Wall clock time and date at job start Tue Mar 31 2020 09:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42900 * 109.46991 * 2 1 4 4 C 1.35897 * 117.00165 * 179.97438 * 3 2 1 5 5 C 1.38733 * 120.06155 * 180.02562 * 4 3 2 6 6 C 1.38136 * 119.94920 * 180.02562 * 5 4 3 7 7 C 1.38275 * 120.05297 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.94176 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47086 * 90.00083 * 8 7 6 10 10 C 1.50701 * 109.47086 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00129 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00086 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99688 * 0.02562 * 12 10 9 14 14 C 1.46494 * 120.00055 * 179.97438 * 12 10 9 15 15 H 1.08999 * 109.47245 * 0.02562 * 14 12 10 16 16 C 1.53002 * 109.47253 * 240.00340 * 14 12 10 17 17 C 1.50702 * 109.47281 * 120.00007 * 14 12 10 18 18 H 1.08002 * 119.99340 * 35.00479 * 17 14 12 19 19 C 1.37870 * 120.00290 * 215.00802 * 17 14 12 20 20 N 1.31511 * 119.99900 * 184.91483 * 19 17 14 21 21 Si 1.86799 * 120.00193 * 4.91177 * 19 17 14 22 22 H 1.48503 * 109.47144 * 84.83490 * 21 19 17 23 23 H 1.48492 * 109.47329 * 204.83811 * 21 19 17 24 24 H 1.48504 * 109.46907 * 324.83769 * 21 19 17 25 25 C 1.38265 * 120.11137 * 0.25228 * 7 6 5 26 26 C 1.38147 * 120.05347 * 359.45512 * 25 7 6 27 27 H 1.08997 * 109.46554 * 299.99838 * 1 2 3 28 28 H 1.08997 * 109.46635 * 59.99762 * 1 2 3 29 29 H 1.08993 * 109.46627 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47204 * 240.00536 * 2 1 3 31 31 H 1.09004 * 109.46953 * 120.00022 * 2 1 3 32 32 H 1.08000 * 120.02321 * 0.02562 * 5 4 3 33 33 H 1.07998 * 119.97617 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.46875 * 209.99928 * 8 7 6 35 35 H 1.09003 * 109.47108 * 330.00283 * 8 7 6 36 36 H 1.08997 * 109.47395 * 300.00170 * 9 8 7 37 37 H 1.08999 * 109.47225 * 59.99669 * 9 8 7 38 38 H 1.09001 * 109.46754 * 90.00307 * 13 12 10 39 39 H 1.08998 * 109.46356 * 209.99878 * 13 12 10 40 40 H 1.08993 * 109.46890 * 329.99733 * 13 12 10 41 41 H 1.08993 * 109.47536 * 54.97744 * 16 14 12 42 42 H 1.09007 * 109.46849 * 174.97894 * 16 14 12 43 43 H 1.08999 * 109.46578 * 294.97291 * 16 14 12 44 44 H 0.97003 * 119.99865 * 179.97438 * 20 19 17 45 45 H 1.08003 * 119.96927 * 179.70335 * 25 7 6 46 46 H 1.08001 * 120.02394 * 180.25032 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8852 2.8069 0.0011 6 6 5.2550 2.9852 0.0011 7 6 6.0962 1.8878 0.0000 8 6 7.5903 2.0853 -0.0005 9 6 8.0965 2.1512 1.4417 10 6 9.5904 2.3494 1.4412 11 8 10.1911 2.4295 0.3906 12 7 10.2591 2.4365 2.6082 13 6 9.5337 2.3381 3.8772 14 6 11.7114 2.6285 2.6076 15 1 12.0711 2.6777 1.5798 16 6 12.3812 1.4562 3.3272 17 6 12.0486 3.9135 3.3192 18 1 11.4597 4.2319 4.1667 19 6 13.1085 4.6826 2.8882 20 7 13.4631 5.7524 3.5659 21 14 14.0411 4.2052 1.3417 22 1 13.3403 4.7525 0.1522 23 1 15.4178 4.7583 1.4031 24 1 14.1064 2.7250 1.2401 25 6 5.5690 0.6097 -0.0063 26 6 4.1998 0.4260 -0.0003 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.2285 3.6643 0.0015 33 1 5.6693 3.9826 0.0020 34 1 8.0668 1.2510 -0.5151 35 1 7.8336 3.0156 -0.5138 36 1 7.6199 2.9855 1.9564 37 1 7.8531 1.2210 1.9551 38 1 9.4894 1.2949 4.1903 39 1 10.0504 2.9240 4.6373 40 1 8.5219 2.7220 3.7479 41 1 12.0663 0.5196 2.8672 42 1 13.4642 1.5530 3.2495 43 1 12.0905 1.4609 4.3778 44 1 14.2092 6.2933 3.2629 45 1 6.2282 -0.2458 -0.0120 46 1 3.7885 -0.5726 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264010264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:11 Heat of formation + Delta-G solvation = -62.820367 kcal Electronic energy + Delta-G solvation = -24369.660169 eV Core-core repulsion = 20838.242494 eV Total energy + Delta-G solvation = -3531.417675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.36772 -39.23545 -37.94785 -35.47258 -33.62764 -32.64704 -31.94759 -31.05605 -30.46528 -28.55340 -26.15381 -25.27506 -24.63392 -24.05043 -22.22771 -21.25173 -20.36885 -18.48500 -18.18991 -17.25592 -16.40872 -16.29906 -16.23999 -15.50563 -15.13318 -15.05713 -14.47944 -14.14829 -13.73183 -13.67969 -13.61407 -13.16228 -13.03547 -12.89660 -12.53616 -12.39354 -12.33842 -12.12391 -11.99950 -11.90115 -11.53654 -11.46422 -11.22774 -11.05566 -11.03119 -10.87077 -10.73730 -10.67886 -10.41177 -9.77622 -9.28360 -9.13110 -8.98507 -8.59966 -8.17869 -7.64191 -6.16347 -4.18404 1.21311 1.29136 2.93323 3.31969 3.36118 3.39646 3.46710 3.59589 3.93237 4.39410 4.52035 4.52733 4.69437 4.75431 4.81045 4.85696 5.07769 5.20097 5.20378 5.25341 5.27937 5.37759 5.40676 5.45394 5.56857 5.62895 5.68316 5.83495 5.88397 5.98194 6.07424 6.15242 6.23627 6.29497 6.31554 6.37394 6.41480 6.60059 6.62868 6.65908 6.94523 7.09573 7.22051 7.50021 7.66037 8.16938 8.52429 8.84762 8.98740 9.46507 10.95497 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030658 B = 0.002459 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.078494 B =11383.907961 C =11497.667152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.119 3.881 5 C -0.150 4.150 6 C -0.076 4.076 7 C -0.111 4.111 8 C -0.062 4.062 9 C -0.132 4.132 10 C 0.502 3.498 11 O -0.559 6.559 12 N -0.590 5.590 13 C 0.083 3.917 14 C 0.221 3.779 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.525 4.525 18 H 0.078 0.922 19 C 0.078 3.922 20 N -0.892 5.892 21 Si 0.876 3.124 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.264 1.264 25 C -0.077 4.077 26 C -0.207 4.207 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.266 0.734 45 H 0.125 0.875 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.680 -12.136 -4.946 26.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.074 3.926 5 C -0.168 4.168 6 C -0.094 4.094 7 C -0.111 4.111 8 C -0.100 4.100 9 C -0.172 4.172 10 C 0.290 3.710 11 O -0.439 6.439 12 N -0.321 5.321 13 C -0.061 4.061 14 C 0.120 3.880 15 H 0.082 0.918 16 C -0.205 4.205 17 C -0.563 4.563 18 H 0.096 0.904 19 C -0.125 4.125 20 N -0.529 5.529 21 Si 0.703 3.297 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.095 4.095 26 C -0.226 4.226 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.143 0.857 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.365 -11.794 -5.455 25.866 hybrid contribution 0.561 -0.358 -0.541 0.858 sum -21.804 -12.152 -5.996 25.672 Atomic orbital electron populations 1.21776 0.92810 1.02814 1.03525 1.22759 0.95797 0.82150 1.01367 1.86054 1.19278 1.29124 1.88881 1.18977 0.82057 0.94243 0.97286 1.20420 0.95224 0.94719 1.06464 1.20955 0.91945 0.99093 0.97393 1.19931 0.96064 0.92936 1.02189 1.20294 0.89430 1.04198 0.96048 1.21669 0.93636 1.03649 0.98253 1.20527 0.89319 0.77095 0.84079 1.90630 1.70139 1.51961 1.31200 1.48326 1.09628 1.69339 1.04833 1.21626 0.96331 1.00380 0.87780 1.19301 0.75884 0.94511 0.98268 0.91811 1.22206 1.00690 0.97141 1.00415 1.21121 1.15003 1.04438 1.15713 0.90415 1.24965 0.96637 0.94350 0.96575 1.69891 1.28045 1.15955 1.39022 0.86876 0.78931 0.79597 0.84320 1.19623 1.21431 1.18872 1.20881 0.94111 0.96967 0.97562 1.21195 0.94344 0.97832 1.09212 0.91499 0.91550 0.90415 0.92129 0.92067 0.85344 0.85105 0.90422 0.90166 0.89202 0.89580 0.93938 0.90074 0.92411 0.95579 0.92697 0.93208 0.92407 0.85736 0.85758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.41 16 2 C 0.05 0.38 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.32 10.14 -19.42 -0.20 -3.52 16 4 C 0.12 1.32 6.69 -39.22 -0.26 1.06 16 5 C -0.15 -1.65 9.99 -39.44 -0.39 -2.05 16 6 C -0.08 -0.86 9.69 -39.60 -0.38 -1.24 16 7 C -0.11 -1.31 5.14 -104.60 -0.54 -1.85 16 8 C -0.06 -0.84 4.63 -27.88 -0.13 -0.97 16 9 C -0.13 -1.89 4.23 -27.88 -0.12 -2.01 16 10 C 0.50 10.03 7.67 -10.98 -0.08 9.95 16 11 O -0.56 -13.31 15.31 5.56 0.09 -13.23 16 12 N -0.59 -12.22 2.75 -175.26 -0.48 -12.70 16 13 C 0.08 1.35 9.39 59.85 0.56 1.91 16 14 C 0.22 5.35 2.30 -69.08 -0.16 5.19 16 15 H 0.06 1.70 4.05 -51.93 -0.21 1.49 16 16 C -0.15 -3.09 9.10 37.16 0.34 -2.75 16 17 C -0.52 -14.43 8.72 -34.44 -0.30 -14.73 16 18 H 0.08 2.25 6.82 -52.49 -0.36 1.89 16 19 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 20 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 21 Si 0.88 22.36 26.99 -169.99 -4.59 17.77 16 22 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.26 -6.52 6.82 56.52 0.39 -6.14 16 25 C -0.08 -0.83 9.69 -39.60 -0.38 -1.22 16 26 C -0.21 -2.11 9.04 -39.43 -0.36 -2.46 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 35 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 36 H 0.09 1.19 7.40 -51.93 -0.38 0.81 16 37 H 0.09 1.06 8.11 -51.93 -0.42 0.64 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.45 6.56 -51.93 -0.34 1.10 16 40 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.98 7.84 -51.93 -0.41 0.58 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 46 H 0.12 0.99 6.30 -52.49 -0.33 0.66 16 LS Contribution 373.94 15.07 5.64 5.64 Total: -1.00 -33.29 373.94 -7.87 -41.16 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.37 Total: -0.20 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.72 Total: -8.84 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.29 Total: -38.78 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.11 Total: -16.74 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.59 Total: 17.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.29 -7.87 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264010264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.665 kcal (2) G-P(sol) polarization free energy of solvation -33.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds