Wall clock time and date at job start Tue Mar 31 2020 08:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.47201 * 2 1 4 4 C 1.46496 * 119.99896 * 269.99926 * 3 2 1 5 5 C 1.50705 * 109.47066 * 269.99622 * 4 3 2 6 6 H 1.08001 * 119.99987 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00127 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00037 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00065 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47380 * 89.99525 * 9 7 5 11 11 H 1.48502 * 109.46914 * 210.00057 * 9 7 5 12 12 H 1.48507 * 109.46856 * 329.99469 * 9 7 5 13 13 C 1.34777 * 119.99832 * 89.99461 * 3 2 1 14 14 O 1.21278 * 119.99854 * 179.97438 * 13 3 2 15 15 C 1.50703 * 120.00161 * 0.02562 * 13 3 2 16 16 C 1.53000 * 109.46912 * 179.97438 * 15 13 3 17 17 O 1.42903 * 109.46726 * 179.97438 * 16 15 13 18 18 C 1.35904 * 116.99628 * 180.02562 * 17 16 15 19 19 C 1.38749 * 120.05570 * 0.02562 * 18 17 16 20 20 C 1.38129 * 119.94051 * 180.02562 * 19 18 17 21 21 C 1.50709 * 119.96964 * 179.97438 * 20 19 18 22 22 C 1.38284 * 120.05778 * 0.02562 * 20 19 18 23 23 C 1.38243 * 120.11161 * 359.95461 * 22 20 19 24 24 C 1.38169 * 120.05291 * 359.77102 * 23 22 20 25 25 C 1.50703 * 120.02521 * 180.25246 * 24 23 22 26 26 H 1.08992 * 109.47078 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47448 * 300.00222 * 1 2 3 28 28 H 1.09001 * 109.46659 * 60.00103 * 1 2 3 29 29 H 1.08996 * 109.47448 * 239.99777 * 2 1 3 30 30 H 1.09003 * 109.47167 * 119.99786 * 2 1 3 31 31 H 1.08998 * 109.47205 * 29.99486 * 4 3 2 32 32 H 1.08997 * 109.47416 * 150.00347 * 4 3 2 33 33 H 0.97001 * 119.99958 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46980 * 59.99654 * 15 13 3 35 35 H 1.08992 * 109.47158 * 299.99760 * 15 13 3 36 36 H 1.09002 * 109.47398 * 300.00078 * 16 15 13 37 37 H 1.09001 * 109.47194 * 60.00258 * 16 15 13 38 38 H 1.07998 * 120.03283 * 359.97438 * 19 18 17 39 39 H 1.09001 * 109.46814 * 89.99729 * 21 20 19 40 40 H 1.09001 * 109.46866 * 210.00029 * 21 20 19 41 41 H 1.09003 * 109.47124 * 330.00063 * 21 20 19 42 42 H 1.08005 * 119.94205 * 179.97438 * 22 20 19 43 43 H 1.08000 * 119.97239 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.47019 * 270.27636 * 25 24 23 45 45 H 1.08998 * 109.47090 * 30.27533 * 25 24 23 46 46 H 1.09005 * 109.47221 * 150.27358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2303 -1.0960 7 6 4.1492 2.3896 -2.8778 8 7 5.3912 2.1825 -3.2577 9 14 3.0130 3.4350 -3.9292 10 1 3.1163 4.8553 -3.5082 11 1 3.4060 3.3117 -5.3560 12 1 1.6132 2.9689 -3.7593 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 6 2.3240 2.2433 3.6352 17 8 2.0856 1.5697 4.8728 18 6 2.3322 2.2676 6.0125 19 6 2.7935 3.5742 5.9412 20 6 3.0438 4.2812 7.1012 21 6 3.5455 5.7003 7.0245 22 6 2.8355 3.6877 8.3327 23 6 2.3755 2.3862 8.4064 24 6 2.1182 1.6766 7.2490 25 6 1.6114 0.2597 7.3301 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5818 1.6876 -2.0284 32 1 2.0957 3.1410 -1.1384 33 1 5.7173 2.5730 -4.0836 34 1 2.6227 0.4187 2.5299 35 1 0.9444 1.0115 2.5302 36 1 3.3719 2.5375 3.5772 37 1 1.6937 3.1308 3.5778 38 1 2.9576 4.0378 4.9797 39 1 2.6975 6.3849 7.0062 40 1 4.1662 5.9137 7.8947 41 1 4.1356 5.8285 6.1170 42 1 3.0322 4.2422 9.2385 43 1 2.2132 1.9250 9.3694 44 1 2.4568 -0.4279 7.3518 45 1 1.0197 0.1368 8.2373 46 1 0.9909 0.0454 6.4599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264006956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:42 Heat of formation + Delta-G solvation = -84.349667 kcal Electronic energy + Delta-G solvation = -24678.115462 eV Core-core repulsion = 21145.764206 eV Total energy + Delta-G solvation = -3532.351256 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40750 -40.76570 -38.66053 -37.08706 -34.95748 -34.74767 -33.11294 -31.76704 -30.81595 -30.08844 -29.57078 -26.32805 -25.50324 -24.41560 -23.86622 -22.64878 -21.90350 -19.85662 -19.13816 -18.78585 -17.68722 -17.48839 -17.23207 -16.91815 -16.41136 -16.32965 -15.80169 -15.16693 -14.83142 -14.76382 -14.71818 -14.65505 -14.37378 -14.10482 -13.85112 -13.79933 -13.57892 -13.45286 -13.30885 -13.15876 -12.83835 -12.67116 -12.54988 -12.44739 -12.31881 -12.19121 -12.05005 -11.91847 -11.76124 -11.73301 -11.64994 -10.85297 -10.78460 -9.66952 -9.47554 -9.01899 -8.35961 -6.41317 0.34024 0.47420 1.31112 1.35148 1.43538 1.67785 1.82247 2.29163 2.53438 2.75384 2.98484 3.55567 3.77460 3.82843 3.85525 3.94027 4.10354 4.11719 4.22015 4.32306 4.38082 4.42305 4.56959 4.59666 4.67218 4.68966 4.76139 4.79592 4.81308 4.81720 4.86822 4.89595 4.90025 4.99627 5.02268 5.15349 5.37949 5.38896 5.40037 5.45027 5.54596 5.61068 5.65434 5.89464 6.20843 6.37847 6.59936 6.63260 7.17797 7.32945 8.81057 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018122 B = 0.003012 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.745964 B = 9292.460390 C =10315.263218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.597 5.597 4 C 0.225 3.775 5 C -0.537 4.537 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.274 1.274 12 H -0.237 1.237 13 C 0.504 3.496 14 O -0.595 6.595 15 C -0.121 4.121 16 C 0.085 3.915 17 O -0.315 6.315 18 C 0.110 3.890 19 C -0.226 4.226 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.158 4.158 23 C -0.081 4.081 24 C -0.137 4.137 25 C -0.101 4.101 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.019 0.981 33 H 0.269 0.731 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.149 0.851 43 H 0.158 0.842 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.155 -3.056 22.726 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.327 5.327 4 C 0.103 3.897 5 C -0.576 4.576 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.586 5.586 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.293 3.707 14 O -0.476 6.476 15 C -0.161 4.161 16 C 0.009 3.991 17 O -0.229 6.229 18 C 0.065 3.935 19 C -0.245 4.245 20 C -0.065 4.065 21 C -0.172 4.172 22 C -0.176 4.176 23 C -0.099 4.099 24 C -0.138 4.138 25 C -0.158 4.158 26 H 0.113 0.887 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.166 0.834 43 H 0.176 0.824 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.908 -2.666 22.523 25.616 hybrid contribution 0.548 0.884 -1.291 1.658 sum -11.359 -1.782 21.231 24.145 Atomic orbital electron populations 1.22160 0.93827 1.03763 1.02154 1.21834 0.95739 0.80883 1.04190 1.48031 1.63719 1.15304 1.05664 1.19319 0.94846 0.93073 0.82496 1.21567 0.97091 1.32165 1.06759 0.95299 1.25857 0.96724 0.97187 0.98954 1.70051 1.17447 1.46549 1.24509 0.85718 0.80491 0.78971 0.77797 1.20211 1.19960 1.16036 1.20867 0.77075 0.86386 0.86388 1.90653 1.48125 1.20689 1.88179 1.21425 1.06807 0.99508 0.88339 1.22240 1.00764 0.95033 0.81031 1.85914 1.82843 1.41573 1.12524 1.19115 0.96928 0.90917 0.86568 1.21327 1.08312 0.95008 0.99852 1.20032 0.96870 0.97069 0.92573 1.20864 1.01567 0.91425 1.03381 1.21267 1.02996 0.95934 0.97392 1.21235 0.96771 0.94028 0.97863 1.19625 1.05337 0.98995 0.89840 1.20616 1.01152 0.90710 1.03281 0.88677 0.91892 0.93444 0.90812 0.88387 0.93174 0.96312 0.92239 0.86391 0.85086 0.93075 0.91974 0.86554 0.90164 0.89496 0.92258 0.83372 0.82435 0.91106 0.89667 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.24 71.98 0.74 -2.70 16 2 C 0.10 2.71 5.93 86.38 0.51 3.23 16 3 N -0.60 -23.81 2.46 -826.15 -2.03 -25.84 16 4 C 0.22 10.93 4.23 85.64 0.36 11.29 16 5 C -0.54 -31.74 9.94 25.60 0.25 -31.49 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 7 C 0.01 0.64 5.47 84.65 0.46 1.10 16 8 N -0.95 -60.12 13.96 21.45 0.30 -59.83 16 9 Si 0.95 44.55 27.47 68.60 1.88 46.44 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 13 C 0.50 20.09 7.67 87.66 0.67 20.77 16 14 O -0.59 -29.54 15.56 -3.02 -0.05 -29.58 16 15 C -0.12 -3.38 4.62 29.85 0.14 -3.24 16 16 C 0.09 2.53 4.03 71.98 0.29 2.82 16 17 O -0.31 -8.68 9.18 -92.47 -0.85 -9.53 16 18 C 0.11 2.95 6.66 22.50 0.15 3.10 16 19 C -0.23 -6.11 8.69 22.37 0.19 -5.91 16 20 C -0.07 -1.45 5.88 -19.88 -0.12 -1.56 16 21 C -0.12 -2.02 10.01 71.24 0.71 -1.31 16 22 C -0.16 -2.86 9.70 22.28 0.22 -2.64 16 23 C -0.08 -1.43 9.70 22.25 0.22 -1.21 16 24 C -0.14 -2.99 5.89 -19.77 -0.12 -3.11 16 25 C -0.10 -1.70 9.79 71.24 0.70 -1.01 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.23 7.22 -2.39 -0.02 1.21 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 30 H 0.10 2.23 6.44 -2.39 -0.02 2.21 16 31 H 0.05 2.24 7.13 -2.39 -0.02 2.22 16 32 H 0.02 0.98 6.85 -2.39 -0.02 0.96 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.12 2.91 7.40 -2.39 -0.02 2.89 16 35 H 0.13 2.80 7.19 -2.39 -0.02 2.78 16 36 H 0.05 1.71 7.62 -2.39 -0.02 1.70 16 37 H 0.06 1.92 7.62 -2.39 -0.02 1.90 16 38 H 0.12 3.38 6.30 -2.91 -0.02 3.36 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 41 H 0.06 1.14 8.08 -2.39 -0.02 1.12 16 42 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 43 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 46 H 0.06 1.15 7.53 -2.38 -0.02 1.13 16 Total: -1.00 -77.92 376.51 5.54 -72.38 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.90 Total: 17.84 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.38 Total: -11.88 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -1.73 Total: -85.67 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -0.90 Total: -39.12 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -77.92 5.54 -72.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264006956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.970 kcal (2) G-P(sol) polarization free energy of solvation -77.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds