Wall clock time and date at job start Tue Mar 31 2020 11:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35983 * 117.00195 * 2 1 4 4 C 1.38695 * 119.99718 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.99779 * 180.02562 * 4 3 2 6 6 C 1.38697 * 119.99995 * 0.02562 * 5 4 3 7 7 O 1.35979 * 120.00180 * 179.97438 * 6 5 4 8 8 C 1.42899 * 117.00041 * 180.02562 * 7 6 5 9 9 C 1.53006 * 109.47131 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47124 * 65.01768 * 9 8 7 11 11 C 1.46845 * 111.00184 * 200.01512 * 10 9 8 12 12 C 1.53032 * 109.52508 * 174.16420 * 11 10 9 13 13 C 1.53118 * 109.28137 * 59.17883 * 12 11 10 14 14 C 1.50709 * 109.57630 * 182.41002 * 13 12 11 15 15 H 1.08000 * 119.99637 * 119.71281 * 14 13 12 16 16 C 1.37868 * 119.99649 * 299.71699 * 14 13 12 17 17 N 1.31511 * 120.00695 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99645 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47109 * 89.99638 * 18 16 14 20 20 H 1.48499 * 109.46978 * 209.99777 * 18 16 14 21 21 H 1.48501 * 109.46969 * 329.99837 * 18 16 14 22 22 C 1.53123 * 109.15988 * 302.34712 * 13 12 11 23 23 C 1.46853 * 110.99746 * 75.80457 * 10 9 8 24 24 C 1.38702 * 120.00025 * 0.25394 * 6 5 4 25 25 C 1.38136 * 119.99413 * 359.49181 * 24 6 5 26 26 H 1.09000 * 109.47282 * 59.99816 * 1 2 3 27 27 H 1.09002 * 109.47250 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46934 * 299.99746 * 1 2 3 29 29 H 1.07995 * 120.00705 * 0.02562 * 4 3 2 30 30 H 1.07998 * 120.00199 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.46807 * 299.99870 * 8 7 6 32 32 H 1.08998 * 109.47753 * 60.00135 * 8 7 6 33 33 H 1.08998 * 109.47148 * 185.02066 * 9 8 7 34 34 H 1.08998 * 109.46969 * 305.02077 * 9 8 7 35 35 H 1.09004 * 109.46005 * 294.17711 * 11 10 9 36 36 H 1.08999 * 109.45873 * 54.14357 * 11 10 9 37 37 H 1.09007 * 109.50228 * 299.23638 * 12 11 10 38 38 H 1.09002 * 109.50335 * 179.12195 * 12 11 10 39 39 H 1.08998 * 109.52136 * 62.25245 * 13 12 11 40 40 H 0.96999 * 120.00213 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.50199 * 297.71113 * 22 13 12 42 42 H 1.08993 * 109.53386 * 177.61580 * 22 13 12 43 43 H 1.08999 * 109.46305 * 305.85550 * 23 10 9 44 44 H 1.08998 * 109.46031 * 65.83820 * 23 10 9 45 45 H 1.08000 * 120.00510 * 179.72208 * 24 6 5 46 46 H 1.08005 * 119.99419 * 180.22980 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4314 1.2841 0.0005 5 6 4.0586 2.5149 0.0011 6 6 3.3032 3.6781 0.0016 7 8 3.9206 4.8897 0.0027 8 6 3.0807 6.0458 0.0037 9 6 3.9480 7.3063 0.0042 10 7 4.7069 7.3789 -1.2515 11 6 5.8684 8.2668 -1.1138 12 6 6.7132 8.2051 -2.3883 13 6 5.8577 8.6348 -3.5833 14 6 6.6658 8.5200 -4.8502 15 1 6.3373 7.8638 -5.6425 16 6 7.8243 9.2527 -4.9975 17 7 8.2241 10.0522 -4.0328 18 14 8.8264 9.1099 -6.5676 19 1 8.3565 10.1211 -7.5484 20 1 10.2606 9.3451 -6.2625 21 1 8.6586 7.7499 -7.1399 22 6 4.6297 7.7247 -3.6753 23 6 3.8452 7.8003 -2.3635 24 6 1.9181 3.6056 0.0069 25 6 1.2910 2.3748 0.0011 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 4.0196 0.3784 0.0005 30 1 5.1371 2.5714 0.0019 31 1 2.4514 6.0385 -0.8863 32 1 2.4514 6.0370 0.8937 33 1 3.3106 8.1858 0.0949 34 1 4.6401 7.2708 0.8455 35 1 5.5268 9.2894 -0.9536 36 1 6.4705 7.9477 -0.2631 37 1 7.0666 7.1854 -2.5417 38 1 7.5668 8.8761 -2.2919 39 1 5.5363 9.6676 -3.4485 40 1 9.0390 10.5679 -4.1367 41 1 4.9503 6.6975 -3.8490 42 1 3.9946 8.0518 -4.4985 43 1 2.9780 7.1424 -2.4205 44 1 3.5134 8.8252 -2.1976 45 1 1.3299 4.5113 0.0119 46 1 0.2125 2.3183 0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260447977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:05 Heat of formation + Delta-G solvation = -69.227637 kcal Electronic energy + Delta-G solvation = -24734.144683 eV Core-core repulsion = 21202.449168 eV Total energy + Delta-G solvation = -3531.695515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.31472 -40.16597 -39.46639 -37.28545 -35.78167 -33.50564 -32.14779 -31.58730 -30.75216 -29.56335 -27.87193 -27.30405 -24.75943 -23.79058 -23.35610 -22.87591 -21.87474 -20.36146 -19.38136 -18.54935 -18.45854 -17.40741 -17.25140 -16.64981 -16.53268 -15.98158 -15.72402 -15.63855 -15.37564 -14.92860 -14.82440 -14.48712 -14.35029 -14.29082 -13.95151 -13.54510 -13.49198 -13.24535 -12.98627 -12.86077 -12.80164 -12.65626 -12.38352 -12.29857 -12.04841 -11.92274 -11.84364 -11.50870 -11.36442 -11.22203 -10.76751 -10.65154 -10.36673 -10.03501 -9.12117 -8.64211 -8.07726 -6.20748 0.29970 0.52866 1.40170 1.41415 1.51687 2.34345 2.43880 2.50844 2.78785 3.02599 3.19090 3.78306 3.88325 3.99492 4.12700 4.19674 4.23464 4.32881 4.36240 4.40137 4.43541 4.44006 4.54173 4.57172 4.58303 4.66280 4.73214 4.77190 4.87982 4.91767 4.95662 4.98476 5.11454 5.11862 5.24170 5.32103 5.35154 5.39721 5.57437 5.63327 5.65003 6.01336 6.03891 6.30824 6.34289 6.41957 6.44637 6.66262 6.90471 7.46713 8.96830 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021353 B = 0.002650 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.964115 B =10563.712888 C =11167.201325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.073 3.927 4 C -0.119 4.119 5 C -0.129 4.129 6 C 0.084 3.916 7 O -0.318 6.318 8 C 0.069 3.931 9 C 0.052 3.948 10 N -0.542 5.542 11 C 0.071 3.929 12 C -0.095 4.095 13 C 0.045 3.955 14 C -0.533 4.533 15 H 0.048 0.952 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 0.952 3.048 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.271 1.271 22 C -0.099 4.099 23 C 0.066 3.934 24 C -0.175 4.175 25 C -0.167 4.167 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.064 0.936 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.020 0.980 36 H 0.070 0.930 37 H 0.025 0.975 38 H 0.061 0.939 39 H -0.009 1.009 40 H 0.260 0.740 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.028 0.972 45 H 0.148 0.852 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.377 -14.671 12.419 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.028 3.972 4 C -0.138 4.138 5 C -0.147 4.147 6 C 0.038 3.962 7 O -0.232 6.232 8 C -0.006 4.006 9 C -0.076 4.076 10 N -0.267 5.267 11 C -0.056 4.056 12 C -0.134 4.134 13 C 0.026 3.974 14 C -0.571 4.571 15 H 0.066 0.934 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.778 3.222 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.196 1.196 22 C -0.137 4.137 23 C -0.061 4.061 24 C -0.194 4.194 25 C -0.185 4.185 26 H 0.080 0.920 27 H 0.135 0.865 28 H 0.083 0.917 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.038 0.962 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.009 0.991 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.046 0.954 45 H 0.165 0.835 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.785 -15.150 12.359 25.768 hybrid contribution 0.284 1.251 -0.824 1.524 sum -16.501 -13.900 11.535 24.465 Atomic orbital electron populations 1.23305 0.76756 1.05429 1.02079 1.86043 1.23183 1.26533 1.89398 1.19050 0.92475 0.84865 1.00824 1.20402 0.91931 0.97958 1.03506 1.20426 1.00689 0.89523 1.04098 1.19224 0.91826 0.85968 0.99139 1.86202 1.36342 1.12138 1.88561 1.22958 0.92727 0.82911 1.02027 1.22236 0.97341 0.95571 0.92419 1.61868 1.08659 1.51700 1.04483 1.22016 0.92012 0.93115 0.98467 1.21413 0.99069 0.98828 0.94046 1.18656 0.92306 0.92859 0.93576 1.21581 1.08323 1.24876 1.02352 0.93365 1.25730 0.98564 0.94964 0.99387 1.70006 1.24019 1.28049 1.33596 0.85649 0.77918 0.78493 0.80151 1.20059 1.20806 1.19562 1.21523 0.97002 0.99394 0.95800 1.22081 0.95168 0.97882 0.91007 1.21284 0.92917 0.99404 1.05808 1.21281 1.01115 0.91095 1.05044 0.92042 0.86472 0.91732 0.83600 0.84541 0.91792 0.89343 0.90867 0.89795 0.96181 0.91139 0.95620 0.92043 0.99107 0.93076 0.93747 0.92889 0.89829 0.95431 0.83459 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.53 10.50 -93.36 -0.98 -7.51 16 3 C 0.07 1.55 6.68 22.49 0.15 1.70 16 4 C -0.12 -2.68 9.98 22.36 0.22 -2.46 16 5 C -0.13 -3.21 9.98 22.36 0.22 -2.99 16 6 C 0.08 2.16 6.69 22.49 0.15 2.31 16 7 O -0.32 -9.04 10.09 -93.31 -0.94 -9.98 16 8 C 0.07 1.52 4.93 71.98 0.36 1.88 16 9 C 0.05 1.31 5.39 86.31 0.47 1.77 16 10 N -0.54 -18.68 4.53 -896.36 -4.06 -22.74 16 11 C 0.07 2.81 5.43 86.32 0.47 3.28 16 12 C -0.10 -4.71 5.12 30.64 0.16 -4.55 16 13 C 0.04 2.31 2.16 -11.46 -0.02 2.28 16 14 C -0.53 -30.48 8.56 25.60 0.22 -30.26 16 15 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 16 C 0.01 0.68 5.31 84.65 0.45 1.13 16 17 N -0.92 -53.98 11.37 21.44 0.24 -53.73 16 18 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 C -0.10 -4.26 5.32 30.65 0.16 -4.10 16 23 C 0.07 2.28 5.29 86.32 0.46 2.73 16 24 C -0.18 -3.64 9.03 22.36 0.20 -3.44 16 25 C -0.17 -3.13 9.03 22.35 0.20 -2.93 16 26 H 0.06 0.55 7.66 -2.39 -0.02 0.54 16 27 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.53 7.66 -2.38 -0.02 0.51 16 29 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 30 H 0.14 3.30 8.06 -2.91 -0.02 3.27 16 31 H 0.06 1.36 6.23 -2.38 -0.01 1.35 16 32 H 0.09 1.41 7.65 -2.39 -0.02 1.39 16 33 H 0.07 1.56 8.00 -2.39 -0.02 1.54 16 34 H 0.08 2.06 7.79 -2.39 -0.02 2.05 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 37 H 0.02 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.06 3.39 6.18 -2.39 -0.01 3.38 16 39 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 40 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.08 2.42 6.65 -2.39 -0.02 2.40 16 44 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.15 2.37 6.29 -2.91 -0.02 2.36 16 46 H 0.15 1.95 6.29 -2.91 -0.02 1.93 16 Total: -1.00 -67.83 363.56 2.21 -65.62 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.95 Total: 13.86 kcal Atomic # 6 Polarization: -37.31 SS G_CDS: 4.97 Total: -32.34 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -3.82 Total: -76.48 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -1.92 Total: -17.49 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -67.83 2.21 -65.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260447977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.606 kcal (2) G-P(sol) polarization free energy of solvation -67.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds