Wall clock time and date at job start Tue Mar 31 2020 08:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46935 * 2 1 4 4 C 1.46494 * 120.00166 * 269.99699 * 3 2 1 5 5 C 1.50697 * 109.47603 * 270.00282 * 4 3 2 6 6 H 1.07997 * 119.99802 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00202 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00031 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00038 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46825 * 90.00210 * 9 7 5 11 11 H 1.48498 * 109.47069 * 209.99867 * 9 7 5 12 12 H 1.48498 * 109.47246 * 330.00162 * 9 7 5 13 13 C 1.34778 * 120.00002 * 90.00251 * 3 2 1 14 14 O 1.21282 * 120.00237 * 179.97438 * 13 3 2 15 15 C 1.50707 * 120.00105 * 359.97438 * 13 3 2 16 16 C 1.52991 * 109.47416 * 180.02562 * 15 13 3 17 17 O 1.42901 * 109.47372 * 180.02562 * 16 15 13 18 18 C 1.35906 * 117.00155 * 180.02562 * 17 16 15 19 19 C 1.38755 * 120.05296 * 359.97438 * 18 17 16 20 20 C 1.38125 * 119.93999 * 180.27973 * 19 18 17 21 21 C 1.38289 * 120.05202 * 359.48967 * 20 19 18 22 22 C 1.50706 * 119.93791 * 180.25765 * 21 20 19 23 23 C 1.38237 * 120.11494 * 0.50894 * 21 20 19 24 24 C 1.50702 * 119.97414 * 179.72543 * 23 21 20 25 25 C 1.38167 * 120.05858 * 359.74537 * 23 21 20 26 26 H 1.08993 * 109.47053 * 60.00075 * 1 2 3 27 27 H 1.09003 * 109.46792 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46948 * 299.99452 * 1 2 3 29 29 H 1.09002 * 109.47404 * 239.99927 * 2 1 3 30 30 H 1.09006 * 109.47244 * 120.00058 * 2 1 3 31 31 H 1.08999 * 109.46922 * 30.00861 * 4 3 2 32 32 H 1.09006 * 109.47191 * 149.99920 * 4 3 2 33 33 H 0.97006 * 120.00142 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.47146 * 59.99567 * 15 13 3 35 35 H 1.09003 * 109.46561 * 299.99947 * 15 13 3 36 36 H 1.09003 * 109.47447 * 59.99591 * 16 15 13 37 37 H 1.09006 * 109.46818 * 299.99919 * 16 15 13 38 38 H 1.08002 * 120.02789 * 359.97438 * 19 18 17 39 39 H 1.07995 * 119.96669 * 179.72334 * 20 19 18 40 40 H 1.08995 * 109.47080 * 270.24804 * 22 21 20 41 41 H 1.08993 * 109.47243 * 30.25404 * 22 21 20 42 42 H 1.09001 * 109.46983 * 150.25353 * 22 21 20 43 43 H 1.08996 * 109.47216 * 270.02415 * 24 23 21 44 44 H 1.09001 * 109.47177 * 30.02395 * 24 23 21 45 45 H 1.09001 * 109.47352 * 150.01918 * 24 23 21 46 46 H 1.07993 * 120.03379 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3897 -2.8779 8 7 3.3490 3.1258 -3.6180 9 14 5.9135 2.0968 -3.4168 10 1 5.9775 0.8754 -4.2592 11 1 6.3920 3.2640 -4.2003 12 1 6.7736 1.9181 -2.2195 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9913 1.3063 2.4724 16 6 2.3222 2.2438 3.6353 17 8 2.0842 1.5701 4.8728 18 6 2.3300 2.2683 6.0127 19 6 2.7914 3.5749 5.9413 20 6 3.0460 4.2803 7.1012 21 6 2.8313 3.6890 8.3327 22 6 3.1045 4.4630 9.5966 23 6 2.3716 2.3874 8.4064 24 6 2.1447 1.7440 9.7501 25 6 2.1204 1.6756 7.2491 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.5816 1.6878 -2.0283 32 1 2.0955 3.1411 -1.1383 33 1 3.6750 3.5164 -4.4440 34 1 2.6211 0.4185 2.5303 35 1 0.9432 1.0126 2.5299 36 1 1.6921 3.1313 3.5772 37 1 3.3703 2.5379 3.5779 38 1 2.9561 4.0382 4.9797 39 1 3.4094 5.2958 7.0462 40 1 4.1392 4.3074 9.9015 41 1 2.9344 5.5245 9.4165 42 1 2.4372 4.1170 10.3860 43 1 3.0590 1.2470 10.0741 44 1 1.8694 2.5081 10.4770 45 1 1.3413 1.0115 9.6712 46 1 1.7617 0.6586 7.3071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264015082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:49:59 Heat of formation + Delta-G solvation = -85.323224 kcal Electronic energy + Delta-G solvation = -24333.331843 eV Core-core repulsion = 20800.938371 eV Total energy + Delta-G solvation = -3532.393472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -41.35279 -40.71847 -38.96179 -37.03923 -34.98544 -33.84716 -33.33753 -32.30301 -31.52897 -29.25096 -28.36564 -26.86576 -25.89424 -24.55410 -23.76269 -22.97967 -21.39502 -19.96988 -18.92313 -18.59783 -17.80445 -17.46863 -17.18968 -16.98599 -16.24477 -16.19729 -15.92295 -15.23672 -15.04486 -14.71691 -14.65246 -14.51256 -14.42445 -14.14390 -13.75114 -13.55981 -13.52892 -13.27901 -13.25261 -13.06457 -12.79187 -12.73731 -12.64747 -12.52960 -12.39506 -12.16898 -12.07355 -11.88247 -11.73774 -11.67695 -11.57114 -10.71940 -10.65737 -9.75472 -9.49156 -8.99729 -8.24319 -6.39083 0.34110 0.43976 1.35133 1.38118 1.48275 1.73333 1.82993 2.35060 2.59924 2.73499 3.05397 3.57991 3.79760 3.86662 3.87771 3.95565 4.06855 4.12277 4.23790 4.35036 4.35655 4.40168 4.45038 4.58725 4.68040 4.72003 4.76664 4.82533 4.84549 4.95166 4.96852 4.98411 5.03306 5.04719 5.20409 5.21991 5.23868 5.39214 5.40658 5.45428 5.55645 5.72291 5.82182 5.88758 6.04134 6.38136 6.66309 6.74463 7.24573 7.40581 8.82891 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.002618 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.256004 B =10692.968473 C =11541.968589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.261 3.739 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.968 3.032 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.502 3.498 14 O -0.598 6.598 15 C -0.122 4.122 16 C 0.085 3.915 17 O -0.320 6.320 18 C 0.108 3.892 19 C -0.227 4.227 20 C -0.087 4.087 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.055 4.055 24 C -0.115 4.115 25 C -0.160 4.160 26 H 0.038 0.962 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.024 0.976 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 -6.230 25.749 26.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.198 1.198 13 C 0.291 3.709 14 O -0.480 6.480 15 C -0.161 4.161 16 C 0.010 3.990 17 O -0.234 6.234 18 C 0.063 3.937 19 C -0.246 4.246 20 C -0.105 4.105 21 C -0.134 4.134 22 C -0.166 4.166 23 C -0.055 4.055 24 C -0.171 4.171 25 C -0.179 4.179 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.042 0.958 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.137 0.863 39 H 0.155 0.845 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.094 0.906 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.531 -5.763 25.526 26.558 hybrid contribution 0.937 0.615 -1.435 1.821 sum -3.594 -5.148 24.092 24.896 Atomic orbital electron populations 1.22160 0.94511 1.03613 1.01716 1.21809 0.95383 0.81120 1.04195 1.48256 1.63441 1.15229 1.06089 1.18733 0.95390 0.91569 0.80322 1.21701 0.97850 1.32050 1.06535 0.92827 1.25869 1.02440 0.94461 0.96451 1.70054 1.37803 1.34163 1.14794 0.85410 0.78936 0.78223 0.78210 1.18734 1.20650 1.19799 1.20875 0.77327 0.86352 0.86368 1.90653 1.48448 1.20703 1.88210 1.21436 1.06692 0.99638 0.88339 1.22249 1.00954 0.94970 0.80869 1.85916 1.83027 1.41769 1.12691 1.19251 0.96721 0.91066 0.86693 1.21432 1.07752 0.95137 1.00303 1.21088 0.97858 1.00212 0.91341 1.20058 1.02413 0.94968 0.95954 1.20837 1.02732 0.99351 0.93639 1.19930 0.96344 0.93412 0.95794 1.20938 1.03110 1.01215 0.91806 1.20520 1.06815 1.01678 0.88872 0.94262 0.88536 0.92075 0.90783 0.87906 0.95806 0.98472 0.92388 0.85941 0.85514 0.92175 0.92626 0.86284 0.84494 0.90579 0.91234 0.89739 0.89854 0.89449 0.90581 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.22 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.60 -25.35 2.46 -826.15 -2.03 -27.38 16 4 C 0.26 14.19 5.16 85.63 0.44 14.64 16 5 C -0.54 -31.51 9.39 25.60 0.24 -31.27 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 9 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 10 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 C 0.50 20.84 7.67 87.66 0.67 21.51 16 14 O -0.60 -31.01 15.56 -3.04 -0.05 -31.06 16 15 C -0.12 -3.48 4.62 29.85 0.14 -3.34 16 16 C 0.09 2.58 4.03 71.98 0.29 2.87 16 17 O -0.32 -9.04 10.14 -92.49 -0.94 -9.97 16 18 C 0.11 2.92 6.69 22.51 0.15 3.07 16 19 C -0.23 -6.14 9.04 22.37 0.20 -5.94 16 20 C -0.09 -1.95 9.69 22.25 0.22 -1.74 16 21 C -0.13 -2.54 5.88 -19.85 -0.12 -2.65 16 22 C -0.11 -1.31 9.60 71.24 0.68 -0.63 16 23 C -0.05 -1.02 5.88 -19.88 -0.12 -1.14 16 24 C -0.11 -1.26 9.60 71.24 0.68 -0.58 16 25 C -0.16 -3.59 9.64 22.37 0.22 -3.38 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.06 1.38 7.22 -2.39 -0.02 1.36 16 29 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 30 H 0.10 2.35 6.44 -2.38 -0.02 2.34 16 31 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 32 H 0.00 -0.18 7.42 -2.38 -0.02 -0.20 16 33 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 34 H 0.12 2.97 7.40 -2.39 -0.02 2.95 16 35 H 0.13 2.92 7.18 -2.39 -0.02 2.90 16 36 H 0.06 1.92 7.62 -2.39 -0.02 1.90 16 37 H 0.06 1.84 7.62 -2.38 -0.02 1.82 16 38 H 0.12 3.41 6.30 -2.91 -0.02 3.39 16 39 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 42 H 0.08 0.74 5.94 -2.39 -0.01 0.72 16 43 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.09 0.70 5.94 -2.39 -0.01 0.69 16 45 H 0.08 0.72 8.08 -2.39 -0.02 0.71 16 46 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -75.49 377.02 5.67 -69.82 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.96 Total: 15.15 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.41 Total: -7.51 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.74 Total: -83.69 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -0.98 Total: -41.03 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -75.49 5.67 -69.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264015082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.502 kcal (2) G-P(sol) polarization free energy of solvation -75.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds