Wall clock time and date at job start Tue Mar 31 2020 08:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47155 * 2 1 4 4 C 1.46502 * 120.00083 * 251.99662 * 3 2 1 5 5 C 1.50699 * 109.47215 * 270.00399 * 4 3 2 6 6 H 1.07998 * 120.00034 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99747 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00129 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00063 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47440 * 119.99516 * 9 7 5 12 12 H 1.48492 * 109.47220 * 240.00129 * 9 7 5 13 13 C 1.34778 * 120.00048 * 72.00282 * 3 2 1 14 14 O 1.21583 * 119.99858 * 188.69382 * 13 3 2 15 15 C 1.47601 * 119.99678 * 8.68928 * 13 3 2 16 16 C 1.39734 * 120.08983 * 343.36398 * 15 13 3 17 17 C 1.37708 * 119.90740 * 180.27769 * 16 15 13 18 18 C 1.38999 * 120.08873 * 359.44583 * 17 16 15 19 19 O 1.35714 * 119.90935 * 180.29769 * 18 17 16 20 20 C 1.42898 * 116.99547 * 174.34574 * 19 18 17 21 21 C 1.53003 * 109.47199 * 64.19950 * 20 19 18 22 22 C 1.52997 * 109.46991 * 184.19568 * 20 19 18 23 23 C 1.53003 * 109.47606 * 304.19791 * 20 19 18 24 24 C 1.38994 * 120.17545 * 0.28443 * 18 17 16 25 25 C 1.37701 * 120.08891 * 359.97438 * 24 18 17 26 26 H 1.09000 * 109.46566 * 299.99973 * 1 2 3 27 27 H 1.09002 * 109.47218 * 59.99517 * 1 2 3 28 28 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46987 * 239.99948 * 2 1 3 30 30 H 1.09002 * 109.47218 * 120.00483 * 2 1 3 31 31 H 1.09005 * 109.46614 * 30.00143 * 4 3 2 32 32 H 1.08995 * 109.47012 * 149.99651 * 4 3 2 33 33 H 0.97000 * 119.99961 * 179.97438 * 8 7 5 34 34 H 1.07995 * 120.04436 * 0.02562 * 16 15 13 35 35 H 1.07995 * 119.95160 * 179.72938 * 17 16 15 36 36 H 1.08997 * 109.47149 * 69.98786 * 21 20 19 37 37 H 1.09001 * 109.47513 * 189.99206 * 21 20 19 38 38 H 1.09005 * 109.46661 * 309.99732 * 21 20 19 39 39 H 1.08998 * 109.46780 * 60.00248 * 22 20 19 40 40 H 1.08999 * 109.47533 * 180.02562 * 22 20 19 41 41 H 1.09004 * 109.47127 * 300.00498 * 22 20 19 42 42 H 1.09001 * 109.46711 * 51.72015 * 23 20 19 43 43 H 1.08998 * 109.46885 * 171.71371 * 23 20 19 44 44 H 1.09000 * 109.46815 * 291.72307 * 23 20 19 45 45 H 1.07999 * 119.95672 * 180.02562 * 24 18 17 46 46 H 1.08007 * 120.04190 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6323 1.9412 -1.2066 5 6 4.1167 1.6826 -1.1813 6 1 4.5587 1.1545 -0.3494 7 6 4.9105 2.1204 -2.2202 8 7 4.3721 2.7631 -3.2334 9 14 6.7506 1.8007 -2.1885 10 1 7.1039 1.0648 -0.9480 11 1 7.1325 0.9888 -3.3719 12 1 7.4785 3.0946 -2.2201 13 6 1.9030 2.1368 1.1101 14 8 2.1603 3.3243 1.0666 15 6 1.4642 1.5226 2.3785 16 6 0.8420 0.2714 2.3726 17 6 0.4290 -0.2956 3.5576 18 6 0.6405 0.3698 4.7595 19 8 0.2373 -0.1951 5.9258 20 6 0.5953 0.4819 7.1322 21 6 -0.0932 1.8477 7.1742 22 6 0.1497 -0.3509 8.3358 23 6 2.1125 0.6740 7.1785 24 6 1.2640 1.6120 4.7701 25 6 1.6752 2.1881 3.5889 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.1964 1.4703 -2.0879 32 1 2.4510 3.0154 -1.2415 33 1 4.9306 3.0714 -3.9641 34 1 0.6817 -0.2484 1.4396 35 1 -0.0559 -1.2606 3.5535 36 1 -1.1646 1.7101 7.3199 37 1 0.3132 2.4344 7.9980 38 1 0.0812 2.3714 6.2342 39 1 0.6402 -1.3238 8.3060 40 1 0.4222 0.1657 9.2561 41 1 -0.9312 -0.4877 8.3028 42 1 2.4484 1.1379 6.2511 43 1 2.3719 1.3159 8.0204 44 1 2.5979 -0.2947 7.2969 45 1 1.4270 2.1257 5.7060 46 1 2.1601 3.1532 3.5980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267440483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:57 Heat of formation + Delta-G solvation = 28.699270 kcal Electronic energy + Delta-G solvation = -25637.891475 eV Core-core repulsion = 22110.442389 eV Total energy + Delta-G solvation = -3527.449086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.05461 -39.72826 -37.09686 -35.83315 -34.35078 -33.10062 -31.48247 -30.16211 -29.94592 -27.73018 -27.66613 -26.91107 -23.85765 -23.05390 -22.87508 -21.85599 -20.57488 -19.03712 -17.58235 -17.06616 -16.41839 -16.05621 -15.62208 -15.52309 -15.11629 -14.73359 -14.40131 -14.07430 -13.91196 -13.76311 -13.69171 -13.20793 -12.92627 -12.64154 -12.52097 -12.31451 -12.23516 -12.14069 -11.98482 -11.83163 -11.64563 -11.34621 -11.15424 -11.05878 -10.84830 -10.77770 -10.64351 -10.48135 -10.19837 -9.99294 -9.61059 -8.94932 -8.78229 -8.43477 -8.04922 -7.62976 -6.04102 -4.09115 1.21177 1.45484 3.02414 3.30042 3.36202 3.38514 3.42938 3.92306 4.20503 4.40355 4.45292 4.46324 4.60439 4.80013 4.89667 5.02988 5.09298 5.19686 5.20724 5.22840 5.30376 5.36566 5.37717 5.44582 5.47679 5.55288 5.59088 5.66748 5.71626 5.81364 5.90482 5.92838 5.97087 6.10134 6.14069 6.31968 6.39479 6.42559 6.60637 6.77974 7.10434 7.40473 7.47137 7.56514 7.93098 8.23747 8.42219 8.90751 9.10592 9.56293 11.03834 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.003337 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.754962 B = 8389.234129 C = 8872.304069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.087 3.913 3 N -0.591 5.591 4 C 0.244 3.756 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.552 3.448 14 O -0.544 6.544 15 C -0.161 4.161 16 C -0.121 4.121 17 C -0.170 4.170 18 C 0.147 3.853 19 O -0.307 6.307 20 C 0.108 3.892 21 C -0.202 4.202 22 C -0.137 4.137 23 C -0.206 4.206 24 C -0.240 4.240 25 C -0.029 4.029 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.208 0.792 35 H 0.130 0.870 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.153 0.847 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 -8.150 19.697 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.036 4.036 3 N -0.321 5.321 4 C 0.125 3.875 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.340 3.660 14 O -0.423 6.423 15 C -0.164 4.164 16 C -0.138 4.138 17 C -0.188 4.188 18 C 0.101 3.899 19 O -0.221 6.221 20 C 0.071 3.929 21 C -0.259 4.259 22 C -0.194 4.194 23 C -0.263 4.263 24 C -0.258 4.258 25 C -0.048 4.048 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.223 0.777 35 H 0.148 0.852 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.170 0.830 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.165 -7.608 19.503 23.271 hybrid contribution 1.191 0.021 0.119 1.197 sum -8.973 -7.586 19.621 22.871 Atomic orbital electron populations 1.22839 0.96786 1.02723 1.03760 1.22017 0.92779 0.85297 1.03556 1.48099 1.58294 1.11721 1.14008 1.19355 0.92343 0.95885 0.79914 1.21506 0.92487 1.36946 1.05736 0.92332 1.24938 0.98920 0.94936 0.95307 1.69943 1.35728 1.38267 1.09357 0.86443 0.85104 0.78027 0.77867 1.19779 1.20939 1.20874 1.18053 0.78247 0.86344 0.83307 1.90722 1.51284 1.15083 1.85175 1.20141 1.05091 0.96618 0.94567 1.24132 0.93371 0.94832 1.01435 1.20453 1.07021 1.01624 0.89722 1.19213 0.93206 0.91596 0.85865 1.86088 1.73302 1.50507 1.12229 1.21776 0.94708 0.92708 0.83750 1.22910 1.01751 0.96739 1.04476 1.21790 1.02381 1.00164 0.95063 1.22965 0.94930 1.03662 1.04746 1.21808 1.07113 0.96969 0.99906 1.21113 0.94407 0.98797 0.90498 0.90257 0.91262 0.90988 0.89154 0.90051 0.94866 0.93544 0.92758 0.77678 0.85213 0.91507 0.90982 0.89482 0.91531 0.90530 0.91551 0.89171 0.90972 0.91500 0.82998 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.61 8.49 37.16 0.32 -2.30 16 2 C 0.09 1.41 5.73 -4.04 -0.02 1.39 16 3 N -0.59 -12.83 2.54 -196.43 -0.50 -13.33 16 4 C 0.24 6.44 5.17 -5.19 -0.03 6.42 16 5 C -0.53 -15.06 9.39 -34.44 -0.32 -15.39 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 13 C 0.55 12.28 7.33 -12.44 -0.09 12.19 16 14 O -0.54 -14.26 16.02 5.29 0.08 -14.18 16 15 C -0.16 -2.85 5.75 -104.96 -0.60 -3.45 16 16 C -0.12 -1.75 5.90 -39.22 -0.23 -1.98 16 17 C -0.17 -2.22 9.97 -39.49 -0.39 -2.61 16 18 C 0.15 1.93 6.13 -39.02 -0.24 1.69 16 19 O -0.31 -3.67 9.78 -18.85 -0.18 -3.85 16 20 C 0.11 0.99 1.11 -90.62 -0.10 0.89 16 21 C -0.20 -1.68 8.14 37.16 0.30 -1.38 16 22 C -0.14 -0.96 8.82 37.16 0.33 -0.63 16 23 C -0.21 -1.81 8.06 37.16 0.30 -1.51 16 24 C -0.24 -3.16 5.81 -39.50 -0.23 -3.39 16 25 C -0.03 -0.47 9.58 -39.22 -0.38 -0.84 16 26 H 0.08 1.05 5.10 -51.93 -0.26 0.78 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.45 7.92 -51.93 -0.41 1.04 16 30 H 0.08 1.19 5.44 -51.93 -0.28 0.91 16 31 H 0.03 0.88 8.03 -51.93 -0.42 0.46 16 32 H 0.05 1.39 7.32 -51.93 -0.38 1.01 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.21 2.67 1.51 -122.97 -0.19 2.48 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.07 0.54 8.11 -51.93 -0.42 0.12 16 37 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 38 H 0.09 0.84 4.58 -51.93 -0.24 0.60 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.92 4.37 -51.93 -0.23 0.70 16 43 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 44 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 45 H 0.15 1.65 3.40 -52.49 -0.18 1.47 16 46 H 0.13 2.18 7.74 -52.48 -0.41 1.77 16 LS Contribution 355.93 15.07 5.36 5.36 Total: -1.00 -33.77 355.93 -7.76 -41.53 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.75 Total: 2.72 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.49 Total: -9.25 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.24 Total: -39.23 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.10 Total: -18.03 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.77 -7.76 -41.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267440483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.225 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds