Wall clock time and date at job start Tue Mar 31 2020 09:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42900 * 109.46991 * 2 1 4 4 C 1.35897 * 117.00165 * 179.97438 * 3 2 1 5 5 C 1.38733 * 120.06155 * 180.02562 * 4 3 2 6 6 C 1.38136 * 119.94920 * 180.02562 * 5 4 3 7 7 C 1.38275 * 120.05297 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.94176 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47086 * 90.00083 * 8 7 6 10 10 C 1.50701 * 109.47086 * 180.02562 * 9 8 7 11 11 O 1.21280 * 120.00129 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00086 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99688 * 0.02562 * 12 10 9 14 14 C 1.46494 * 120.00055 * 179.97438 * 12 10 9 15 15 H 1.08999 * 109.47245 * 0.02562 * 14 12 10 16 16 C 1.53002 * 109.47253 * 240.00340 * 14 12 10 17 17 C 1.50702 * 109.47281 * 120.00007 * 14 12 10 18 18 H 1.08002 * 119.99340 * 35.00479 * 17 14 12 19 19 C 1.37870 * 120.00290 * 215.00802 * 17 14 12 20 20 N 1.31511 * 119.99900 * 184.91483 * 19 17 14 21 21 Si 1.86799 * 120.00193 * 4.91177 * 19 17 14 22 22 H 1.48503 * 109.47144 * 84.83490 * 21 19 17 23 23 H 1.48492 * 109.47329 * 204.83811 * 21 19 17 24 24 H 1.48504 * 109.46907 * 324.83769 * 21 19 17 25 25 C 1.38265 * 120.11137 * 0.25228 * 7 6 5 26 26 C 1.38147 * 120.05347 * 359.45512 * 25 7 6 27 27 H 1.08997 * 109.46554 * 299.99838 * 1 2 3 28 28 H 1.08997 * 109.46635 * 59.99762 * 1 2 3 29 29 H 1.08993 * 109.46627 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47204 * 240.00536 * 2 1 3 31 31 H 1.09004 * 109.46953 * 120.00022 * 2 1 3 32 32 H 1.08000 * 120.02321 * 0.02562 * 5 4 3 33 33 H 1.07998 * 119.97617 * 180.02562 * 6 5 4 34 34 H 1.08997 * 109.46875 * 209.99928 * 8 7 6 35 35 H 1.09003 * 109.47108 * 330.00283 * 8 7 6 36 36 H 1.08997 * 109.47395 * 300.00170 * 9 8 7 37 37 H 1.08999 * 109.47225 * 59.99669 * 9 8 7 38 38 H 1.09001 * 109.46754 * 90.00307 * 13 12 10 39 39 H 1.08998 * 109.46356 * 209.99878 * 13 12 10 40 40 H 1.08993 * 109.46890 * 329.99733 * 13 12 10 41 41 H 1.08993 * 109.47536 * 54.97744 * 16 14 12 42 42 H 1.09007 * 109.46849 * 174.97894 * 16 14 12 43 43 H 1.08999 * 109.46578 * 294.97291 * 16 14 12 44 44 H 0.97003 * 119.99865 * 179.97438 * 20 19 17 45 45 H 1.08003 * 119.96927 * 179.70335 * 25 7 6 46 46 H 1.08001 * 120.02394 * 180.25032 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8852 2.8069 0.0011 6 6 5.2550 2.9852 0.0011 7 6 6.0962 1.8878 0.0000 8 6 7.5903 2.0853 -0.0005 9 6 8.0965 2.1512 1.4417 10 6 9.5904 2.3494 1.4412 11 8 10.1911 2.4295 0.3906 12 7 10.2591 2.4365 2.6082 13 6 9.5337 2.3381 3.8772 14 6 11.7114 2.6285 2.6076 15 1 12.0711 2.6777 1.5798 16 6 12.3812 1.4562 3.3272 17 6 12.0486 3.9135 3.3192 18 1 11.4597 4.2319 4.1667 19 6 13.1085 4.6826 2.8882 20 7 13.4631 5.7524 3.5659 21 14 14.0411 4.2052 1.3417 22 1 13.3403 4.7525 0.1522 23 1 15.4178 4.7583 1.4031 24 1 14.1064 2.7250 1.2401 25 6 5.5690 0.6097 -0.0063 26 6 4.1998 0.4260 -0.0003 27 1 -0.3632 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.2285 3.6643 0.0015 33 1 5.6693 3.9826 0.0020 34 1 8.0668 1.2510 -0.5151 35 1 7.8336 3.0156 -0.5138 36 1 7.6199 2.9855 1.9564 37 1 7.8531 1.2210 1.9551 38 1 9.4894 1.2949 4.1903 39 1 10.0504 2.9240 4.6373 40 1 8.5219 2.7220 3.7479 41 1 12.0663 0.5196 2.8672 42 1 13.4642 1.5530 3.2495 43 1 12.0905 1.4609 4.3778 44 1 14.2092 6.2933 3.2629 45 1 6.2282 -0.2458 -0.0120 46 1 3.7885 -0.5726 -0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264010264.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:10 Heat of formation + Delta-G solvation = -82.168620 kcal Electronic energy + Delta-G solvation = -24370.499173 eV Core-core repulsion = 20838.242494 eV Total energy + Delta-G solvation = -3532.256678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.18724 -40.72042 -38.78489 -37.17828 -34.86508 -34.45459 -32.70743 -32.11475 -31.78192 -29.58212 -27.58739 -27.26988 -25.63497 -24.82010 -23.04246 -22.51588 -21.56694 -19.77701 -19.24624 -19.19096 -17.86992 -17.20223 -17.08158 -17.00171 -16.46518 -16.12623 -15.87166 -15.32096 -14.85684 -14.70497 -14.46053 -14.40528 -14.22544 -14.17407 -14.11809 -13.58167 -13.45358 -13.31503 -13.20486 -13.07162 -12.89027 -12.66155 -12.59883 -12.45940 -12.31513 -12.22837 -11.98437 -11.80871 -11.57940 -11.53395 -11.27448 -10.79391 -10.60166 -9.93094 -9.30736 -9.01312 -8.37366 -6.40733 0.41289 0.45264 1.26550 1.32921 1.41073 1.82650 2.26941 2.29328 2.36001 2.81298 3.05124 3.67624 3.84555 3.97443 4.07667 4.09198 4.13273 4.24701 4.28373 4.38536 4.45320 4.47135 4.50022 4.53604 4.66031 4.68718 4.74794 4.74918 4.84920 4.92614 4.95634 4.96330 5.04427 5.15463 5.16402 5.21084 5.24554 5.35507 5.36260 5.43160 5.54691 5.75371 5.84463 5.86506 6.16851 6.49801 6.64801 6.81079 7.24574 7.43387 8.77859 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030658 B = 0.002459 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.078494 B =11383.907961 C =11497.667152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.112 3.888 5 C -0.161 4.161 6 C -0.082 4.082 7 C -0.121 4.121 8 C -0.054 4.054 9 C -0.117 4.117 10 C 0.493 3.507 11 O -0.605 6.605 12 N -0.600 5.600 13 C 0.080 3.920 14 C 0.219 3.781 15 H 0.039 0.961 16 C -0.138 4.138 17 C -0.518 4.518 18 H 0.054 0.946 19 C 0.027 3.973 20 N -0.934 5.934 21 Si 0.927 3.073 22 H -0.285 1.285 23 H -0.277 1.277 24 H -0.252 1.252 25 C -0.078 4.078 26 C -0.207 4.207 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.268 0.732 45 H 0.140 0.860 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.590 -14.557 -4.905 28.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.067 3.933 5 C -0.180 4.180 6 C -0.100 4.100 7 C -0.121 4.121 8 C -0.092 4.092 9 C -0.157 4.157 10 C 0.283 3.717 11 O -0.488 6.488 12 N -0.331 5.331 13 C -0.063 4.063 14 C 0.116 3.884 15 H 0.057 0.943 16 C -0.196 4.196 17 C -0.557 4.557 18 H 0.073 0.927 19 C -0.173 4.173 20 N -0.574 5.574 21 Si 0.752 3.248 22 H -0.211 1.211 23 H -0.203 1.203 24 H -0.176 1.176 25 C -0.096 4.096 26 C -0.225 4.225 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.158 0.842 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -24.305 -14.241 -5.387 28.680 hybrid contribution 1.000 0.364 -0.528 1.188 sum -23.305 -13.876 -5.915 27.761 Atomic orbital electron populations 1.21808 0.91636 1.04131 1.03117 1.23052 0.96805 0.80852 1.02262 1.86049 1.18903 1.31252 1.88723 1.19171 0.82654 0.94526 0.96936 1.20580 0.95289 0.95388 1.06748 1.21048 0.92153 0.99347 0.97424 1.19777 0.94789 0.93722 1.03805 1.20151 0.90723 1.03012 0.95304 1.21656 0.89001 1.05659 0.99368 1.21497 0.91478 0.75749 0.82967 1.90605 1.71569 1.53855 1.32776 1.48318 1.08569 1.69352 1.06840 1.21849 0.96963 1.02268 0.85194 1.19097 0.78597 0.94104 0.96576 0.94325 1.22056 0.99924 0.96701 1.00942 1.21377 1.13930 1.05589 1.14773 0.92750 1.25634 0.97945 0.94635 0.99045 1.69989 1.29227 1.17409 1.40740 0.86062 0.78143 0.79958 0.80607 1.21131 1.20253 1.17580 1.21073 0.94683 0.96944 0.96912 1.21427 0.93996 0.98706 1.08371 0.91909 0.91960 0.88227 0.91204 0.91090 0.84643 0.84678 0.91067 0.92037 0.87693 0.86546 0.90755 0.92152 0.89400 0.93365 0.93416 0.91954 0.92300 0.84211 0.83515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 71.99 0.74 -0.51 16 2 C 0.04 0.52 5.46 71.99 0.39 0.92 16 3 O -0.33 -6.38 10.14 -92.39 -0.94 -7.32 16 4 C 0.11 2.28 6.69 22.51 0.15 2.43 16 5 C -0.16 -3.36 9.99 22.36 0.22 -3.13 16 6 C -0.08 -1.74 9.69 22.25 0.22 -1.53 16 7 C -0.12 -2.63 5.14 -19.85 -0.10 -2.74 16 8 C -0.05 -1.39 4.63 29.85 0.14 -1.25 16 9 C -0.12 -3.07 4.23 29.85 0.13 -2.95 16 10 C 0.49 19.10 7.67 87.66 0.67 19.77 16 11 O -0.61 -28.86 15.31 -3.03 -0.05 -28.91 16 12 N -0.60 -24.01 2.75 -826.80 -2.28 -26.29 16 13 C 0.08 2.39 9.39 127.77 1.20 3.59 16 14 C 0.22 10.47 2.30 44.25 0.10 10.57 16 15 H 0.04 2.06 4.05 -2.39 -0.01 2.05 16 16 C -0.14 -5.60 9.10 71.98 0.65 -4.94 16 17 C -0.52 -28.84 8.72 25.60 0.22 -28.62 16 18 H 0.05 3.22 6.82 -2.91 -0.02 3.20 16 19 C 0.03 1.56 5.47 84.65 0.46 2.03 16 20 N -0.93 -57.46 13.96 21.44 0.30 -57.17 16 21 Si 0.93 46.83 26.99 68.60 1.85 48.68 16 22 H -0.28 -14.93 7.11 99.48 0.71 -14.23 16 23 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.25 -12.09 6.82 99.48 0.68 -11.41 16 25 C -0.08 -1.48 9.69 22.25 0.22 -1.26 16 26 C -0.21 -3.65 9.04 22.37 0.20 -3.45 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 31 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.07 1.91 8.04 -2.39 -0.02 1.89 16 35 H 0.06 1.79 8.04 -2.39 -0.02 1.77 16 36 H 0.10 2.47 7.40 -2.39 -0.02 2.46 16 37 H 0.12 2.39 8.11 -2.39 -0.02 2.37 16 38 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.06 2.08 6.56 -2.39 -0.02 2.06 16 40 H 0.09 2.09 6.44 -2.39 -0.02 2.08 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.06 2.34 7.84 -2.39 -0.02 2.32 16 44 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 46 H 0.15 1.84 6.30 -2.91 -0.02 1.83 16 Total: -1.00 -73.51 373.94 5.44 -68.07 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.93 Total: 14.01 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 5.62 Total: -11.08 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -1.98 Total: -83.45 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.98 Total: -36.23 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.85 Total: 48.68 kcal Total: -73.51 5.44 -68.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264010264.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.097 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds