Wall clock time and date at job start Tue Mar 31 2020 08:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46809 * 2 1 4 4 C 1.46496 * 120.00271 * 269.99618 * 3 2 1 5 5 C 1.50703 * 109.47266 * 270.00317 * 4 3 2 6 6 H 1.07990 * 119.99879 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99602 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99623 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00294 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47144 * 90.00354 * 9 7 5 11 11 H 1.48507 * 109.46940 * 210.00123 * 9 7 5 12 12 H 1.48504 * 109.47197 * 330.00114 * 9 7 5 13 13 C 1.34777 * 119.99854 * 90.00362 * 3 2 1 14 14 O 1.21279 * 120.00162 * 179.97438 * 13 3 2 15 15 C 1.50706 * 120.00146 * 359.97438 * 13 3 2 16 16 C 1.52999 * 109.46953 * 180.02562 * 15 13 3 17 17 O 1.42905 * 109.46728 * 180.02562 * 16 15 13 18 18 C 1.35896 * 117.00039 * 179.97438 * 17 16 15 19 19 C 1.38757 * 120.05265 * 359.97438 * 18 17 16 20 20 C 1.38130 * 119.94053 * 180.02562 * 19 18 17 21 21 C 1.38281 * 120.05783 * 0.02562 * 20 19 18 22 22 C 1.50703 * 119.94546 * 179.97438 * 21 20 19 23 23 C 1.38248 * 120.10986 * 359.96082 * 21 20 19 24 24 C 1.38166 * 120.05842 * 359.76355 * 23 21 20 25 25 C 1.50701 * 120.02867 * 180.25591 * 24 23 21 26 26 H 1.08998 * 109.47221 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47554 * 299.99871 * 1 2 3 28 28 H 1.09006 * 109.46916 * 59.99897 * 1 2 3 29 29 H 1.08999 * 109.47110 * 240.00760 * 2 1 3 30 30 H 1.08999 * 109.47318 * 119.99593 * 2 1 3 31 31 H 1.09000 * 109.47177 * 30.00668 * 4 3 2 32 32 H 1.09000 * 109.47021 * 150.00469 * 4 3 2 33 33 H 0.96998 * 120.00010 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.46974 * 60.00144 * 15 13 3 35 35 H 1.09001 * 109.46547 * 300.00234 * 15 13 3 36 36 H 1.09000 * 109.47486 * 60.00062 * 16 15 13 37 37 H 1.09001 * 109.47362 * 299.99339 * 16 15 13 38 38 H 1.07997 * 120.03063 * 0.02562 * 19 18 17 39 39 H 1.07996 * 119.96795 * 179.97438 * 20 19 18 40 40 H 1.08995 * 109.46770 * 90.00180 * 22 21 20 41 41 H 1.08999 * 109.47261 * 209.99882 * 22 21 20 42 42 H 1.09001 * 109.47108 * 330.00183 * 22 21 20 43 43 H 1.07999 * 119.96883 * 180.02562 * 23 21 20 44 44 H 1.08999 * 109.46852 * 270.27195 * 25 24 23 45 45 H 1.08994 * 109.46996 * 30.28079 * 25 24 23 46 46 H 1.08996 * 109.46797 * 150.27971 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7037 6 1 4.3425 1.2304 -1.0961 7 6 4.1490 2.3898 -2.8779 8 7 5.3910 2.1828 -3.2578 9 14 3.0127 3.4353 -3.9291 10 1 3.1163 4.8556 -3.5080 11 1 3.4057 3.3122 -5.3559 12 1 1.6130 2.9694 -3.7591 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9913 1.3063 2.4724 16 6 2.3222 2.2439 3.6353 17 8 2.0842 1.5701 4.8728 18 6 2.3310 2.2678 6.0126 19 6 2.7934 3.5741 5.9413 20 6 3.0441 4.2810 7.1013 21 6 2.8351 3.6877 8.3327 22 6 3.1099 4.4611 9.5967 23 6 2.3741 2.3864 8.4064 24 6 2.1165 1.6770 7.2491 25 6 1.6086 0.2605 7.3301 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5817 1.6879 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 5.7171 2.5733 -4.0836 34 1 2.6212 0.4186 2.5302 35 1 0.9432 1.0125 2.5299 36 1 1.6920 3.1313 3.5772 37 1 3.3702 2.5380 3.5779 38 1 2.9572 4.0378 4.9798 39 1 3.4044 5.2976 7.0463 40 1 2.2074 4.9904 9.9021 41 1 3.4117 3.7723 10.3857 42 1 3.9092 5.1799 9.4163 43 1 2.2113 1.9255 9.3694 44 1 2.4535 -0.4277 7.3519 45 1 1.0167 0.1381 8.2371 46 1 0.9882 0.0466 6.4598 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264006885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:37 Heat of formation + Delta-G solvation = -84.176475 kcal Electronic energy + Delta-G solvation = -24548.148925 eV Core-core repulsion = 21015.805180 eV Total energy + Delta-G solvation = -3532.343745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39436 -40.76328 -38.72100 -37.08534 -34.93675 -34.32550 -33.04307 -32.35696 -31.68316 -29.61706 -28.09236 -27.12990 -25.91215 -24.41085 -23.83319 -22.37266 -21.63056 -19.92567 -19.18638 -19.05125 -17.84239 -17.47780 -17.22586 -16.95447 -16.33107 -15.85673 -15.80697 -15.30555 -14.88123 -14.74626 -14.71209 -14.53038 -14.37593 -14.10823 -14.00450 -13.82828 -13.58035 -13.33029 -13.30962 -13.15858 -12.82678 -12.69267 -12.54807 -12.46651 -12.31219 -12.20711 -12.04890 -11.90778 -11.76037 -11.67871 -11.60976 -10.85145 -10.78182 -9.77337 -9.47297 -8.94142 -8.35846 -6.41077 0.35345 0.43747 1.31131 1.35193 1.43557 1.68263 1.82939 2.29225 2.53990 2.74078 2.98574 3.56478 3.78781 3.84186 3.86505 3.94201 4.04772 4.11258 4.24958 4.36742 4.37727 4.41548 4.54857 4.59759 4.67974 4.70240 4.76562 4.79832 4.81063 4.86210 4.89835 4.90160 4.99824 5.02339 5.02540 5.15264 5.36287 5.39048 5.40226 5.45175 5.50856 5.61309 5.67501 5.88848 6.21006 6.37925 6.60147 6.63584 7.17984 7.33254 8.81153 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.020566 B = 0.002794 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.137203 B =10017.986651 C =10881.691016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.597 5.597 4 C 0.225 3.775 5 C -0.536 4.536 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.504 3.496 14 O -0.595 6.595 15 C -0.122 4.122 16 C 0.085 3.915 17 O -0.315 6.315 18 C 0.100 3.900 19 C -0.217 4.217 20 C -0.099 4.099 21 C -0.127 4.127 22 C -0.106 4.106 23 C -0.088 4.088 24 C -0.125 4.125 25 C -0.102 4.102 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.019 0.981 33 H 0.269 0.731 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.119 0.881 39 H 0.135 0.865 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.155 0.845 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.335 -3.630 23.556 26.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.327 5.327 4 C 0.102 3.898 5 C -0.575 4.575 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.293 3.707 14 O -0.477 6.477 15 C -0.161 4.161 16 C 0.009 3.991 17 O -0.229 6.229 18 C 0.055 3.945 19 C -0.236 4.236 20 C -0.117 4.117 21 C -0.127 4.127 22 C -0.163 4.163 23 C -0.106 4.106 24 C -0.126 4.126 25 C -0.158 4.158 26 H 0.113 0.887 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.137 0.863 39 H 0.153 0.847 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.173 0.827 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.089 -3.241 23.361 26.502 hybrid contribution 0.566 0.952 -1.345 1.742 sum -11.522 -2.290 22.015 24.954 Atomic orbital electron populations 1.22161 0.93833 1.03755 1.02154 1.21833 0.95735 0.80884 1.04191 1.48029 1.63716 1.15303 1.05662 1.19323 0.94859 0.93074 0.82514 1.21558 0.97070 1.32122 1.06730 0.95305 1.25863 0.96730 0.97208 0.98973 1.70052 1.17442 1.46555 1.24507 0.85716 0.80487 0.78964 0.77795 1.20229 1.19968 1.16042 1.20872 0.77059 0.86377 0.86393 1.90653 1.48150 1.20701 1.88184 1.21427 1.06804 0.99522 0.88341 1.22246 1.00806 0.95043 0.81021 1.85907 1.82929 1.41565 1.12487 1.19109 0.97757 0.91101 0.86562 1.21443 1.06872 0.94973 1.00299 1.21073 0.98967 1.00188 0.91434 1.20197 1.01313 0.95343 0.95836 1.20759 1.02401 0.99742 0.93367 1.21096 0.97970 0.93639 0.97861 1.19622 1.04314 0.98856 0.89773 1.20632 1.01226 0.90635 1.03353 0.88688 0.91884 0.93452 0.90817 0.88375 0.93169 0.96320 0.92251 0.86388 0.85095 0.91911 0.93031 0.86257 0.84668 0.90466 0.90272 0.91258 0.82748 0.90966 0.89664 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.24 71.98 0.74 -2.69 16 2 C 0.10 2.71 5.93 86.38 0.51 3.22 16 3 N -0.60 -23.77 2.46 -826.16 -2.03 -25.80 16 4 C 0.22 10.91 4.23 85.63 0.36 11.27 16 5 C -0.54 -31.65 9.94 25.60 0.25 -31.40 16 6 H 0.03 1.90 8.06 -2.92 -0.02 1.88 16 7 C 0.01 0.61 5.47 84.65 0.46 1.07 16 8 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 9 Si 0.95 44.58 27.47 68.60 1.88 46.47 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 13 C 0.50 20.06 7.67 87.66 0.67 20.73 16 14 O -0.60 -29.53 15.56 -3.03 -0.05 -29.58 16 15 C -0.12 -3.37 4.62 29.85 0.14 -3.23 16 16 C 0.08 2.50 4.03 71.98 0.29 2.79 16 17 O -0.31 -8.62 9.18 -92.39 -0.85 -9.47 16 18 C 0.10 2.66 6.66 22.51 0.15 2.81 16 19 C -0.22 -5.79 9.04 22.37 0.20 -5.59 16 20 C -0.10 -2.19 9.69 22.25 0.22 -1.98 16 21 C -0.13 -2.36 5.88 -19.85 -0.12 -2.48 16 22 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 23 C -0.09 -1.59 9.35 22.25 0.21 -1.38 16 24 C -0.12 -2.73 5.89 -19.77 -0.12 -2.85 16 25 C -0.10 -1.71 9.79 71.24 0.70 -1.01 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.23 7.22 -2.39 -0.02 1.21 16 28 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 30 H 0.10 2.22 6.44 -2.39 -0.02 2.21 16 31 H 0.05 2.24 7.13 -2.39 -0.02 2.22 16 32 H 0.02 0.98 6.85 -2.39 -0.02 0.96 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.12 2.89 7.40 -2.39 -0.02 2.87 16 35 H 0.13 2.78 7.18 -2.39 -0.02 2.77 16 36 H 0.06 1.91 7.62 -2.39 -0.02 1.90 16 37 H 0.05 1.71 7.62 -2.39 -0.02 1.69 16 38 H 0.12 3.37 6.30 -2.91 -0.02 3.35 16 39 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 42 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 43 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 46 H 0.06 1.17 7.53 -2.39 -0.02 1.15 16 Total: -1.00 -77.71 376.50 5.54 -72.17 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.90 Total: 17.32 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.38 Total: -11.27 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.73 Total: -85.64 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.90 Total: -39.05 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Total: -77.71 5.54 -72.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264006885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.002 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds