Wall clock time and date at job start Tue Mar 31 2020 08:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46650 * 2 1 4 4 C 1.46499 * 120.00355 * 278.32038 * 3 2 1 5 5 C 1.50692 * 109.47203 * 270.00527 * 4 3 2 6 6 H 1.07997 * 120.00262 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99924 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00042 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47288 * 59.99685 * 9 7 5 11 11 H 1.48504 * 109.47088 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46778 * 299.99582 * 9 7 5 13 13 C 1.34781 * 119.99876 * 98.32549 * 3 2 1 14 14 O 1.21546 * 120.00003 * 186.35051 * 13 3 2 15 15 C 1.47847 * 119.99708 * 6.35259 * 13 3 2 16 16 C 1.39581 * 120.14318 * 150.54449 * 15 13 3 17 17 C 1.37960 * 119.85160 * 180.02562 * 16 15 13 18 18 C 1.38358 * 120.14677 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.85296 * 179.97438 * 18 17 16 20 20 O 1.42904 * 109.46659 * 90.00476 * 19 18 17 21 21 C 1.42902 * 113.99652 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.47229 * 90.00108 * 21 20 19 23 23 C 1.53001 * 109.46860 * 209.99947 * 21 20 19 24 24 C 1.38366 * 120.29292 * 0.23970 * 18 17 16 25 25 C 1.37957 * 120.13995 * 359.48506 * 24 18 17 26 26 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47473 * 299.99243 * 1 2 3 28 28 H 1.09002 * 109.47295 * 59.99957 * 1 2 3 29 29 H 1.09004 * 109.47150 * 240.00508 * 2 1 3 30 30 H 1.09002 * 109.47295 * 120.00043 * 2 1 3 31 31 H 1.08999 * 109.46473 * 30.00532 * 4 3 2 32 32 H 1.08993 * 109.46974 * 150.00095 * 4 3 2 33 33 H 0.97003 * 120.00178 * 179.97438 * 8 7 5 34 34 H 1.07998 * 120.07493 * 359.97438 * 16 15 13 35 35 H 1.07997 * 119.92592 * 179.97438 * 17 16 15 36 36 H 1.08996 * 109.47065 * 330.00842 * 19 18 17 37 37 H 1.09001 * 109.46879 * 210.00217 * 19 18 17 38 38 H 1.09007 * 109.47100 * 329.99604 * 21 20 19 39 39 H 1.09005 * 109.46932 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.47179 * 299.99577 * 22 21 20 41 41 H 1.08999 * 109.47157 * 59.99746 * 22 21 20 42 42 H 1.09002 * 109.47166 * 60.00293 * 23 21 20 43 43 H 1.09004 * 109.47444 * 179.97438 * 23 21 20 44 44 H 1.08999 * 109.47159 * 300.00030 * 23 21 20 45 45 H 1.07995 * 119.92516 * 179.74103 * 24 18 17 46 46 H 1.08000 * 120.06929 * 180.25555 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.0892 2.1332 -1.2553 5 6 3.4390 1.9224 -1.8914 6 1 4.1709 1.2918 -1.4087 7 6 3.7399 2.5355 -3.0892 8 7 2.8488 3.3038 -3.6768 9 14 5.4128 2.2736 -3.8781 10 1 5.6083 0.8280 -4.1559 11 1 5.4848 3.0359 -5.1505 12 1 6.4750 2.7485 -2.9552 13 6 2.4021 1.9603 1.1549 14 8 2.6972 3.1393 1.1750 15 6 2.4644 1.1614 2.3974 16 6 3.3789 1.4925 3.3986 17 6 3.4323 0.7426 4.5553 18 6 2.5823 -0.3360 4.7239 19 6 2.6466 -1.1511 5.9899 20 8 1.7519 -0.5989 6.9577 21 6 1.7365 -1.3012 8.2022 22 6 2.7878 -0.7025 9.1387 23 6 0.3525 -1.1748 8.8419 24 6 1.6772 -0.6730 3.7331 25 6 1.6097 0.0721 2.5740 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8900 31 1 1.3099 1.7839 -1.9325 32 1 1.9451 3.1942 -1.0519 33 1 3.0606 3.7354 -4.5193 34 1 4.0438 2.3335 3.2677 35 1 4.1396 0.9975 5.3305 36 1 3.6632 -1.1326 6.3826 37 1 2.3589 -2.1801 5.7744 38 1 1.9617 -2.3535 8.0284 39 1 2.7764 -1.2385 10.0878 40 1 3.7739 -0.7925 8.6830 41 1 2.5626 0.3497 9.3125 42 1 -0.3966 -1.6014 8.1747 43 1 0.3405 -1.7108 9.7910 44 1 0.1272 -0.1226 9.0157 45 1 1.0194 -1.5186 3.8691 46 1 0.9000 -0.1894 1.8031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264016155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:26 Heat of formation + Delta-G solvation = -37.565531 kcal Electronic energy + Delta-G solvation = -24761.368996 eV Core-core repulsion = 21231.046452 eV Total energy + Delta-G solvation = -3530.322543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.18423 -38.84231 -37.66694 -35.59756 -33.54658 -32.85162 -31.36254 -31.03901 -30.02223 -27.73315 -27.45691 -26.04417 -23.31506 -23.04498 -22.45159 -21.62206 -21.34490 -19.02345 -17.16598 -16.82076 -16.51380 -16.37806 -15.94044 -15.29410 -14.96891 -14.67437 -14.56243 -14.06078 -13.98688 -13.72948 -13.47929 -13.04974 -12.91499 -12.74650 -12.52989 -12.49194 -12.34047 -12.11301 -11.98369 -11.76669 -11.65214 -11.24050 -11.18099 -11.00662 -10.93049 -10.89533 -10.61163 -10.44154 -10.11969 -9.85080 -9.65773 -9.04240 -8.81376 -8.60843 -8.42484 -7.66418 -6.03862 -4.08911 1.01632 1.46220 3.15744 3.32296 3.36569 3.39545 3.65445 3.87540 4.16934 4.44872 4.49055 4.63989 4.76437 4.76476 4.86170 4.95895 5.01181 5.11916 5.17130 5.24940 5.29271 5.30457 5.42550 5.46971 5.49603 5.52989 5.57621 5.65592 5.74923 5.83622 5.87324 5.90455 5.98668 6.07618 6.23783 6.34857 6.50177 6.53556 6.56580 6.94104 6.98810 7.10512 7.45976 7.53924 7.92613 8.23585 8.40044 8.88922 9.06586 9.56031 11.04132 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026747 B = 0.002771 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.585025 B =10100.754204 C =10545.574942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.074 3.926 3 N -0.587 5.587 4 C 0.245 3.755 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.545 3.455 14 O -0.538 6.538 15 C -0.109 4.109 16 C -0.070 4.070 17 C -0.107 4.107 18 C -0.083 4.083 19 C 0.105 3.895 20 O -0.375 6.375 21 C 0.079 3.921 22 C -0.176 4.176 23 C -0.150 4.150 24 C -0.109 4.109 25 C -0.125 4.125 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.034 0.966 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.134 0.866 35 H 0.125 0.875 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.125 0.875 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 -13.783 21.751 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.050 4.050 3 N -0.317 5.317 4 C 0.126 3.874 5 C -0.567 4.567 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.332 3.668 14 O -0.416 6.416 15 C -0.112 4.112 16 C -0.089 4.089 17 C -0.126 4.126 18 C -0.083 4.083 19 C 0.028 3.972 20 O -0.294 6.294 21 C 0.021 3.979 22 C -0.234 4.234 23 C -0.207 4.207 24 C -0.128 4.128 25 C -0.142 4.142 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.143 0.857 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.809 -12.869 21.504 25.348 hybrid contribution 1.144 -0.363 -0.516 1.306 sum -2.665 -13.232 20.988 24.954 Atomic orbital electron populations 1.22293 0.96597 1.01814 1.02862 1.22266 0.93710 0.84905 1.04100 1.48134 1.61632 1.13245 1.08739 1.19309 0.97073 0.92762 0.78232 1.21399 0.99774 1.29802 1.05745 0.92490 1.24936 0.97299 0.94893 0.96944 1.69927 1.34409 1.31047 1.17915 0.86553 0.84210 0.78150 0.78476 1.20240 1.21152 1.20166 1.18199 0.78446 0.87007 0.83159 1.90741 1.49520 1.15660 1.85689 1.20340 0.98183 0.96712 0.95948 1.21249 0.97148 0.98574 0.91900 1.20940 0.99462 0.94760 0.97396 1.19664 0.97191 0.96896 0.94570 1.21352 0.93632 0.95411 0.86764 1.88053 1.63371 1.55086 1.22924 1.22092 0.96072 0.95270 0.84439 1.22310 0.99177 1.02345 0.99519 1.21862 0.95552 1.03074 1.00230 1.20964 0.98089 1.00425 0.93274 1.22477 0.99785 0.93985 0.97999 0.91740 0.92371 0.91292 0.90232 0.88737 0.94802 0.93604 0.92640 0.84850 0.85741 0.92527 0.92448 0.92292 0.91745 0.92475 0.91653 0.91950 0.91357 0.91705 0.85735 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 9.13 37.16 0.34 -2.09 16 2 C 0.07 1.22 5.58 -4.04 -0.02 1.20 16 3 N -0.59 -12.87 2.46 -176.18 -0.43 -13.31 16 4 C 0.25 6.52 5.22 -5.20 -0.03 6.49 16 5 C -0.53 -15.15 9.39 -34.44 -0.32 -15.48 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.54 12.18 7.47 -12.33 -0.09 12.09 16 14 O -0.54 -14.25 16.25 5.33 0.09 -14.16 16 15 C -0.11 -1.92 5.59 -104.97 -0.59 -2.51 16 16 C -0.07 -1.12 9.60 -39.18 -0.38 -1.50 16 17 C -0.11 -1.41 9.68 -39.64 -0.38 -1.79 16 18 C -0.08 -1.00 5.52 -104.53 -0.58 -1.58 16 19 C 0.10 1.00 5.87 36.00 0.21 1.21 16 20 O -0.37 -4.03 9.97 -35.23 -0.35 -4.38 16 21 C 0.08 0.61 3.34 -26.73 -0.09 0.52 16 22 C -0.18 -1.20 9.53 37.16 0.35 -0.85 16 23 C -0.15 -1.02 9.56 37.16 0.36 -0.66 16 24 C -0.11 -1.33 9.68 -39.64 -0.38 -1.71 16 25 C -0.12 -1.78 7.49 -39.19 -0.29 -2.07 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.78 7.07 -51.93 -0.37 0.41 16 28 H 0.07 1.05 7.94 -51.93 -0.41 0.64 16 29 H 0.08 1.36 8.13 -51.93 -0.42 0.93 16 30 H 0.10 1.37 4.02 -52.12 -0.21 1.16 16 31 H 0.03 0.90 7.87 -51.93 -0.41 0.49 16 32 H 0.05 1.38 7.34 -51.93 -0.38 1.00 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.13 2.19 7.92 -52.49 -0.42 1.78 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.06 0.47 7.81 -51.93 -0.41 0.07 16 37 H 0.06 0.46 8.02 -51.93 -0.42 0.04 16 38 H 0.06 0.38 7.79 -51.93 -0.40 -0.02 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.16 2.10 2.52 -52.49 -0.13 1.97 16 LS Contribution 376.30 15.07 5.67 5.67 Total: -1.00 -34.01 376.30 -8.62 -42.63 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.31 Total: -0.36 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -1.99 Total: -7.06 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.30 Total: -39.32 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.26 Total: -18.55 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.01 -8.62 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264016155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.060 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds