Wall clock time and date at job start Tue Mar 31 2020 09:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42894 * 109.47082 * 2 1 4 4 C 1.42907 * 114.00059 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47189 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.64326 * 56.70086 * 5 4 3 7 7 C 1.54600 * 110.72790 * 293.54928 * 5 4 3 8 8 C 1.53991 * 105.13673 * 219.68509 * 7 5 4 9 9 N 1.47901 * 107.06219 * 358.77066 * 8 7 5 10 10 C 1.46903 * 110.99898 * 145.84217 * 9 8 7 11 11 C 1.50692 * 109.47191 * 290.12960 * 10 9 8 12 12 C 1.38298 * 119.93172 * 269.72401 * 11 10 9 13 13 C 1.38099 * 120.06961 * 179.72920 * 12 11 10 14 14 C 1.38875 * 119.93029 * 0.56853 * 13 12 11 15 15 O 1.35753 * 120.07063 * 179.68212 * 14 13 12 16 16 C 1.34826 * 117.00320 * 174.48865 * 15 14 13 17 17 H 1.07999 * 119.99704 * 5.05953 * 16 15 14 18 18 C 1.38653 * 120.00111 * 185.06162 * 16 15 14 19 19 N 1.31554 * 119.99725 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00195 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47003 * 90.00049 * 20 18 16 22 22 H 1.48501 * 109.47423 * 210.00399 * 20 18 16 23 23 H 1.48498 * 109.46949 * 330.00356 * 20 18 16 24 24 C 1.38883 * 119.86345 * 359.70712 * 14 13 12 25 25 C 1.38094 * 119.92842 * 359.97438 * 24 14 13 26 26 C 1.48536 * 105.81693 * 25.33265 * 9 8 7 27 27 H 1.08996 * 109.47254 * 60.00458 * 1 2 3 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47324 * 299.99992 * 1 2 3 30 30 H 1.09006 * 109.46921 * 239.99825 * 2 1 3 31 31 H 1.08999 * 109.47000 * 119.99993 * 2 1 3 32 32 H 1.08995 * 109.47224 * 299.99995 * 4 3 2 33 33 H 1.09000 * 109.47040 * 59.99852 * 4 3 2 34 34 H 1.09002 * 110.30634 * 338.59995 * 7 5 4 35 35 H 1.08994 * 110.30888 * 100.76584 * 7 5 4 36 36 H 1.09000 * 109.91436 * 118.13035 * 8 7 5 37 37 H 1.09003 * 109.91525 * 239.41775 * 8 7 5 38 38 H 1.09003 * 109.46687 * 50.12941 * 10 9 8 39 39 H 1.08995 * 109.46702 * 170.12551 * 10 9 8 40 40 H 1.08009 * 119.96463 * 359.97438 * 12 11 10 41 41 H 1.08009 * 120.03403 * 180.27232 * 13 12 11 42 42 H 0.97004 * 119.99850 * 179.97438 * 19 18 16 43 43 H 1.07992 * 120.03381 * 180.02562 * 24 14 13 44 44 H 1.08001 * 119.97036 * 179.97438 * 25 24 14 45 45 H 1.09003 * 110.66402 * 202.35482 * 26 9 8 46 46 H 1.08994 * 110.66620 * 79.23036 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9383 -0.0001 6 1 3.3830 3.4545 0.8519 7 6 3.4089 3.6152 -1.3262 8 6 4.5735 4.5588 -1.6791 9 7 5.5720 4.4403 -0.5945 10 6 6.9372 4.5822 -1.1180 11 6 7.2853 3.3732 -1.9475 12 6 7.8809 2.2762 -1.3522 13 6 8.1960 1.1646 -2.1087 14 6 7.9249 1.1537 -3.4707 15 8 8.2394 0.0650 -4.2181 16 6 7.8469 0.0739 -5.5080 17 1 7.3806 0.9545 -5.9244 18 6 8.0418 -1.0476 -6.2997 19 7 7.6592 -1.0387 -7.5583 20 14 8.8488 -2.5705 -5.5796 21 1 7.8059 -3.4605 -5.0091 22 1 9.5855 -3.2925 -6.6479 23 1 9.7967 -2.1692 -4.5092 24 6 7.3320 2.2592 -4.0666 25 6 7.0133 3.3651 -3.3035 26 6 5.3668 3.0944 -0.0006 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8333 0.9767 0.8908 33 1 3.8340 0.9764 -0.8891 34 1 3.2780 2.8669 -2.1080 35 1 2.4895 4.1840 -1.1882 36 1 5.0188 4.2603 -2.6281 37 1 4.2133 5.5858 -1.7417 38 1 6.9977 5.4773 -1.7370 39 1 7.6378 4.6669 -0.2873 40 1 8.0962 2.2872 -0.2939 41 1 8.6571 0.3064 -1.6424 42 1 7.7959 -1.8231 -8.1124 43 1 7.1196 2.2536 -5.1254 44 1 6.5525 4.2253 -3.7663 45 1 5.7574 3.0591 1.0164 46 1 5.8311 2.3263 -0.6190 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267041363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:35 Heat of formation + Delta-G solvation = -46.213830 kcal Electronic energy + Delta-G solvation = -25304.145862 eV Core-core repulsion = 21773.448301 eV Total energy + Delta-G solvation = -3530.697562 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.99432 -38.84667 -37.86398 -36.44306 -33.28323 -32.40999 -31.26946 -30.53687 -29.52192 -28.70494 -26.21047 -25.05119 -23.93380 -22.90340 -22.17083 -21.17541 -20.11167 -20.08899 -17.95495 -17.34406 -16.85594 -16.30448 -15.80745 -15.65254 -14.97143 -14.77109 -14.21836 -14.17372 -13.97576 -13.77856 -13.66149 -13.48750 -12.98184 -12.83244 -12.70133 -12.49529 -12.30049 -12.07634 -11.70650 -11.57231 -11.34330 -11.28746 -11.15926 -11.08661 -10.98208 -10.78471 -10.75075 -10.67935 -10.39817 -10.22255 -9.64954 -9.46213 -8.93367 -8.35490 -8.25081 -7.40196 -6.48577 -4.15561 2.01725 2.08525 3.16388 3.20049 3.34420 3.51185 4.17141 4.18372 4.41672 4.71255 4.77394 4.80639 4.89604 4.92449 5.03046 5.08152 5.22430 5.22989 5.31158 5.37911 5.42265 5.46191 5.54510 5.58043 5.64469 5.67662 5.70169 5.74866 5.88026 5.93668 5.97288 6.02672 6.02839 6.09688 6.20329 6.24192 6.34695 6.47822 6.68150 6.90080 6.94903 7.11029 7.15594 7.18082 7.23100 7.52130 7.72019 7.96085 8.86339 9.47841 10.58892 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.004169 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.227825 B = 6713.934209 C = 8331.655974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.388 6.388 4 C 0.070 3.930 5 C -0.087 4.087 6 H 0.085 0.915 7 C -0.117 4.117 8 C 0.024 3.976 9 N -0.508 5.508 10 C 0.097 3.903 11 C -0.212 4.212 12 C -0.065 4.065 13 C -0.194 4.194 14 C 0.162 3.838 15 O -0.216 6.216 16 C -0.391 4.391 17 H 0.106 0.894 18 C 0.064 3.936 19 N -0.877 5.877 20 Si 0.905 3.095 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.260 1.260 24 C -0.221 4.221 25 C -0.063 4.063 26 C 0.031 3.969 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.280 0.720 43 H 0.132 0.868 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.118 6.096 14.918 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.308 6.308 4 C -0.007 4.007 5 C -0.106 4.106 6 H 0.103 0.897 7 C -0.155 4.155 8 C -0.104 4.104 9 N -0.231 5.231 10 C -0.031 4.031 11 C -0.214 4.214 12 C -0.083 4.083 13 C -0.214 4.214 14 C 0.109 3.891 15 O -0.121 6.121 16 C -0.467 4.467 17 H 0.124 0.876 18 C -0.139 4.139 19 N -0.515 5.515 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.184 1.184 24 C -0.241 4.241 25 C -0.081 4.081 26 C -0.097 4.097 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.150 0.850 44 H 0.127 0.873 45 H 0.095 0.905 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.196 6.356 15.134 18.347 hybrid contribution 0.601 -1.576 -0.706 1.829 sum -7.595 4.780 14.428 16.991 Atomic orbital electron populations 1.21729 0.93880 1.02117 1.02997 1.22447 0.95461 0.84033 1.00162 1.87857 1.21258 1.26182 1.95456 1.22507 0.81054 0.96716 1.00389 1.22001 0.95639 0.93839 0.99132 0.89686 1.22338 0.98013 0.98393 0.96777 1.22995 0.92756 0.99753 0.94856 1.65170 1.03245 1.27688 1.26957 1.21095 0.89855 0.95176 0.96965 1.19947 1.08497 0.98216 0.94735 1.20514 0.97107 0.92483 0.98242 1.20212 1.09481 1.00150 0.91508 1.19133 0.92314 0.87105 0.90510 1.83571 1.68726 1.36167 1.23609 1.20766 1.40600 1.03155 0.82140 0.87639 1.24469 0.96424 0.98385 0.94639 1.69644 1.45037 1.31100 1.05698 0.86187 0.80124 0.81472 0.79166 1.19876 1.20679 1.18358 1.21275 1.07017 0.94452 1.01306 1.20694 0.97439 0.97063 0.92944 1.23386 0.94141 0.91833 1.00340 0.91833 0.91229 0.92027 0.93267 0.93598 0.93365 0.92901 0.91410 0.91259 0.92324 0.90893 0.90774 0.90528 0.86959 0.86566 0.90970 0.85003 0.87348 0.90465 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.58 6.66 37.16 0.25 0.83 16 3 O -0.39 -4.94 10.19 -35.23 -0.36 -5.30 16 4 C 0.07 0.86 5.26 37.16 0.20 1.05 16 5 C -0.09 -1.05 3.35 -88.76 -0.30 -1.35 16 6 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 7 C -0.12 -1.47 6.36 -25.37 -0.16 -1.63 16 8 C 0.02 0.31 6.46 -2.76 -0.02 0.29 16 9 N -0.51 -6.56 5.54 -231.90 -1.28 -7.84 16 10 C 0.10 1.26 5.69 -4.98 -0.03 1.23 16 11 C -0.21 -3.29 3.95 -104.58 -0.41 -3.71 16 12 C -0.06 -1.03 7.50 -39.61 -0.30 -1.33 16 13 C -0.19 -3.69 9.99 -39.40 -0.39 -4.08 16 14 C 0.16 3.63 6.65 -39.11 -0.26 3.37 16 15 O -0.22 -5.59 8.59 0.05 0.00 -5.59 16 16 C -0.39 -10.86 9.95 30.89 0.31 -10.55 16 17 H 0.11 3.00 5.44 -52.49 -0.29 2.71 16 18 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 19 N -0.88 -25.03 13.96 55.48 0.77 -24.25 16 20 Si 0.91 21.36 28.62 -169.99 -4.86 16.49 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 24 C -0.22 -4.63 9.17 -39.40 -0.36 -4.99 16 25 C -0.06 -1.08 8.18 -39.61 -0.32 -1.41 16 26 C 0.03 0.39 5.51 -1.90 -0.01 0.38 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 34 H 0.07 0.93 7.80 -51.93 -0.41 0.53 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.82 4.85 -51.93 -0.25 0.56 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 39 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.12 2.07 8.06 -52.48 -0.42 1.65 16 42 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.13 2.94 5.64 -52.49 -0.30 2.64 16 44 H 0.11 1.66 7.16 -52.49 -0.38 1.29 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 1.02 4.77 -51.93 -0.25 0.78 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -28.76 364.34 -9.10 -37.86 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.33 Total: 4.29 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -1.53 Total: -21.14 kcal Atomic # 7 Polarization: -31.58 SS G_CDS: -0.51 Total: -32.09 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.36 Total: -10.89 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.86 Total: 16.49 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.76 -9.10 -37.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267041363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.357 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds