Wall clock time and date at job start Tue Mar 31 2020 08:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46860 * 2 1 4 4 C 1.46491 * 120.00006 * 269.99772 * 3 2 1 5 5 C 1.50698 * 109.47597 * 270.00091 * 4 3 2 6 6 H 1.08008 * 119.99424 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00375 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99899 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00004 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46889 * 90.00102 * 9 7 5 11 11 H 1.48496 * 109.46779 * 209.99910 * 9 7 5 12 12 H 1.48496 * 109.46877 * 329.99827 * 9 7 5 13 13 C 1.34780 * 119.99664 * 89.99794 * 3 2 1 14 14 O 1.21286 * 119.99252 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00089 * 0.02562 * 13 3 2 16 16 C 1.53002 * 109.46832 * 179.97438 * 15 13 3 17 17 O 1.42904 * 109.47152 * 179.97438 * 16 15 13 18 18 C 1.35897 * 116.99870 * 180.02562 * 17 16 15 19 19 C 1.38738 * 120.05494 * 270.27287 * 18 17 16 20 20 C 1.50702 * 120.02558 * 0.02562 * 19 18 17 21 21 C 1.38141 * 119.94395 * 180.25974 * 19 18 17 22 22 C 1.38274 * 120.05552 * 359.44290 * 21 19 18 23 23 C 1.38261 * 120.10990 * 0.30244 * 22 21 19 24 24 C 1.38149 * 120.05703 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.02698 * 180.02562 * 24 23 22 26 26 H 1.08997 * 109.47459 * 60.00066 * 1 2 3 27 27 H 1.09011 * 109.47137 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47650 * 299.99766 * 1 2 3 29 29 H 1.08996 * 109.47140 * 240.00370 * 2 1 3 30 30 H 1.09006 * 109.46958 * 119.99672 * 2 1 3 31 31 H 1.09004 * 109.47102 * 30.00006 * 4 3 2 32 32 H 1.08996 * 109.47211 * 150.00164 * 4 3 2 33 33 H 0.96996 * 119.99240 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47699 * 59.99756 * 15 13 3 35 35 H 1.08995 * 109.46957 * 299.99117 * 15 13 3 36 36 H 1.08998 * 109.47375 * 59.99736 * 16 15 13 37 37 H 1.08998 * 109.47292 * 299.99975 * 16 15 13 38 38 H 1.09000 * 109.47072 * 270.24905 * 20 19 18 39 39 H 1.08998 * 109.47473 * 30.25788 * 20 19 18 40 40 H 1.09000 * 109.46857 * 150.25773 * 20 19 18 41 41 H 1.08002 * 119.97550 * 179.72852 * 21 19 18 42 42 H 1.07998 * 119.94363 * 180.27764 * 22 21 19 43 43 H 1.07996 * 119.97484 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47189 * 89.99754 * 25 24 23 45 45 H 1.09006 * 109.46628 * 209.99786 * 25 24 23 46 46 H 1.09001 * 109.47332 * 329.99143 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0956 7 6 4.1490 2.3897 -2.8779 8 7 5.3910 2.1827 -3.2578 9 14 3.0126 3.4352 -3.9292 10 1 3.1161 4.8555 -3.5081 11 1 3.4056 3.3120 -5.3559 12 1 1.6129 2.9692 -3.7592 13 6 2.2428 2.0166 1.1673 14 8 2.6475 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 6 2.3240 2.2432 3.6352 17 8 2.0857 1.5696 4.8728 18 6 2.3323 2.2675 6.0125 19 6 3.5922 2.2287 6.5923 20 6 4.6892 1.4128 5.9583 21 6 3.8388 2.9347 7.7537 22 6 2.8345 3.6889 8.3322 23 6 1.5796 3.7334 7.7535 24 6 1.3263 3.0246 6.5951 25 6 -0.0416 3.0740 5.9646 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.5816 1.6877 -2.0283 32 1 2.0954 3.1410 -1.1383 33 1 5.7169 2.5732 -4.0837 34 1 2.6226 0.4188 2.5299 35 1 0.9443 1.0115 2.5302 36 1 1.6938 3.1307 3.5779 37 1 3.3719 2.5374 3.5772 38 1 4.6684 0.4004 6.3616 39 1 4.5385 1.3774 4.8794 40 1 5.6542 1.8705 6.1756 41 1 4.8181 2.9014 8.2079 42 1 3.0305 4.2437 9.2378 43 1 0.7967 4.3228 8.2074 44 1 -0.0839 3.8983 5.2527 45 1 -0.2366 2.1354 5.4458 46 1 -0.7936 3.2240 6.7393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264073002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:23 Heat of formation + Delta-G solvation = -62.058015 kcal Electronic energy + Delta-G solvation = -25035.666727 eV Core-core repulsion = 21504.282110 eV Total energy + Delta-G solvation = -3531.384617 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.34638 -39.25326 -37.35599 -35.46106 -33.71513 -32.86462 -31.99172 -30.83088 -30.26681 -27.89252 -26.99803 -26.77055 -24.15238 -22.99180 -21.98580 -21.57697 -21.01701 -18.43725 -17.75298 -16.95713 -16.66332 -16.37768 -15.63524 -15.43286 -15.19180 -14.88413 -14.22498 -14.14608 -13.70728 -13.49609 -13.47599 -13.26619 -13.11844 -13.04990 -12.81034 -12.54892 -12.28274 -12.05065 -12.02610 -11.84030 -11.75170 -11.64344 -11.42009 -11.19662 -11.01577 -10.96976 -10.69608 -10.49844 -10.17229 -9.78649 -9.56044 -9.10163 -8.73444 -8.60429 -8.59961 -7.76607 -6.09957 -4.08809 1.06548 1.18107 3.17274 3.27730 3.28767 3.34211 3.35969 3.66776 4.07812 4.38400 4.61922 4.67502 4.80317 4.95015 5.08444 5.10901 5.14015 5.24344 5.24423 5.26162 5.40629 5.42996 5.50698 5.52208 5.57026 5.59880 5.65048 5.67444 5.72594 5.84259 5.90193 6.01593 6.03263 6.14042 6.15034 6.29767 6.31443 6.39737 6.45253 6.66513 6.68989 6.92442 7.31022 7.53425 7.59607 8.20199 8.45210 8.88370 8.94885 9.50248 11.03439 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.003116 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.107935 B = 8984.472007 C = 9443.690287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.590 5.590 4 C 0.216 3.784 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.512 3.488 14 O -0.543 6.543 15 C -0.138 4.138 16 C 0.084 3.916 17 O -0.336 6.336 18 C 0.099 3.901 19 C -0.097 4.097 20 C -0.114 4.114 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.099 4.099 25 C -0.114 4.114 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.699 -2.490 20.405 22.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.322 5.322 4 C 0.096 3.904 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.299 3.701 14 O -0.421 6.421 15 C -0.178 4.178 16 C 0.010 3.990 17 O -0.254 6.254 18 C 0.056 3.944 19 C -0.097 4.097 20 C -0.170 4.170 21 C -0.135 4.135 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.099 4.099 25 C -0.170 4.170 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.416 -2.030 20.186 22.367 hybrid contribution -0.329 0.664 -0.659 0.992 sum -9.746 -1.366 19.527 21.867 Atomic orbital electron populations 1.22230 0.96704 1.01670 1.02218 1.21479 0.93456 0.83705 1.03293 1.47915 1.63874 1.13468 1.06906 1.19656 0.97357 0.93379 0.80042 1.21328 0.95323 1.32963 1.07132 0.90751 1.24860 0.95005 0.95803 0.97350 1.69901 1.15138 1.44971 1.23570 0.86849 0.81460 0.81606 0.79772 1.19911 1.21057 1.19069 1.20035 0.78353 0.86788 0.84927 1.90688 1.45846 1.18233 1.87320 1.21536 1.04322 1.00060 0.91852 1.22391 1.01521 0.94550 0.80572 1.85897 1.87592 1.39984 1.11886 1.18317 0.91945 0.95344 0.88820 1.20276 0.94406 0.98595 0.96459 1.20739 0.95781 0.99053 1.01434 1.20930 0.99509 0.97673 0.95350 1.21117 0.93265 0.99433 1.00088 1.20909 0.97286 0.99750 0.95614 1.20239 0.96643 0.96456 0.96612 1.20724 0.92417 1.03249 1.00656 0.92266 0.91900 0.92905 0.89667 0.91157 0.95193 0.94599 0.92553 0.88335 0.88574 0.92102 0.91802 0.90898 0.90966 0.91506 0.85761 0.85930 0.85835 0.91151 0.90725 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.59 5.93 -4.04 -0.02 1.57 16 3 N -0.59 -11.90 2.46 -175.07 -0.43 -12.33 16 4 C 0.22 5.24 4.23 -5.20 -0.02 5.22 16 5 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 6 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 9 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 13 C 0.51 10.21 7.67 -10.99 -0.08 10.13 16 14 O -0.54 -13.13 15.56 5.55 0.09 -13.05 16 15 C -0.14 -2.01 4.62 -27.88 -0.13 -2.14 16 16 C 0.08 1.25 4.98 37.16 0.18 1.43 16 17 O -0.34 -4.65 8.33 -19.42 -0.16 -4.81 16 18 C 0.10 1.32 5.67 -39.21 -0.22 1.09 16 19 C -0.10 -1.18 5.89 -104.47 -0.62 -1.80 16 20 C -0.11 -1.26 9.79 36.01 0.35 -0.90 16 21 C -0.12 -1.21 9.70 -39.60 -0.38 -1.59 16 22 C -0.12 -1.16 10.04 -39.56 -0.40 -1.56 16 23 C -0.12 -1.19 9.70 -39.61 -0.38 -1.57 16 24 C -0.10 -1.17 5.89 -104.47 -0.62 -1.78 16 25 C -0.11 -1.15 9.79 36.01 0.35 -0.79 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.05 0.61 7.22 -51.93 -0.38 0.24 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.07 0.90 6.44 -51.93 -0.33 0.57 16 31 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 32 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.10 1.32 7.40 -51.93 -0.38 0.93 16 35 H 0.10 1.19 7.19 -51.93 -0.37 0.81 16 36 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 37 H 0.06 1.03 7.19 -51.93 -0.37 0.66 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.89 6.30 -51.93 -0.33 0.57 16 40 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 46 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 376.77 15.07 5.68 5.68 Total: -1.00 -33.96 376.77 -8.28 -42.25 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.51 Total: 0.17 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -2.05 Total: -7.90 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.34 Total: -39.21 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.08 Total: -17.85 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.96 -8.28 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264073002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.812 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds