Wall clock time and date at job start Tue Mar 31 2020 08:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.50705 * 109.47066 * 269.99622 * 4 3 2 6 6 H 1.08001 * 119.99987 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00127 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00037 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47380 * 89.99525 * 9 7 5 11 11 H 1.48502 * 109.46914 * 210.00057 * 9 7 5 12 12 H 1.48507 * 109.46856 * 329.99469 * 9 7 5 13 13 C 1.34777 * 119.99832 * 89.99461 * 3 2 1 14 14 O 1.21278 * 119.99854 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00161 * 0.02562 * 13 3 2 16 16 C 1.53000 * 109.46912 * 179.97438 * 15 13 3 17 17 O 1.42903 * 109.46726 * 179.97438 * 16 15 13 18 18 C 1.35904 * 116.99628 * 180.02562 * 17 16 15 19 19 C 1.38749 * 120.05570 * 0.02562 * 18 17 16 20 20 C 1.38129 * 119.94051 * 180.02562 * 19 18 17 21 21 C 1.50709 * 119.96964 * 179.97438 * 20 19 18 22 22 C 1.38284 * 120.05778 * 0.02562 * 20 19 18 23 23 C 1.38243 * 120.11161 * 359.95461 * 22 20 19 24 24 C 1.38169 * 120.05291 * 359.77102 * 23 22 20 25 25 C 1.50703 * 120.02521 * 180.25246 * 24 23 22 26 26 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 28 28 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 29 29 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 30 30 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 31 31 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 32 32 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 33 33 H 0.97001 * 119.99958 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46980 * 59.99654 * 15 13 3 35 35 H 1.08992 * 109.47158 * 299.99760 * 15 13 3 36 36 H 1.09002 * 109.47398 * 300.00078 * 16 15 13 37 37 H 1.09001 * 109.47194 * 60.00258 * 16 15 13 38 38 H 1.07998 * 120.03283 * 359.97438 * 19 18 17 39 39 H 1.09001 * 109.46814 * 89.99729 * 21 20 19 40 40 H 1.09001 * 109.46866 * 210.00029 * 21 20 19 41 41 H 1.09003 * 109.47124 * 330.00063 * 21 20 19 42 42 H 1.08005 * 119.94205 * 179.97438 * 22 20 19 43 43 H 1.08000 * 119.97239 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.47019 * 270.27636 * 25 24 23 45 45 H 1.08998 * 109.47090 * 30.27533 * 25 24 23 46 46 H 1.09005 * 109.47221 * 150.27358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 5.3912 2.1825 -3.2577 9 14 3.0130 3.4350 -3.9292 10 1 3.1163 4.8553 -3.5082 11 1 3.4060 3.3117 -5.3560 12 1 1.6132 2.9689 -3.7593 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 6 2.3240 2.2433 3.6352 17 8 2.0856 1.5697 4.8728 18 6 2.3322 2.2676 6.0125 19 6 2.7935 3.5742 5.9412 20 6 3.0438 4.2812 7.1012 21 6 3.5455 5.7003 7.0245 22 6 2.8355 3.6877 8.3327 23 6 2.3755 2.3862 8.4064 24 6 2.1182 1.6766 7.2490 25 6 1.6114 0.2597 7.3301 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0284 32 1 2.0957 3.1410 -1.1384 33 1 5.7173 2.5730 -4.0836 34 1 2.6227 0.4187 2.5299 35 1 0.9444 1.0115 2.5302 36 1 3.3719 2.5375 3.5772 37 1 1.6937 3.1308 3.5778 38 1 2.9576 4.0378 4.9797 39 1 2.6975 6.3849 7.0062 40 1 4.1662 5.9137 7.8947 41 1 4.1356 5.8285 6.1170 42 1 3.0322 4.2422 9.2385 43 1 2.2132 1.9250 9.3694 44 1 2.4568 -0.4279 7.3518 45 1 1.0197 0.1368 8.2373 46 1 0.9909 0.0454 6.4599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264006956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:42 Heat of formation + Delta-G solvation = -64.502865 kcal Electronic energy + Delta-G solvation = -24677.254840 eV Core-core repulsion = 21145.764206 eV Total energy + Delta-G solvation = -3531.490634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39796 -39.29379 -37.67774 -35.50334 -33.95602 -32.85619 -31.76392 -30.36008 -29.88179 -29.32084 -27.80738 -25.17950 -24.49689 -23.02001 -22.45157 -21.50076 -20.94513 -18.39554 -17.66638 -16.96739 -16.39064 -16.27901 -16.08303 -15.54071 -15.45377 -14.76997 -14.30366 -14.10933 -13.76896 -13.66542 -13.52039 -13.39676 -13.15404 -12.98178 -12.74397 -12.66457 -12.38314 -12.14266 -12.00265 -11.86200 -11.72806 -11.50650 -11.41102 -11.33598 -11.00173 -10.86129 -10.76137 -10.58057 -10.50871 -10.18748 -9.57764 -9.14224 -8.79775 -8.61531 -8.11960 -7.79649 -6.11239 -4.10344 1.19877 1.36241 2.98866 3.23638 3.27196 3.33131 3.34870 3.61548 3.90843 4.37106 4.60196 4.68295 4.85660 4.91398 5.02175 5.03212 5.05911 5.14494 5.22802 5.23571 5.42525 5.45405 5.46015 5.49201 5.54973 5.55736 5.59428 5.66563 5.67876 5.83490 5.84974 5.86410 5.98718 6.12086 6.13485 6.24280 6.37047 6.38088 6.49975 6.66667 6.73916 6.90184 7.27833 7.38107 7.57811 8.16644 8.43397 8.84578 8.92961 9.48745 11.02128 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018122 B = 0.003012 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.745964 B = 9292.460390 C =10315.263218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.589 5.589 4 C 0.216 3.784 5 C -0.530 4.530 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.513 3.487 14 O -0.543 6.543 15 C -0.138 4.138 16 C 0.076 3.924 17 O -0.315 6.315 18 C 0.139 3.861 19 C -0.205 4.205 20 C -0.053 4.053 21 C -0.117 4.117 22 C -0.160 4.160 23 C -0.083 4.083 24 C -0.128 4.128 25 C -0.103 4.103 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.031 0.969 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.132 0.868 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.120 0.880 43 H 0.126 0.874 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.691 -2.267 20.815 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.321 5.321 4 C 0.096 3.904 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.300 3.700 14 O -0.421 6.421 15 C -0.178 4.178 16 C 0.000 4.000 17 O -0.229 6.229 18 C 0.094 3.906 19 C -0.223 4.223 20 C -0.053 4.053 21 C -0.173 4.173 22 C -0.178 4.178 23 C -0.101 4.101 24 C -0.128 4.128 25 C -0.160 4.160 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.413 -1.823 20.588 22.711 hybrid contribution -0.312 0.676 -0.832 1.116 sum -9.725 -1.147 19.756 22.050 Atomic orbital electron populations 1.22230 0.96662 1.01707 1.02240 1.21489 0.93480 0.83666 1.03338 1.47911 1.63775 1.13489 1.06896 1.19667 0.97390 0.93386 0.79988 1.21323 0.95314 1.33004 1.07184 0.90746 1.24857 0.95005 0.95797 0.97341 1.69897 1.15140 1.44932 1.23571 0.86850 0.81448 0.81594 0.79790 1.19903 1.21039 1.19067 1.19973 0.78399 0.86774 0.84883 1.90683 1.45911 1.18206 1.87310 1.21538 1.04474 1.00046 0.91781 1.22491 1.02198 0.95079 0.80197 1.85957 1.82465 1.41702 1.12727 1.18781 0.95275 0.90441 0.86147 1.21267 1.06942 0.94470 0.99645 1.19710 0.96914 0.96104 0.92536 1.20828 1.01117 0.92439 1.02958 1.20881 1.04297 0.95640 0.96996 1.20812 0.98090 0.94135 0.97061 1.19244 1.05588 0.97834 0.90180 1.20581 1.00882 0.92016 1.02481 0.91861 0.92913 0.92233 0.89609 0.91153 0.95150 0.94562 0.92528 0.88156 0.88421 0.90906 0.91201 0.84973 0.91010 0.91456 0.91245 0.86162 0.85627 0.91534 0.91969 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.54 16 3 N -0.59 -11.78 2.46 -175.06 -0.43 -12.21 16 4 C 0.22 5.21 4.23 -5.19 -0.02 5.19 16 5 C -0.53 -15.10 9.94 -34.44 -0.34 -15.45 16 6 H 0.07 2.33 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 9 Si 0.88 21.45 27.47 -169.99 -4.67 16.78 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 13 C 0.51 10.10 7.67 -10.98 -0.08 10.01 16 14 O -0.54 -12.90 15.56 5.56 0.09 -12.81 16 15 C -0.14 -1.99 4.62 -27.88 -0.13 -2.12 16 16 C 0.08 1.09 4.03 37.16 0.15 1.24 16 17 O -0.31 -4.35 9.18 -19.44 -0.18 -4.53 16 18 C 0.14 1.87 6.66 -39.22 -0.26 1.60 16 19 C -0.20 -2.66 8.69 -39.43 -0.34 -3.01 16 20 C -0.05 -0.60 5.88 -104.64 -0.62 -1.21 16 21 C -0.12 -1.06 10.01 36.01 0.36 -0.70 16 22 C -0.16 -1.63 9.70 -39.56 -0.38 -2.01 16 23 C -0.08 -0.84 9.70 -39.60 -0.38 -1.22 16 24 C -0.13 -1.49 5.89 -104.47 -0.62 -2.10 16 25 C -0.10 -0.98 9.79 36.01 0.35 -0.63 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.61 7.22 -51.93 -0.38 0.23 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 31 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 32 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.10 1.32 7.40 -51.93 -0.38 0.94 16 35 H 0.10 1.18 7.19 -51.93 -0.37 0.81 16 36 H 0.07 1.13 7.62 -51.93 -0.40 0.73 16 37 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 38 H 0.13 1.74 6.30 -52.49 -0.33 1.41 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.50 8.08 -51.93 -0.42 0.09 16 41 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 43 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 46 H 0.07 0.71 7.53 -51.93 -0.39 0.32 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -33.72 376.51 -8.31 -42.03 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.51 Total: 0.43 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.06 Total: -8.55 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.34 Total: -39.02 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.09 Total: -17.35 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.67 Total: 16.78 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.72 -8.31 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264006956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.470 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds