Wall clock time and date at job start Tue Mar 31 2020 08:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.46860 * 2 1 4 4 C 1.46491 * 120.00006 * 269.99772 * 3 2 1 5 5 C 1.50698 * 109.47597 * 270.00091 * 4 3 2 6 6 H 1.08008 * 119.99424 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00375 * 179.97438 * 5 4 3 8 8 N 1.31523 * 119.99899 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00004 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.46889 * 90.00102 * 9 7 5 11 11 H 1.48496 * 109.46779 * 209.99910 * 9 7 5 12 12 H 1.48496 * 109.46877 * 329.99827 * 9 7 5 13 13 C 1.34780 * 119.99664 * 89.99794 * 3 2 1 14 14 O 1.21286 * 119.99252 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00089 * 0.02562 * 13 3 2 16 16 C 1.53002 * 109.46832 * 179.97438 * 15 13 3 17 17 O 1.42904 * 109.47152 * 179.97438 * 16 15 13 18 18 C 1.35897 * 116.99870 * 180.02562 * 17 16 15 19 19 C 1.38738 * 120.05494 * 270.27287 * 18 17 16 20 20 C 1.50702 * 120.02558 * 0.02562 * 19 18 17 21 21 C 1.38141 * 119.94395 * 180.25974 * 19 18 17 22 22 C 1.38274 * 120.05552 * 359.44290 * 21 19 18 23 23 C 1.38261 * 120.10990 * 0.30244 * 22 21 19 24 24 C 1.38149 * 120.05703 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.02698 * 180.02562 * 24 23 22 26 26 H 1.08997 * 109.47459 * 60.00066 * 1 2 3 27 27 H 1.09011 * 109.47137 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47650 * 299.99766 * 1 2 3 29 29 H 1.08996 * 109.47140 * 240.00370 * 2 1 3 30 30 H 1.09006 * 109.46958 * 119.99672 * 2 1 3 31 31 H 1.09004 * 109.47102 * 30.00006 * 4 3 2 32 32 H 1.08996 * 109.47211 * 150.00164 * 4 3 2 33 33 H 0.96996 * 119.99240 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.47699 * 59.99756 * 15 13 3 35 35 H 1.08995 * 109.46957 * 299.99117 * 15 13 3 36 36 H 1.08998 * 109.47375 * 59.99736 * 16 15 13 37 37 H 1.08998 * 109.47292 * 299.99975 * 16 15 13 38 38 H 1.09000 * 109.47072 * 270.24905 * 20 19 18 39 39 H 1.08998 * 109.47473 * 30.25788 * 20 19 18 40 40 H 1.09000 * 109.46857 * 150.25773 * 20 19 18 41 41 H 1.08002 * 119.97550 * 179.72852 * 21 19 18 42 42 H 1.07998 * 119.94363 * 180.27764 * 22 21 19 43 43 H 1.07996 * 119.97484 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47189 * 89.99754 * 25 24 23 45 45 H 1.09006 * 109.46628 * 209.99786 * 25 24 23 46 46 H 1.09001 * 109.47332 * 329.99143 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2686 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0956 7 6 4.1490 2.3897 -2.8779 8 7 5.3910 2.1827 -3.2578 9 14 3.0126 3.4352 -3.9292 10 1 3.1161 4.8555 -3.5081 11 1 3.4056 3.3120 -5.3559 12 1 1.6129 2.9692 -3.7592 13 6 2.2428 2.0166 1.1673 14 8 2.6475 3.1599 1.1672 15 6 1.9921 1.3060 2.4723 16 6 2.3240 2.2432 3.6352 17 8 2.0857 1.5696 4.8728 18 6 2.3323 2.2675 6.0125 19 6 3.5922 2.2287 6.5923 20 6 4.6892 1.4128 5.9583 21 6 3.8388 2.9347 7.7537 22 6 2.8345 3.6889 8.3322 23 6 1.5796 3.7334 7.7535 24 6 1.3263 3.0246 6.5951 25 6 -0.0416 3.0740 5.9646 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.5816 1.6877 -2.0283 32 1 2.0954 3.1410 -1.1383 33 1 5.7169 2.5732 -4.0837 34 1 2.6226 0.4188 2.5299 35 1 0.9443 1.0115 2.5302 36 1 1.6938 3.1307 3.5779 37 1 3.3719 2.5374 3.5772 38 1 4.6684 0.4004 6.3616 39 1 4.5385 1.3774 4.8794 40 1 5.6542 1.8705 6.1756 41 1 4.8181 2.9014 8.2079 42 1 3.0305 4.2437 9.2378 43 1 0.7967 4.3228 8.2074 44 1 -0.0839 3.8983 5.2527 45 1 -0.2366 2.1354 5.4458 46 1 -0.7936 3.2240 6.7393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264073002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:50:21 Heat of formation + Delta-G solvation = -82.016167 kcal Electronic energy + Delta-G solvation = -25036.532177 eV Core-core repulsion = 21504.282110 eV Total energy + Delta-G solvation = -3532.250067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.32190 -40.74384 -38.33728 -37.06049 -34.91450 -34.53348 -33.28576 -31.95628 -31.54008 -29.60771 -27.98666 -27.55820 -25.63502 -24.36807 -23.40774 -22.66399 -21.84650 -19.90116 -19.13506 -18.85560 -17.75770 -17.68163 -17.16779 -16.58573 -16.30801 -16.13417 -15.83530 -15.18778 -14.95014 -14.72573 -14.69351 -14.44009 -14.29969 -14.07093 -13.88956 -13.79506 -13.59808 -13.45185 -13.25315 -13.01088 -12.87577 -12.82267 -12.55708 -12.46173 -12.35493 -12.16405 -12.03886 -11.96093 -11.82704 -11.75316 -10.84485 -10.83807 -10.75948 -9.54531 -9.48143 -9.45841 -8.35243 -6.40418 0.19353 0.36443 1.31562 1.35656 1.44051 1.71225 2.02899 2.29820 2.55503 2.97298 2.99905 3.63760 3.79767 3.86105 3.93781 4.00809 4.08485 4.13253 4.34681 4.37179 4.41326 4.46445 4.54772 4.58484 4.63770 4.71250 4.72424 4.73963 4.77019 4.82634 4.86145 4.90860 4.91809 5.00605 5.03168 5.18716 5.31400 5.39709 5.45961 5.50515 5.51014 5.60904 5.62741 5.85495 6.21990 6.52732 6.60851 6.65511 7.19060 7.35249 8.81761 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.003116 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.107935 B = 8984.472007 C = 9443.690287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 N -0.597 5.597 4 C 0.225 3.775 5 C -0.537 4.537 6 H 0.029 0.971 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.237 1.237 13 C 0.504 3.496 14 O -0.596 6.596 15 C -0.121 4.121 16 C 0.094 3.906 17 O -0.333 6.333 18 C 0.063 3.937 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.112 4.112 25 C -0.112 4.112 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.050 0.950 32 H 0.018 0.982 33 H 0.268 0.732 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.164 -2.687 21.955 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.026 4.026 3 N -0.328 5.328 4 C 0.103 3.897 5 C -0.575 4.575 6 H 0.047 0.953 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.293 3.707 14 O -0.477 6.477 15 C -0.160 4.160 16 C 0.019 3.981 17 O -0.251 6.251 18 C 0.020 3.980 19 C -0.115 4.115 20 C -0.169 4.169 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.113 4.113 25 C -0.168 4.168 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.913 -2.286 21.759 24.912 hybrid contribution 0.536 0.696 -1.002 1.332 sum -11.377 -1.590 20.757 23.724 Atomic orbital electron populations 1.22159 0.93825 1.03733 1.02165 1.21822 0.95750 0.80918 1.04114 1.48036 1.63777 1.15273 1.05673 1.19310 0.94841 0.93042 0.82526 1.21569 0.97085 1.32158 1.06724 0.95295 1.25858 0.96730 0.97188 0.98957 1.70054 1.17432 1.46556 1.24500 0.85719 0.80502 0.78973 0.77795 1.20228 1.19951 1.16044 1.20924 0.76996 0.86372 0.86421 1.90654 1.48142 1.20758 1.88195 1.21425 1.06599 0.99531 0.88465 1.22136 0.99852 0.94462 0.81664 1.85886 1.87566 1.39971 1.11663 1.18663 0.93158 0.97249 0.88938 1.20518 0.94332 0.99281 0.97412 1.20733 0.96294 0.99758 1.00089 1.21249 1.00868 0.97209 0.94816 1.21535 0.92703 0.98582 1.00661 1.21278 0.98342 0.99353 0.95001 1.20531 0.97001 0.96411 0.97328 1.20737 0.92269 1.02702 1.01139 0.93427 0.88726 0.91866 0.90847 0.88479 0.93208 0.96373 0.92255 0.86673 0.85274 0.93040 0.94193 0.89986 0.93007 0.90301 0.83678 0.82918 0.83302 0.91537 0.91426 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 10.24 71.98 0.74 -2.73 16 2 C 0.10 2.76 5.93 86.38 0.51 3.27 16 3 N -0.60 -24.01 2.46 -826.17 -2.03 -26.04 16 4 C 0.23 10.99 4.23 85.63 0.36 11.35 16 5 C -0.54 -31.80 9.94 25.60 0.25 -31.55 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.63 5.47 84.65 0.46 1.10 16 8 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 9 Si 0.95 44.66 27.47 68.60 1.88 46.54 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 13 C 0.50 20.32 7.67 87.66 0.67 20.99 16 14 O -0.60 -29.99 15.56 -3.05 -0.05 -30.04 16 15 C -0.12 -3.43 4.62 29.85 0.14 -3.29 16 16 C 0.09 2.84 4.98 71.98 0.36 3.20 16 17 O -0.33 -9.20 8.33 -92.39 -0.77 -9.97 16 18 C 0.06 1.66 5.67 22.51 0.13 1.79 16 19 C -0.11 -2.76 5.89 -19.77 -0.12 -2.88 16 20 C -0.11 -2.50 9.79 71.24 0.70 -1.80 16 21 C -0.12 -2.37 9.70 22.26 0.22 -2.15 16 22 C -0.12 -1.95 10.04 22.28 0.22 -1.72 16 23 C -0.12 -2.19 9.70 22.25 0.22 -1.98 16 24 C -0.11 -2.52 5.89 -19.77 -0.12 -2.64 16 25 C -0.11 -2.11 9.79 71.24 0.70 -1.41 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.06 1.24 7.22 -2.39 -0.02 1.23 16 29 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 30 H 0.10 2.26 6.44 -2.38 -0.02 2.24 16 31 H 0.05 2.23 7.13 -2.38 -0.02 2.22 16 32 H 0.02 0.95 6.85 -2.39 -0.02 0.94 16 33 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.12 2.92 7.40 -2.39 -0.02 2.90 16 35 H 0.13 2.84 7.19 -2.39 -0.02 2.82 16 36 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.04 1.38 7.19 -2.39 -0.02 1.36 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.35 6.30 -2.39 -0.02 1.33 16 40 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 41 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 43 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.35 7.53 -2.38 -0.02 1.33 16 46 H 0.09 1.22 8.09 -2.39 -0.02 1.20 16 Total: -1.00 -78.20 376.77 5.67 -72.53 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.89 Total: 17.30 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 5.44 Total: -10.46 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.73 Total: -85.91 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -0.82 Total: -40.00 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.54 kcal Total: -78.20 5.67 -72.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264073002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.486 kcal (2) G-P(sol) polarization free energy of solvation -78.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds