 0.79273 1.19169 1.20737 1.19293 1.21067 1.00656 0.92221 1.03355 1.18484 0.95623 0.88126 0.94496 1.86112 1.51298 1.35287 1.51764 1.23296 0.87430 1.05005 0.91739 0.86097 0.87091 0.86846 0.90257 0.90261 0.82454 0.83818 0.90201 0.93266 0.83788 0.95448 0.91764 0.93091 0.93161 0.98902 0.98941 0.92781 0.83974 0.91801 0.86362 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 14.31 67.78 0.97 -0.50 16 2 C -0.18 -2.39 9.89 25.64 0.25 -2.13 16 3 C 0.08 1.21 5.16 71.24 0.37 1.58 16 4 O -0.32 -7.60 9.91 -79.68 -0.79 -8.39 16 5 C 0.08 1.96 6.70 22.57 0.15 2.11 16 6 C -0.17 -3.23 9.04 22.35 0.20 -3.02 16 7 C -0.11 -2.15 9.69 22.27 0.22 -1.93 16 8 C -0.08 -1.85 5.39 -19.86 -0.11 -1.95 16 9 C 0.10 2.37 5.81 85.55 0.50 2.87 16 10 N -0.69 -19.33 6.49 -517.92 -3.36 -22.69 16 11 C 0.07 2.45 5.69 86.30 0.49 2.94 16 12 C -0.09 -3.87 5.41 30.59 0.17 -3.71 16 13 C 0.02 1.31 4.97 29.85 0.15 1.46 16 14 C -0.54 -31.56 9.11 25.60 0.23 -31.33 16 15 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 17 N -0.93 -57.15 13.29 21.45 0.28 -56.87 16 18 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 C -0.15 -3.58 8.69 22.35 0.19 -3.39 16 23 C 0.08 1.97 6.70 22.57 0.15 2.12 16 24 O -0.33 -8.26 10.28 -79.60 -0.82 -9.07 16 25 C 0.02 0.33 9.81 113.37 1.11 1.44 16 26 H 0.12 0.77 8.06 -2.91 -0.02 0.74 16 27 H 0.11 0.76 7.90 -2.91 -0.02 0.73 16 28 H 0.11 1.61 8.06 -2.91 -0.02 1.58 16 29 H 0.08 0.95 7.38 -2.39 -0.02 0.93 16 30 H 0.08 1.03 7.66 -2.39 -0.02 1.01 16 31 H 0.16 2.06 6.30 -2.91 -0.02 2.04 16 32 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.08 1.82 8.08 -2.39 -0.02 1.80 16 34 H 0.05 1.04 8.08 -2.39 -0.02 1.02 16 35 H 0.34 9.13 8.72 -89.69 -0.78 8.35 16 36 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 42 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.14 3.01 6.30 -2.91 -0.02 2.99 16 44 H 0.06 0.92 7.66 -2.39 -0.02 0.90 16 45 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.06 0.95 7.66 -2.39 -0.02 0.94 16 Total: -1.00 -70.17 385.62 3.02 -67.16 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.17 Total: 16.20 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 5.51 Total: -33.04 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -3.08 Total: -79.56 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -1.61 Total: -17.46 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.17 3.02 -67.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000237139652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.216 kcal (2) G-P(sol) polarization free energy of solvation -70.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds