Wall clock time and date at job start Tue Mar 31 2020 10:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99842 * 2 1 4 4 C 1.50700 * 109.47364 * 293.95809 * 3 2 1 5 5 C 1.38298 * 119.93171 * 90.00109 * 4 3 2 6 6 C 1.38102 * 120.07058 * 179.97438 * 5 4 3 7 7 C 1.38879 * 119.92618 * 359.97438 * 6 5 4 8 8 O 1.35756 * 120.06820 * 180.02562 * 7 6 5 9 9 C 1.34834 * 116.99874 * 4.67105 * 8 7 6 10 10 H 1.08002 * 119.99964 * 5.40768 * 9 8 7 11 11 C 1.38659 * 120.00237 * 185.39785 * 9 8 7 12 12 N 1.31555 * 119.99399 * 0.02562 * 11 9 8 13 13 Si 1.86789 * 120.00045 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47429 * 60.00089 * 13 11 9 15 15 H 1.48504 * 109.47193 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47362 * 299.99962 * 13 11 9 17 17 C 1.38873 * 119.86477 * 0.27298 * 7 6 5 18 18 C 1.38105 * 119.92974 * 359.47230 * 17 7 6 19 19 C 1.46891 * 111.00353 * 123.95694 * 2 1 3 20 20 C 1.52998 * 109.47570 * 159.95588 * 19 2 1 21 21 H 1.08997 * 109.48060 * 53.15698 * 20 19 2 22 22 C 1.53088 * 109.48541 * 173.19010 * 20 19 2 23 23 C 1.53173 * 109.16350 * 177.58034 * 22 20 19 24 24 C 1.53180 * 109.04648 * 303.02972 * 23 22 20 25 25 C 1.53093 * 109.15943 * 56.98027 * 24 23 22 26 26 O 1.42910 * 109.47642 * 293.14343 * 20 19 2 27 27 H 1.09002 * 109.46814 * 59.04411 * 1 2 3 28 28 H 1.09006 * 109.46542 * 179.04218 * 1 2 3 29 29 H 1.08999 * 109.46613 * 299.03895 * 1 2 3 30 30 H 1.09000 * 109.47418 * 173.95356 * 3 2 1 31 31 H 1.09002 * 109.47019 * 53.95487 * 3 2 1 32 32 H 1.07998 * 119.96945 * 359.97438 * 5 4 3 33 33 H 1.08000 * 120.03826 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99374 * 179.97438 * 12 11 9 35 35 H 1.08002 * 120.03648 * 179.72876 * 17 7 6 36 36 H 1.08006 * 119.96401 * 180.23295 * 18 17 7 37 37 H 1.09008 * 109.47327 * 279.95576 * 19 2 1 38 38 H 1.09005 * 109.47176 * 39.95452 * 19 2 1 39 39 H 1.09009 * 109.51995 * 297.49554 * 22 20 19 40 40 H 1.08997 * 109.52417 * 57.68305 * 22 20 19 41 41 H 1.09002 * 109.54850 * 183.16253 * 23 22 20 42 42 H 1.09000 * 109.61095 * 62.94781 * 23 22 20 43 43 H 1.08999 * 109.52367 * 297.07395 * 24 23 22 44 44 H 1.08995 * 109.57645 * 176.90828 * 24 23 22 45 45 H 1.09000 * 109.48439 * 182.41079 * 25 24 23 46 46 H 1.08994 * 109.49180 * 62.37660 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 6 0.4501 2.7491 -1.4062 6 6 0.1189 3.3700 -2.5945 7 6 0.9793 3.2892 -3.6817 8 8 0.6568 3.8988 -4.8511 9 6 -0.4650 4.6468 -4.8624 10 1 -1.0139 4.8109 -3.9468 11 6 -0.9139 5.2054 -6.0494 12 7 -0.2455 5.0052 -7.1647 13 14 -2.4676 6.2421 -6.0650 14 1 -2.2934 7.4088 -5.1628 15 1 -2.7308 6.7190 -7.4465 16 1 -3.6145 5.4223 -5.5980 17 6 2.1678 2.5793 -3.5718 18 6 2.4958 1.9651 -2.3792 19 6 1.9955 -0.7660 1.1374 20 6 3.4434 -1.1708 0.8534 21 1 4.0225 -0.2866 0.5872 22 6 4.0466 -1.8193 2.1021 23 6 5.4752 -2.2761 1.7911 24 6 5.4449 -3.2334 0.5957 25 6 4.7879 -2.5300 -0.5948 26 8 3.4738 -2.1038 -0.2286 27 1 -0.3633 0.5286 -0.8813 28 1 -0.3632 -1.0276 -0.0172 29 1 -0.3632 0.4988 0.8985 30 1 3.0797 1.3445 0.1082 31 1 1.5611 1.9273 0.8309 32 1 -0.2183 2.8119 -0.5603 33 1 -0.8081 3.9176 -2.6783 34 1 -0.5598 5.3957 -7.9952 35 1 2.8368 2.5111 -4.4169 36 1 3.4217 1.4160 -2.2920 37 1 1.9599 -0.1514 2.0371 38 1 1.3903 -1.6606 1.2844 39 1 4.0648 -1.0947 2.9163 40 1 3.4443 -2.6800 2.3926 41 1 5.8911 -2.7890 2.6584 42 1 6.0917 -1.4102 1.5495 43 1 4.8708 -4.1227 0.8557 44 1 6.4627 -3.5210 0.3323 45 1 4.7248 -3.2207 -1.4356 46 1 5.3846 -1.6636 -0.8800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264545700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:19 Heat of formation + Delta-G solvation = -52.282056 kcal Electronic energy + Delta-G solvation = -24861.203115 eV Core-core repulsion = 21330.242415 eV Total energy + Delta-G solvation = -3530.960700 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.69740 -39.02917 -37.50911 -35.86424 -33.74420 -32.38494 -31.95890 -30.12357 -29.90786 -27.52436 -26.21055 -25.18195 -24.39874 -22.99462 -21.87189 -21.30897 -20.46193 -20.09930 -17.92959 -16.93025 -16.45465 -16.20893 -15.59256 -15.22097 -14.90796 -14.63444 -14.50817 -14.49127 -14.00581 -13.80595 -13.49738 -13.44117 -13.03414 -12.82436 -12.62835 -12.49710 -12.29412 -12.04445 -11.77641 -11.62655 -11.49359 -11.35835 -11.29138 -11.15906 -10.89498 -10.68422 -10.62397 -10.51859 -10.39228 -10.24060 -9.46872 -9.30845 -8.79482 -8.16621 -8.06922 -7.11376 -6.41741 -4.00402 2.28424 2.34920 3.14841 3.15741 3.18657 3.70871 3.99100 3.99410 4.53367 4.58290 4.62480 4.71532 4.86925 4.97714 5.09858 5.15158 5.19821 5.22813 5.33196 5.36626 5.42877 5.43610 5.48496 5.56078 5.64307 5.65084 5.69329 5.71273 5.79094 5.84156 5.87226 5.90075 5.96652 6.05797 6.19221 6.27766 6.48591 6.76878 6.96169 7.06304 7.15465 7.20195 7.29738 7.35408 7.46690 7.49802 7.89332 8.03445 9.03935 9.75339 10.76430 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.029672 B = 0.002632 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.425474 B =10636.908091 C =11186.748451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.528 5.528 3 C 0.111 3.889 4 C -0.176 4.176 5 C -0.066 4.066 6 C -0.235 4.235 7 C 0.155 3.845 8 O -0.179 6.179 9 C -0.391 4.391 10 H 0.090 0.910 11 C 0.039 3.961 12 N -0.863 5.863 13 Si 0.940 3.060 14 H -0.270 1.270 15 H -0.278 1.278 16 H -0.270 1.270 17 C -0.194 4.194 18 C -0.051 4.051 19 C 0.061 3.939 20 C 0.097 3.903 21 H 0.058 0.942 22 C -0.151 4.151 23 C -0.121 4.121 24 C -0.157 4.157 25 C 0.059 3.941 26 O -0.359 6.359 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.018 0.982 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.270 0.730 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.738 -12.642 18.267 23.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.251 5.251 3 C -0.015 4.015 4 C -0.178 4.178 5 C -0.084 4.084 6 C -0.254 4.254 7 C 0.102 3.898 8 O -0.082 6.082 9 C -0.468 4.468 10 H 0.108 0.892 11 C -0.165 4.165 12 N -0.498 5.498 13 Si 0.765 3.235 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.195 1.195 17 C -0.214 4.214 18 C -0.069 4.069 19 C -0.067 4.067 20 C 0.039 3.961 21 H 0.076 0.924 22 C -0.190 4.190 23 C -0.159 4.159 24 C -0.195 4.195 25 C -0.018 4.018 26 O -0.278 6.278 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.120 0.880 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.110 0.890 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.803 -12.856 17.265 22.897 hybrid contribution -0.835 0.943 0.897 1.546 sum 6.968 -11.913 18.162 22.811 Atomic orbital electron populations 1.22420 0.87197 1.01604 1.01004 1.61935 1.07899 1.13661 1.41649 1.20871 0.99151 0.86972 0.94547 1.19038 0.97515 1.05507 0.95716 1.20579 0.95272 0.96195 0.96386 1.21112 1.02280 1.07983 0.94019 1.19401 0.92840 0.90811 0.86773 1.83995 1.41377 1.55341 1.27485 1.21258 1.02041 1.27391 0.96062 0.89222 1.25278 0.99120 0.97964 0.94168 1.70034 1.38393 1.42385 0.99036 0.85797 0.80290 0.79552 0.77875 1.19543 1.20296 1.19538 1.20199 0.97395 1.05132 0.98648 1.20426 0.98088 0.96709 0.91720 1.22109 0.94607 0.98127 0.91859 1.22086 0.96262 0.91413 0.86365 0.92376 1.22206 0.96781 1.01525 0.98449 1.21562 0.96629 0.99402 0.98287 1.22210 1.01369 0.99360 0.96536 1.22538 0.84753 0.98218 0.96288 1.88063 1.26358 1.61865 1.51484 0.90204 0.91916 0.96354 0.91156 0.95164 0.88006 0.85708 0.92010 0.86650 0.87253 0.93586 0.90323 0.91103 0.91085 0.91689 0.91837 0.91223 0.91155 0.89035 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.10 60.07 0.55 0.89 16 2 N -0.53 -7.25 4.65 -244.37 -1.14 -8.38 16 3 C 0.11 1.57 4.94 -4.98 -0.02 1.54 16 4 C -0.18 -3.09 4.89 -104.58 -0.51 -3.60 16 5 C -0.07 -1.21 7.94 -39.61 -0.31 -1.53 16 6 C -0.23 -5.17 9.14 -39.39 -0.36 -5.53 16 7 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 8 O -0.18 -5.18 9.76 0.02 0.00 -5.18 16 9 C -0.39 -11.06 9.45 30.89 0.29 -10.77 16 10 H 0.09 2.34 5.27 -52.49 -0.28 2.07 16 11 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 12 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 13 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 15 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 16 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 17 C -0.19 -4.23 9.99 -39.40 -0.39 -4.63 16 18 C -0.05 -0.94 9.69 -39.61 -0.38 -1.33 16 19 C 0.06 0.67 4.67 -3.83 -0.02 0.66 16 20 C 0.10 1.04 2.75 -26.69 -0.07 0.96 16 21 H 0.06 0.65 6.65 -51.93 -0.35 0.31 16 22 C -0.15 -1.24 5.42 -26.60 -0.14 -1.38 16 23 C -0.12 -0.90 6.03 -26.55 -0.16 -1.06 16 24 C -0.16 -1.22 6.14 -26.59 -0.16 -1.38 16 25 C 0.06 0.58 6.84 37.21 0.25 0.83 16 26 O -0.36 -4.56 10.38 -35.23 -0.37 -4.92 16 27 H 0.08 1.21 6.10 -51.93 -0.32 0.90 16 28 H 0.06 0.76 8.00 -51.93 -0.42 0.34 16 29 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.92 6.51 -51.93 -0.34 0.59 16 31 H 0.03 0.40 8.06 -51.93 -0.42 -0.02 16 32 H 0.10 1.63 8.02 -52.49 -0.42 1.21 16 33 H 0.13 2.75 5.69 -52.49 -0.30 2.46 16 34 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 36 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 37 H 0.05 0.44 7.99 -51.92 -0.41 0.03 16 38 H 0.08 0.85 7.84 -51.93 -0.41 0.44 16 39 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -31.33 366.29 -9.49 -40.82 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.44 Total: 3.08 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -1.81 Total: -21.77 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: -0.38 Total: -33.24 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.37 Total: -10.10 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.33 -9.49 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264545700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.460 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds