Wall clock time and date at job start Tue Mar 31 2020 10:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99842 * 2 1 4 4 C 1.50700 * 109.47364 * 293.95809 * 3 2 1 5 5 C 1.38298 * 119.93171 * 90.00109 * 4 3 2 6 6 C 1.38102 * 120.07058 * 179.97438 * 5 4 3 7 7 C 1.38879 * 119.92618 * 359.97438 * 6 5 4 8 8 O 1.35756 * 120.06820 * 180.02562 * 7 6 5 9 9 C 1.34834 * 116.99874 * 4.67105 * 8 7 6 10 10 H 1.08002 * 119.99964 * 5.40768 * 9 8 7 11 11 C 1.38659 * 120.00237 * 185.39785 * 9 8 7 12 12 N 1.31555 * 119.99399 * 0.02562 * 11 9 8 13 13 Si 1.86789 * 120.00045 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47429 * 60.00089 * 13 11 9 15 15 H 1.48504 * 109.47193 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47362 * 299.99962 * 13 11 9 17 17 C 1.38873 * 119.86477 * 0.27298 * 7 6 5 18 18 C 1.38105 * 119.92974 * 359.47230 * 17 7 6 19 19 C 1.46891 * 111.00353 * 123.95694 * 2 1 3 20 20 C 1.52998 * 109.47570 * 159.95588 * 19 2 1 21 21 H 1.08997 * 109.48060 * 53.15698 * 20 19 2 22 22 C 1.53088 * 109.48541 * 173.19010 * 20 19 2 23 23 C 1.53173 * 109.16350 * 177.58034 * 22 20 19 24 24 C 1.53180 * 109.04648 * 303.02972 * 23 22 20 25 25 C 1.53093 * 109.15943 * 56.98027 * 24 23 22 26 26 O 1.42910 * 109.47642 * 293.14343 * 20 19 2 27 27 H 1.09002 * 109.46814 * 59.04411 * 1 2 3 28 28 H 1.09006 * 109.46542 * 179.04218 * 1 2 3 29 29 H 1.08999 * 109.46613 * 299.03895 * 1 2 3 30 30 H 1.09000 * 109.47418 * 173.95356 * 3 2 1 31 31 H 1.09002 * 109.47019 * 53.95487 * 3 2 1 32 32 H 1.07998 * 119.96945 * 359.97438 * 5 4 3 33 33 H 1.08000 * 120.03826 * 179.97438 * 6 5 4 34 34 H 0.97008 * 119.99374 * 179.97438 * 12 11 9 35 35 H 1.08002 * 120.03648 * 179.72876 * 17 7 6 36 36 H 1.08006 * 119.96401 * 180.23295 * 18 17 7 37 37 H 1.09008 * 109.47327 * 279.95576 * 19 2 1 38 38 H 1.09005 * 109.47176 * 39.95452 * 19 2 1 39 39 H 1.09009 * 109.51995 * 297.49554 * 22 20 19 40 40 H 1.08997 * 109.52417 * 57.68305 * 22 20 19 41 41 H 1.09002 * 109.54850 * 183.16253 * 23 22 20 42 42 H 1.09000 * 109.61095 * 62.94781 * 23 22 20 43 43 H 1.08999 * 109.52367 * 297.07395 * 24 23 22 44 44 H 1.08995 * 109.57645 * 176.90828 * 24 23 22 45 45 H 1.09000 * 109.48439 * 182.41079 * 25 24 23 46 46 H 1.08994 * 109.49180 * 62.37660 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 -1.2984 5 6 0.4501 2.7491 -1.4062 6 6 0.1189 3.3700 -2.5945 7 6 0.9793 3.2892 -3.6817 8 8 0.6568 3.8988 -4.8511 9 6 -0.4650 4.6468 -4.8624 10 1 -1.0139 4.8109 -3.9468 11 6 -0.9139 5.2054 -6.0494 12 7 -0.2455 5.0052 -7.1647 13 14 -2.4676 6.2421 -6.0650 14 1 -2.2934 7.4088 -5.1628 15 1 -2.7308 6.7190 -7.4465 16 1 -3.6145 5.4223 -5.5980 17 6 2.1678 2.5793 -3.5718 18 6 2.4958 1.9651 -2.3792 19 6 1.9955 -0.7660 1.1374 20 6 3.4434 -1.1708 0.8534 21 1 4.0225 -0.2866 0.5872 22 6 4.0466 -1.8193 2.1021 23 6 5.4752 -2.2761 1.7911 24 6 5.4449 -3.2334 0.5957 25 6 4.7879 -2.5300 -0.5948 26 8 3.4738 -2.1038 -0.2286 27 1 -0.3633 0.5286 -0.8813 28 1 -0.3632 -1.0276 -0.0172 29 1 -0.3632 0.4988 0.8985 30 1 3.0797 1.3445 0.1082 31 1 1.5611 1.9273 0.8309 32 1 -0.2183 2.8119 -0.5603 33 1 -0.8081 3.9176 -2.6783 34 1 -0.5598 5.3957 -7.9952 35 1 2.8368 2.5111 -4.4169 36 1 3.4217 1.4160 -2.2920 37 1 1.9599 -0.1514 2.0371 38 1 1.3903 -1.6606 1.2844 39 1 4.0648 -1.0947 2.9163 40 1 3.4443 -2.6800 2.3926 41 1 5.8911 -2.7890 2.6584 42 1 6.0917 -1.4102 1.5495 43 1 4.8708 -4.1227 0.8557 44 1 6.4627 -3.5210 0.3323 45 1 4.7248 -3.2207 -1.4356 46 1 5.3846 -1.6636 -0.8800 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264545700.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:18 Heat of formation + Delta-G solvation = -71.885178 kcal Electronic energy + Delta-G solvation = -24862.053170 eV Core-core repulsion = 21330.242415 eV Total energy + Delta-G solvation = -3531.810755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.88994 -40.34822 -38.92412 -37.29320 -34.43735 -34.31560 -32.91700 -31.77372 -31.33319 -28.38500 -27.79388 -26.82793 -25.22069 -23.94623 -23.54068 -22.49345 -21.49932 -21.07800 -19.82138 -18.79764 -17.36361 -16.97236 -16.67454 -16.52885 -16.32339 -16.01258 -15.70864 -15.49736 -15.32220 -15.19868 -15.07259 -14.61252 -14.31908 -14.10606 -13.92227 -13.57156 -13.48424 -13.16060 -12.97582 -12.93130 -12.69739 -12.62095 -12.38044 -12.27028 -12.14428 -12.06205 -11.94389 -11.83914 -11.49616 -11.18272 -11.05533 -10.77354 -10.22657 -9.74349 -9.17308 -8.85069 -8.46291 -6.14356 0.62270 0.70195 1.34820 1.45819 1.51365 2.18513 2.75037 2.95994 3.05258 3.31571 3.53197 3.89325 3.97359 3.99234 4.03472 4.05348 4.13352 4.21400 4.26977 4.38122 4.41731 4.45383 4.54736 4.61954 4.64182 4.72268 4.76048 4.80573 4.83546 4.86035 4.93462 5.02417 5.10712 5.11659 5.13248 5.15560 5.17213 5.24239 5.32563 5.43470 5.59452 5.72969 5.82543 6.03686 6.15362 6.21505 6.28137 6.51855 6.98315 7.80156 8.77075 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.029672 B = 0.002632 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.425474 B =10636.908091 C =11186.748451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.115 3.885 4 C -0.151 4.151 5 C -0.059 4.059 6 C -0.242 4.242 7 C 0.114 3.886 8 O -0.233 6.233 9 C -0.413 4.413 10 H 0.101 0.899 11 C -0.024 4.024 12 N -0.922 5.922 13 Si 1.019 2.981 14 H -0.257 1.257 15 H -0.272 1.272 16 H -0.257 1.257 17 C -0.206 4.206 18 C -0.048 4.048 19 C 0.063 3.937 20 C 0.094 3.906 21 H 0.053 0.947 22 C -0.146 4.146 23 C -0.122 4.122 24 C -0.152 4.152 25 C 0.053 3.947 26 O -0.389 6.389 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.085 0.915 31 H 0.050 0.950 32 H 0.136 0.864 33 H 0.118 0.882 34 H 0.272 0.728 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.784 -13.502 22.030 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.012 4.012 4 C -0.153 4.153 5 C -0.078 4.078 6 C -0.261 4.261 7 C 0.064 3.936 8 O -0.140 6.140 9 C -0.489 4.489 10 H 0.118 0.882 11 C -0.221 4.221 12 N -0.560 5.560 13 Si 0.838 3.162 14 H -0.181 1.181 15 H -0.196 1.196 16 H -0.182 1.182 17 C -0.226 4.226 18 C -0.066 4.066 19 C -0.064 4.064 20 C 0.036 3.964 21 H 0.071 0.929 22 C -0.184 4.184 23 C -0.159 4.159 24 C -0.190 4.190 25 C -0.024 4.024 26 O -0.308 6.308 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.155 0.845 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.874 -13.751 21.091 26.380 hybrid contribution -0.679 0.979 -0.016 1.191 sum 7.195 -12.772 21.075 25.672 Atomic orbital electron populations 1.22381 0.87063 1.02011 1.00663 1.61841 1.08226 1.13297 1.43742 1.20869 1.00359 0.87378 0.92610 1.19562 0.95954 1.02912 0.96826 1.20904 0.96069 0.94867 0.95925 1.21219 1.01764 1.08460 0.94696 1.19917 0.94571 0.92366 0.86755 1.83954 1.42549 1.57649 1.29865 1.21770 1.02260 1.27945 0.96963 0.88185 1.26606 1.02905 0.99246 0.93374 1.70188 1.41040 1.44871 0.99926 0.84650 0.75435 0.77803 0.78333 1.18092 1.19623 1.18166 1.20424 0.96717 1.05412 1.00020 1.20764 0.99325 0.95821 0.90699 1.22175 0.94668 0.98035 0.91531 1.22185 0.96112 0.91155 0.86969 0.92949 1.22164 0.96925 1.01724 0.97607 1.21592 0.96320 0.99460 0.98558 1.22167 1.01834 0.99103 0.95903 1.22664 0.84009 0.98390 0.97334 1.88014 1.27911 1.62444 1.52473 0.92681 0.91250 0.94444 0.89664 0.93172 0.84649 0.86400 0.91854 0.87202 0.84460 0.91419 0.90181 0.89546 0.91127 0.90250 0.91712 0.91485 0.89774 0.89049 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.10 127.69 1.16 1.79 16 2 N -0.55 -13.18 4.65 -927.03 -4.31 -17.49 16 3 C 0.11 2.77 4.94 85.56 0.42 3.19 16 4 C -0.15 -4.91 4.89 -19.84 -0.10 -5.00 16 5 C -0.06 -2.08 7.94 22.25 0.18 -1.90 16 6 C -0.24 -10.79 9.14 22.39 0.20 -10.59 16 7 C 0.11 5.88 6.65 22.58 0.15 6.03 16 8 O -0.23 -14.44 9.76 -22.85 -0.22 -14.67 16 9 C -0.41 -24.55 9.45 67.92 0.64 -23.91 16 10 H 0.10 5.44 5.27 -2.91 -0.02 5.43 16 11 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 12 N -0.92 -57.65 13.67 21.61 0.30 -57.36 16 13 Si 1.02 43.46 29.55 68.60 2.03 45.48 16 14 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 16 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 17 C -0.21 -9.24 9.99 22.39 0.22 -9.02 16 18 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 19 C 0.06 1.17 4.67 86.30 0.40 1.57 16 20 C 0.09 1.72 2.75 30.62 0.08 1.81 16 21 H 0.05 1.01 6.65 -2.39 -0.02 0.99 16 22 C -0.15 -1.91 5.42 30.68 0.17 -1.74 16 23 C -0.12 -1.44 6.03 30.71 0.19 -1.26 16 24 C -0.15 -2.03 6.14 30.69 0.19 -1.84 16 25 C 0.05 0.95 6.84 72.01 0.49 1.45 16 26 O -0.39 -9.15 10.38 -148.98 -1.55 -10.70 16 27 H 0.05 1.55 6.10 -2.39 -0.01 1.53 16 28 H 0.07 1.51 8.00 -2.38 -0.02 1.49 16 29 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 1.86 6.51 -2.39 -0.02 1.85 16 31 H 0.05 1.06 8.06 -2.39 -0.02 1.04 16 32 H 0.14 3.85 8.02 -2.91 -0.02 3.83 16 33 H 0.12 5.33 5.69 -2.91 -0.02 5.31 16 34 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 35 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 36 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 37 H 0.07 0.98 7.99 -2.38 -0.02 0.96 16 38 H 0.08 1.47 7.84 -2.38 -0.02 1.45 16 39 H 0.09 0.86 8.14 -2.38 -0.02 0.85 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -72.60 366.29 2.28 -70.33 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: 0.95 Total: 26.25 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 5.09 Total: -41.84 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -4.02 Total: -74.85 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -1.77 Total: -25.37 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -72.60 2.28 -70.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264545700.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.559 kcal (2) G-P(sol) polarization free energy of solvation -72.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds