Wall clock time and date at job start Tue Mar 31 2020 10:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99746 * 2 1 4 4 C 1.50696 * 109.46885 * 293.95051 * 3 2 1 5 5 C 1.38298 * 119.93537 * 269.72700 * 4 3 2 6 6 C 1.38097 * 120.07394 * 179.73172 * 5 4 3 7 7 C 1.38883 * 119.92625 * 0.54547 * 6 5 4 8 8 O 1.35755 * 120.06688 * 179.75495 * 7 6 5 9 9 C 1.34830 * 116.99836 * 173.72267 * 8 7 6 10 10 H 1.08005 * 120.00230 * 5.17936 * 9 8 7 11 11 C 1.38647 * 119.99928 * 185.17575 * 9 8 7 12 12 N 1.31563 * 120.00073 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00196 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46855 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46885 * 119.99850 * 13 11 9 16 16 H 1.48502 * 109.47273 * 240.00326 * 13 11 9 17 17 C 1.38871 * 119.86415 * 359.72820 * 7 6 5 18 18 C 1.38102 * 119.93172 * 0.02562 * 17 7 6 19 19 C 1.46897 * 110.99989 * 123.95070 * 2 1 3 20 20 C 1.53002 * 109.47233 * 163.51763 * 19 2 1 21 21 H 1.08994 * 109.52112 * 56.83124 * 20 19 2 22 22 C 1.53178 * 109.52445 * 176.96543 * 20 19 2 23 23 C 1.53174 * 109.03540 * 176.94976 * 22 20 19 24 24 C 1.53092 * 109.21660 * 302.98317 * 23 22 20 25 25 O 1.43040 * 109.33879 * 57.57823 * 24 23 22 26 26 C 1.42895 * 114.13557 * 298.87938 * 25 24 23 27 27 H 1.08996 * 109.47070 * 302.90203 * 1 2 3 28 28 H 1.09003 * 109.47125 * 62.90183 * 1 2 3 29 29 H 1.08999 * 109.47002 * 182.90254 * 1 2 3 30 30 H 1.09001 * 109.47118 * 53.95653 * 3 2 1 31 31 H 1.09000 * 109.46655 * 173.95452 * 3 2 1 32 32 H 1.08004 * 119.96113 * 0.02562 * 5 4 3 33 33 H 1.07998 * 120.04038 * 180.27756 * 6 5 4 34 34 H 0.97002 * 119.99957 * 179.97438 * 12 11 9 35 35 H 1.08005 * 120.03941 * 179.97438 * 17 7 6 36 36 H 1.08005 * 119.96877 * 180.02562 * 18 17 7 37 37 H 1.09004 * 109.47213 * 43.51733 * 19 2 1 38 38 H 1.09004 * 109.47634 * 283.51706 * 19 2 1 39 39 H 1.08997 * 109.54761 * 57.07943 * 22 20 19 40 40 H 1.09005 * 109.61096 * 296.85922 * 22 20 19 41 41 H 1.08999 * 109.52366 * 62.92640 * 23 22 20 42 42 H 1.08998 * 109.52083 * 183.04962 * 23 22 20 43 43 H 1.08998 * 109.48319 * 177.62718 * 24 23 22 44 44 H 1.08999 * 109.47962 * 297.66015 * 24 23 22 45 45 H 1.09004 * 109.48508 * 301.18097 * 26 25 24 46 46 H 1.08998 * 109.48291 * 181.14832 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0470 -1.2985 5 6 2.4979 1.9687 -2.3779 6 6 2.1697 2.5821 -3.5708 7 6 0.9787 3.2877 -3.6824 8 8 0.6555 3.8959 -4.8523 9 6 -0.5699 4.4522 -4.9348 10 1 -1.2121 4.4753 -4.0668 11 6 -1.0056 4.9947 -6.1341 12 7 -0.2235 4.9662 -7.1916 13 14 -2.7036 5.7648 -6.2487 14 1 -3.3801 5.6701 -4.9301 15 1 -2.5745 7.1924 -6.6368 16 1 -3.5059 5.0447 -7.2700 17 6 0.1188 3.3693 -2.5950 18 6 0.4504 2.7495 -1.4063 19 6 1.9954 -0.7659 1.1376 20 6 3.4696 -1.0945 0.8928 21 1 4.0261 -0.1717 0.7291 22 6 4.0399 -1.8271 2.1112 23 6 5.4929 -2.2178 1.8241 24 6 5.5433 -3.0747 0.5565 25 8 4.9685 -2.3454 -0.5315 26 6 3.5968 -1.9941 -0.3394 27 1 -0.3633 0.5582 0.8628 28 1 -0.3633 0.4681 -0.9149 29 1 -0.3633 -1.0263 0.0520 30 1 1.5611 1.9273 0.8309 31 1 3.0797 1.3444 0.1082 32 1 3.4259 1.4232 -2.2892 33 1 2.8404 2.5168 -4.4148 34 1 -0.5285 5.3455 -8.0307 35 1 -0.8079 3.9177 -2.6785 36 1 -0.2181 2.8122 -0.5603 37 1 1.4299 -1.6915 1.2453 38 1 1.9014 -0.1746 2.0485 39 1 3.4525 -2.7245 2.3050 40 1 4.0035 -1.1723 2.9819 41 1 6.0904 -1.3177 1.6794 42 1 5.8898 -2.7871 2.6646 43 1 6.5796 -3.3201 0.3245 44 1 4.9790 -3.9935 0.7163 45 1 3.0070 -2.8988 -0.1915 46 1 3.2315 -1.4615 -1.2175 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264583616.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:33 Heat of formation + Delta-G solvation = -54.150319 kcal Electronic energy + Delta-G solvation = -24889.318848 eV Core-core repulsion = 21358.277134 eV Total energy + Delta-G solvation = -3531.041714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.76508 -39.05274 -37.65375 -36.05319 -33.91324 -32.32190 -31.72873 -30.13583 -29.91312 -27.00690 -26.09794 -25.13083 -25.06647 -23.15766 -21.89062 -21.34548 -20.46960 -19.90372 -17.94668 -16.93703 -16.40626 -16.24441 -15.56361 -15.36713 -15.06767 -14.79349 -14.54337 -14.47485 -13.96067 -13.81147 -13.52046 -13.38042 -13.11748 -12.80994 -12.65187 -12.60050 -12.38327 -12.00500 -11.86108 -11.69227 -11.49145 -11.38878 -11.27542 -10.97095 -10.81730 -10.69691 -10.54831 -10.46581 -10.40575 -10.37751 -9.57164 -9.29903 -8.81743 -8.26579 -8.11024 -7.13798 -6.42997 -4.01773 2.26209 2.31879 3.12851 3.14442 3.19951 3.79663 3.95232 3.98647 4.50822 4.60064 4.61755 4.71850 4.79243 4.98518 5.11996 5.16364 5.20880 5.24649 5.32529 5.33188 5.40168 5.42231 5.48127 5.57969 5.60041 5.63171 5.67124 5.76233 5.77648 5.83866 5.86260 5.94635 6.11429 6.12088 6.16931 6.25942 6.46632 6.75048 6.93737 7.02698 7.10310 7.13849 7.17335 7.31081 7.44046 7.48095 7.87047 8.02278 9.02829 9.73959 10.75229 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.028701 B = 0.002655 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.344666 B =10543.735166 C =11105.272852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.536 5.536 3 C 0.112 3.888 4 C -0.178 4.178 5 C -0.053 4.053 6 C -0.193 4.193 7 C 0.156 3.844 8 O -0.179 6.179 9 C -0.390 4.390 10 H 0.092 0.908 11 C 0.038 3.962 12 N -0.863 5.863 13 Si 0.940 3.060 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.235 4.235 18 C -0.065 4.065 19 C 0.060 3.940 20 C -0.118 4.118 21 H 0.081 0.919 22 C -0.117 4.117 23 C -0.155 4.155 24 C 0.059 3.941 25 O -0.384 6.384 26 C 0.074 3.926 27 H 0.020 0.980 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.269 0.731 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.046 0.954 45 H 0.044 0.956 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.976 -13.260 18.640 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.260 5.260 3 C -0.015 4.015 4 C -0.179 4.179 5 C -0.071 4.071 6 C -0.213 4.213 7 C 0.102 3.898 8 O -0.083 6.083 9 C -0.467 4.467 10 H 0.109 0.891 11 C -0.166 4.166 12 N -0.498 5.498 13 Si 0.765 3.235 14 H -0.192 1.192 15 H -0.202 1.202 16 H -0.201 1.201 17 C -0.254 4.254 18 C -0.084 4.084 19 C -0.068 4.068 20 C -0.137 4.137 21 H 0.099 0.901 22 C -0.155 4.155 23 C -0.193 4.193 24 C -0.018 4.018 25 O -0.302 6.302 26 C -0.002 4.002 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.334 -13.327 17.589 22.959 hybrid contribution -1.411 0.760 1.048 1.915 sum 4.923 -12.567 18.637 23.011 Atomic orbital electron populations 1.22412 0.87241 1.01149 1.01503 1.62031 1.07967 1.14283 1.41672 1.20865 0.99419 0.86715 0.94507 1.19048 0.97433 1.05719 0.95716 1.20460 0.98047 0.96950 0.91687 1.20227 0.97848 1.04459 0.98742 1.19397 0.93130 0.90477 0.86785 1.83983 1.33734 1.61351 1.29192 1.21357 0.90355 1.37005 0.97959 0.89099 1.25284 0.99686 0.97360 0.94241 1.70053 1.36153 1.42576 1.01025 0.85659 0.80340 0.78703 0.78780 1.19159 1.20176 1.20144 1.21111 1.02621 1.07872 0.93797 1.20581 0.95286 0.96228 0.96326 1.22090 0.94767 0.97950 0.91972 1.21803 0.96055 1.00057 0.95791 0.90069 1.21614 0.95766 1.00347 0.97815 1.22171 0.97346 1.01225 0.98518 1.22562 0.98830 0.93518 0.86927 1.88000 1.26369 1.74885 1.40981 1.22595 0.81612 0.97014 0.99002 0.96151 0.90198 0.92086 0.95120 0.90766 0.87061 0.86589 0.92102 0.85738 0.88071 0.91062 0.94760 0.91927 0.91668 0.91033 0.91150 0.89235 0.93524 0.93808 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.05 60.07 0.54 0.84 16 2 N -0.54 -6.58 4.14 -244.37 -1.01 -7.59 16 3 C 0.11 1.50 4.96 -4.98 -0.02 1.47 16 4 C -0.18 -3.00 4.88 -104.58 -0.51 -3.51 16 5 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 6 C -0.19 -4.15 9.99 -39.39 -0.39 -4.54 16 7 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 8 O -0.18 -5.16 9.76 0.03 0.00 -5.16 16 9 C -0.39 -10.98 9.49 30.88 0.29 -10.68 16 10 H 0.09 2.37 5.21 -52.48 -0.27 2.10 16 11 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 12 N -0.86 -25.51 13.67 55.48 0.76 -24.75 16 13 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 14 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 16 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 17 C -0.23 -5.09 9.16 -39.40 -0.36 -5.45 16 18 C -0.07 -1.18 8.03 -39.61 -0.32 -1.50 16 19 C 0.06 0.59 4.40 -3.82 -0.02 0.58 16 20 C -0.12 -1.14 2.40 -90.48 -0.22 -1.35 16 21 H 0.08 0.89 6.53 -51.93 -0.34 0.55 16 22 C -0.12 -0.91 5.31 -26.55 -0.14 -1.06 16 23 C -0.15 -1.17 6.13 -26.59 -0.16 -1.33 16 24 C 0.06 0.51 6.86 37.20 0.26 0.76 16 25 O -0.38 -4.61 10.77 -35.23 -0.38 -4.99 16 26 C 0.07 0.82 5.97 37.21 0.22 1.04 16 27 H 0.02 0.23 8.11 -51.93 -0.42 -0.19 16 28 H 0.08 1.13 6.36 -51.93 -0.33 0.80 16 29 H 0.06 0.64 7.93 -51.93 -0.41 0.23 16 30 H 0.03 0.40 8.04 -51.93 -0.42 -0.02 16 31 H 0.07 0.95 6.33 -51.93 -0.33 0.62 16 32 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 33 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.12 2.72 5.65 -52.48 -0.30 2.43 16 36 H 0.10 1.59 8.03 -52.48 -0.42 1.17 16 37 H 0.07 0.64 7.85 -51.93 -0.41 0.24 16 38 H 0.03 0.33 8.05 -51.93 -0.42 -0.09 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.11 1.40 7.78 -51.93 -0.40 1.00 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -30.56 364.96 -9.14 -39.70 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -7.41 Total: 3.25 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -1.57 Total: -21.58 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: -0.25 Total: -32.34 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.38 Total: -10.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.56 -9.14 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264583616.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.451 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds