Wall clock time and date at job start Tue Mar 31 2020 08:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46935 * 2 1 4 4 C 1.46494 * 120.00166 * 269.99699 * 3 2 1 5 5 C 1.50697 * 109.47603 * 270.00282 * 4 3 2 6 6 H 1.07997 * 119.99802 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00202 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00031 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00038 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46825 * 90.00210 * 9 7 5 11 11 H 1.48498 * 109.47069 * 209.99867 * 9 7 5 12 12 H 1.48498 * 109.47246 * 330.00162 * 9 7 5 13 13 C 1.34778 * 120.00002 * 90.00251 * 3 2 1 14 14 O 1.21282 * 120.00237 * 179.97438 * 13 3 2 15 15 C 1.50707 * 120.00105 * 359.97438 * 13 3 2 16 16 C 1.52991 * 109.47416 * 180.02562 * 15 13 3 17 17 O 1.42901 * 109.47372 * 180.02562 * 16 15 13 18 18 C 1.35906 * 117.00155 * 180.02562 * 17 16 15 19 19 C 1.38755 * 120.05296 * 359.97438 * 18 17 16 20 20 C 1.38125 * 119.93999 * 180.27973 * 19 18 17 21 21 C 1.38289 * 120.05202 * 359.48967 * 20 19 18 22 22 C 1.50706 * 119.93791 * 180.25765 * 21 20 19 23 23 C 1.38237 * 120.11494 * 0.50894 * 21 20 19 24 24 C 1.50702 * 119.97414 * 179.72543 * 23 21 20 25 25 C 1.38167 * 120.05858 * 359.74537 * 23 21 20 26 26 H 1.08993 * 109.47053 * 60.00075 * 1 2 3 27 27 H 1.09003 * 109.46792 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46948 * 299.99452 * 1 2 3 29 29 H 1.09002 * 109.47404 * 239.99927 * 2 1 3 30 30 H 1.09006 * 109.47244 * 120.00058 * 2 1 3 31 31 H 1.08999 * 109.46922 * 30.00861 * 4 3 2 32 32 H 1.09006 * 109.47191 * 149.99920 * 4 3 2 33 33 H 0.97006 * 120.00142 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47146 * 59.99567 * 15 13 3 35 35 H 1.09003 * 109.46561 * 299.99947 * 15 13 3 36 36 H 1.09003 * 109.47447 * 59.99591 * 16 15 13 37 37 H 1.09006 * 109.46818 * 299.99919 * 16 15 13 38 38 H 1.08002 * 120.02789 * 359.97438 * 19 18 17 39 39 H 1.07995 * 119.96669 * 179.72334 * 20 19 18 40 40 H 1.08995 * 109.47080 * 270.24804 * 22 21 20 41 41 H 1.08993 * 109.47243 * 30.25404 * 22 21 20 42 42 H 1.09001 * 109.46983 * 150.25353 * 22 21 20 43 43 H 1.08996 * 109.47216 * 270.02415 * 24 23 21 44 44 H 1.09001 * 109.47177 * 30.02395 * 24 23 21 45 45 H 1.09001 * 109.47352 * 150.01918 * 24 23 21 46 46 H 1.07993 * 120.03379 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3897 -2.8779 8 7 3.3490 3.1258 -3.6180 9 14 5.9135 2.0968 -3.4168 10 1 5.9775 0.8754 -4.2592 11 1 6.3920 3.2640 -4.2003 12 1 6.7736 1.9181 -2.2195 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9913 1.3063 2.4724 16 6 2.3222 2.2438 3.6353 17 8 2.0842 1.5701 4.8728 18 6 2.3300 2.2683 6.0127 19 6 2.7914 3.5749 5.9413 20 6 3.0460 4.2803 7.1012 21 6 2.8313 3.6890 8.3327 22 6 3.1045 4.4630 9.5966 23 6 2.3716 2.3874 8.4064 24 6 2.1447 1.7440 9.7501 25 6 2.1204 1.6756 7.2491 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5816 1.6878 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 3.6750 3.5164 -4.4440 34 1 2.6211 0.4185 2.5303 35 1 0.9432 1.0126 2.5299 36 1 1.6921 3.1313 3.5772 37 1 3.3703 2.5379 3.5779 38 1 2.9561 4.0382 4.9797 39 1 3.4094 5.2958 7.0462 40 1 4.1392 4.3074 9.9015 41 1 2.9344 5.5245 9.4165 42 1 2.4372 4.1170 10.3860 43 1 3.0590 1.2470 10.0741 44 1 1.8694 2.5081 10.4770 45 1 1.3413 1.0115 9.6712 46 1 1.7617 0.6586 7.3071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264015082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:01 Heat of formation + Delta-G solvation = -66.747546 kcal Electronic energy + Delta-G solvation = -24332.526341 eV Core-core repulsion = 20800.938371 eV Total energy + Delta-G solvation = -3531.587970 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.33246 -39.20110 -37.96548 -35.37767 -33.08190 -32.79480 -32.37181 -31.16141 -30.09131 -27.88633 -27.08368 -26.08030 -24.36870 -23.03675 -22.46873 -21.90379 -20.44413 -18.49387 -17.72634 -16.60107 -16.43196 -16.17944 -16.01584 -15.39186 -15.32457 -14.65900 -14.35909 -14.32283 -14.11698 -13.71117 -13.40837 -13.31743 -13.16376 -13.02090 -12.73775 -12.50206 -12.17524 -12.14884 -12.01352 -11.78864 -11.55832 -11.42537 -11.37763 -11.17855 -10.92737 -10.80517 -10.74879 -10.55300 -10.47161 -10.15183 -9.66155 -9.01449 -8.89874 -8.45434 -8.08381 -7.71889 -6.06327 -4.11145 1.21868 1.33556 3.03002 3.28707 3.32372 3.36032 3.41262 3.61586 4.02336 4.43560 4.62311 4.66826 4.87200 4.90790 4.94853 5.05658 5.07322 5.17860 5.24131 5.28411 5.28816 5.30905 5.42911 5.49079 5.55906 5.60736 5.62131 5.63202 5.72900 5.78240 5.89561 5.92979 5.97088 6.05667 6.21887 6.24762 6.33350 6.47913 6.52481 6.71963 7.02574 7.40693 7.41271 7.50370 7.89815 8.20976 8.35857 8.85967 9.02079 9.53989 11.01774 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002618 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.256004 B =10692.968473 C =11541.968589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.594 5.594 4 C 0.246 3.754 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.511 3.489 14 O -0.544 6.544 15 C -0.140 4.140 16 C 0.076 3.924 17 O -0.319 6.319 18 C 0.136 3.864 19 C -0.208 4.208 20 C -0.076 4.076 21 C -0.132 4.132 22 C -0.110 4.110 23 C -0.052 4.052 24 C -0.116 4.116 25 C -0.154 4.154 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 -4.258 23.202 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.325 5.325 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.297 3.703 14 O -0.423 6.423 15 C -0.180 4.180 16 C 0.001 3.999 17 O -0.233 6.233 18 C 0.090 3.910 19 C -0.227 4.227 20 C -0.094 4.094 21 C -0.133 4.133 22 C -0.167 4.167 23 C -0.052 4.052 24 C -0.172 4.172 25 C -0.172 4.172 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.713 -3.741 22.956 23.732 hybrid contribution 1.036 -0.029 -0.736 1.271 sum -3.677 -3.770 22.221 22.836 Atomic orbital electron populations 1.22220 0.96704 1.01514 1.02339 1.21457 0.93592 0.84055 1.02860 1.48234 1.63355 1.13345 1.07607 1.19293 0.96344 0.93659 0.78023 1.21424 0.96892 1.31957 1.06265 0.92466 1.24939 0.97895 0.94898 0.96399 1.69934 1.35717 1.33389 1.14324 0.86495 0.84633 0.77687 0.78599 1.20623 1.21074 1.19891 1.19949 0.78706 0.86798 0.84880 1.90683 1.46150 1.18121 1.87316 1.21567 1.04426 0.99963 0.92035 1.22496 1.02125 0.95169 0.80107 1.85966 1.82581 1.41858 1.12861 1.18963 0.95016 0.90582 0.86421 1.21393 1.06490 0.94710 1.00075 1.20824 0.97785 0.99498 0.91278 1.19632 1.03780 0.94624 0.95223 1.20765 1.01741 0.99344 0.94814 1.19486 0.97626 0.93403 0.94729 1.20857 1.02192 1.00638 0.93556 1.20240 1.06929 1.00921 0.89147 0.92030 0.92084 0.93017 0.89850 0.91530 0.94902 0.93850 0.92699 0.88378 0.88494 0.91107 0.90992 0.84939 0.85845 0.91573 0.91881 0.91440 0.90995 0.91022 0.91489 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 10.24 37.16 0.38 -1.86 16 2 C 0.10 1.64 5.93 -4.04 -0.02 1.62 16 3 N -0.59 -12.35 2.46 -175.06 -0.43 -12.78 16 4 C 0.25 6.37 5.16 -5.20 -0.03 6.34 16 5 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.51 10.39 7.67 -10.98 -0.08 10.30 16 14 O -0.54 -13.37 15.56 5.56 0.09 -13.28 16 15 C -0.14 -2.09 4.62 -27.88 -0.13 -2.21 16 16 C 0.08 1.13 4.03 37.15 0.15 1.28 16 17 O -0.32 -4.56 10.14 -19.44 -0.20 -4.75 16 18 C 0.14 1.84 6.69 -39.22 -0.26 1.58 16 19 C -0.21 -2.71 9.04 -39.43 -0.36 -3.06 16 20 C -0.08 -0.86 9.69 -39.60 -0.38 -1.24 16 21 C -0.13 -1.37 5.88 -104.60 -0.62 -1.98 16 22 C -0.11 -0.81 9.60 36.01 0.35 -0.47 16 23 C -0.05 -0.54 5.88 -104.65 -0.62 -1.15 16 24 C -0.12 -0.83 9.60 36.01 0.35 -0.48 16 25 C -0.15 -1.81 9.64 -39.43 -0.38 -2.19 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 29 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.07 0.87 6.44 -51.93 -0.33 0.54 16 31 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.10 1.32 7.40 -51.93 -0.38 0.94 16 35 H 0.10 1.25 7.18 -51.93 -0.37 0.88 16 36 H 0.07 1.07 7.62 -51.93 -0.40 0.67 16 37 H 0.07 1.13 7.62 -51.93 -0.40 0.73 16 38 H 0.13 1.73 6.30 -52.49 -0.33 1.40 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 42 H 0.07 0.41 5.94 -51.93 -0.31 0.11 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.42 5.94 -51.93 -0.31 0.12 16 45 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 46 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -32.98 377.02 -8.57 -41.55 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.35 Total: -0.36 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.08 Total: -7.08 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.31 Total: -38.58 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.11 Total: -18.04 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.98 -8.57 -41.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264015082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.197 kcal (2) G-P(sol) polarization free energy of solvation -32.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds