Wall clock time and date at job start Tue Mar 31 2020 08:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47155 * 2 1 4 4 C 1.46502 * 120.00083 * 251.99662 * 3 2 1 5 5 C 1.50699 * 109.47215 * 270.00399 * 4 3 2 6 6 H 1.07998 * 120.00034 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99747 * 179.97438 * 5 4 3 8 8 N 1.31509 * 120.00129 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00063 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47106 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47440 * 119.99516 * 9 7 5 12 12 H 1.48492 * 109.47220 * 240.00129 * 9 7 5 13 13 C 1.34778 * 120.00048 * 72.00282 * 3 2 1 14 14 O 1.21583 * 119.99858 * 188.69382 * 13 3 2 15 15 C 1.47601 * 119.99678 * 8.68928 * 13 3 2 16 16 C 1.39734 * 120.08983 * 343.36398 * 15 13 3 17 17 C 1.37708 * 119.90740 * 180.27769 * 16 15 13 18 18 C 1.38999 * 120.08873 * 359.44583 * 17 16 15 19 19 O 1.35714 * 119.90935 * 180.29769 * 18 17 16 20 20 C 1.42898 * 116.99547 * 174.34574 * 19 18 17 21 21 C 1.53003 * 109.47199 * 64.19950 * 20 19 18 22 22 C 1.52997 * 109.46991 * 184.19568 * 20 19 18 23 23 C 1.53003 * 109.47606 * 304.19791 * 20 19 18 24 24 C 1.38994 * 120.17545 * 0.28443 * 18 17 16 25 25 C 1.37701 * 120.08891 * 359.97438 * 24 18 17 26 26 H 1.09000 * 109.46566 * 299.99973 * 1 2 3 27 27 H 1.09002 * 109.47218 * 59.99517 * 1 2 3 28 28 H 1.08997 * 109.47179 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46987 * 239.99948 * 2 1 3 30 30 H 1.09002 * 109.47218 * 120.00483 * 2 1 3 31 31 H 1.09005 * 109.46614 * 30.00143 * 4 3 2 32 32 H 1.08995 * 109.47012 * 149.99651 * 4 3 2 33 33 H 0.97000 * 119.99961 * 179.97438 * 8 7 5 34 34 H 1.07995 * 120.04436 * 0.02562 * 16 15 13 35 35 H 1.07995 * 119.95160 * 179.72938 * 17 16 15 36 36 H 1.08997 * 109.47149 * 69.98786 * 21 20 19 37 37 H 1.09001 * 109.47513 * 189.99206 * 21 20 19 38 38 H 1.09005 * 109.46661 * 309.99732 * 21 20 19 39 39 H 1.08998 * 109.46780 * 60.00248 * 22 20 19 40 40 H 1.08999 * 109.47533 * 180.02562 * 22 20 19 41 41 H 1.09004 * 109.47127 * 300.00498 * 22 20 19 42 42 H 1.09001 * 109.46711 * 51.72015 * 23 20 19 43 43 H 1.08998 * 109.46885 * 171.71371 * 23 20 19 44 44 H 1.09000 * 109.46815 * 291.72307 * 23 20 19 45 45 H 1.07999 * 119.95672 * 180.02562 * 24 18 17 46 46 H 1.08007 * 120.04190 * 180.02562 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6323 1.9412 -1.2066 5 6 4.1167 1.6826 -1.1813 6 1 4.5587 1.1545 -0.3494 7 6 4.9105 2.1204 -2.2202 8 7 4.3721 2.7631 -3.2334 9 14 6.7506 1.8007 -2.1885 10 1 7.1039 1.0648 -0.9480 11 1 7.1325 0.9888 -3.3719 12 1 7.4785 3.0946 -2.2201 13 6 1.9030 2.1368 1.1101 14 8 2.1603 3.3243 1.0666 15 6 1.4642 1.5226 2.3785 16 6 0.8420 0.2714 2.3726 17 6 0.4290 -0.2956 3.5576 18 6 0.6405 0.3698 4.7595 19 8 0.2373 -0.1951 5.9258 20 6 0.5953 0.4819 7.1322 21 6 -0.0932 1.8477 7.1742 22 6 0.1497 -0.3509 8.3358 23 6 2.1125 0.6740 7.1785 24 6 1.2640 1.6120 4.7701 25 6 1.6752 2.1881 3.5889 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.1964 1.4703 -2.0879 32 1 2.4510 3.0154 -1.2415 33 1 4.9306 3.0714 -3.9641 34 1 0.6817 -0.2484 1.4396 35 1 -0.0559 -1.2606 3.5535 36 1 -1.1646 1.7101 7.3199 37 1 0.3132 2.4344 7.9980 38 1 0.0812 2.3714 6.2342 39 1 0.6402 -1.3238 8.3060 40 1 0.4222 0.1657 9.2561 41 1 -0.9312 -0.4877 8.3028 42 1 2.4484 1.1379 6.2511 43 1 2.3719 1.3159 8.0204 44 1 2.5979 -0.2947 7.2969 45 1 1.4270 2.1257 5.7060 46 1 2.1601 3.1532 3.5980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267440483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:55 Heat of formation + Delta-G solvation = 8.016951 kcal Electronic energy + Delta-G solvation = -25638.788327 eV Core-core repulsion = 22110.442389 eV Total energy + Delta-G solvation = -3528.345939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -42.13363 -41.06718 -38.41938 -37.40116 -35.25196 -35.04071 -33.06338 -31.38950 -31.13782 -29.09464 -28.37967 -28.15367 -25.51402 -24.52444 -24.04201 -23.22833 -21.44075 -20.55483 -18.70681 -18.50396 -18.33390 -17.49057 -16.74399 -16.54146 -16.43521 -16.26445 -16.06993 -15.28928 -14.99663 -14.84730 -14.68913 -14.57306 -14.30282 -13.94524 -13.63882 -13.36895 -13.22707 -13.13875 -13.07177 -13.03157 -12.88882 -12.72013 -12.67403 -12.59483 -12.26314 -12.09207 -12.01343 -11.72623 -11.55870 -11.52672 -11.18206 -10.67631 -10.64148 -9.90106 -9.51172 -9.12099 -8.23815 -6.39452 -0.02237 0.34290 1.35741 1.38209 1.50359 1.92021 2.15928 2.28896 2.42857 2.85457 3.05329 3.62523 3.68696 3.76567 3.81112 3.87221 3.96637 3.99267 4.15045 4.27753 4.42123 4.51866 4.56228 4.58533 4.64397 4.74911 4.82442 4.83546 4.86081 4.90707 4.92630 4.99819 5.03807 5.15970 5.17347 5.20489 5.27438 5.28492 5.32928 5.38030 5.44996 5.56133 5.68339 5.84338 6.04176 6.44010 6.67588 6.73637 7.24805 7.41902 8.83430 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.003337 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.754962 B = 8389.234129 C = 8872.304069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.078 3.922 3 N -0.596 5.596 4 C 0.259 3.741 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.970 3.030 10 H -0.268 1.268 11 H -0.266 1.266 12 H -0.281 1.281 13 C 0.543 3.457 14 O -0.603 6.603 15 C -0.190 4.190 16 C -0.111 4.111 17 C -0.166 4.166 18 C 0.155 3.845 19 O -0.310 6.310 20 C 0.098 3.902 21 C -0.202 4.202 22 C -0.134 4.134 23 C -0.206 4.206 24 C -0.228 4.228 25 C -0.044 4.044 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.028 0.972 32 H -0.002 1.002 33 H 0.268 0.732 34 H 0.222 0.778 35 H 0.162 0.838 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.175 0.825 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 -10.834 22.266 26.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.044 4.044 3 N -0.326 5.326 4 C 0.138 3.862 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.794 3.206 10 H -0.192 1.192 11 H -0.191 1.191 12 H -0.207 1.207 13 C 0.334 3.666 14 O -0.487 6.487 15 C -0.193 4.193 16 C -0.127 4.127 17 C -0.185 4.185 18 C 0.109 3.891 19 O -0.224 6.224 20 C 0.061 3.939 21 C -0.259 4.259 22 C -0.191 4.191 23 C -0.263 4.263 24 C -0.246 4.246 25 C -0.063 4.063 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.138 0.862 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.046 0.954 32 H 0.016 0.984 33 H 0.077 0.923 34 H 0.237 0.763 35 H 0.179 0.821 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.085 0.915 45 H 0.192 0.808 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.571 -10.347 22.089 26.585 hybrid contribution 1.230 0.835 -0.536 1.580 sum -9.341 -9.512 21.553 25.343 Atomic orbital electron populations 1.22770 0.93834 1.05538 1.03073 1.22436 0.95199 0.82164 1.04613 1.48114 1.57995 1.13929 1.12522 1.18829 0.92182 0.93263 0.81932 1.21740 0.93618 1.37292 1.05778 0.92882 1.25876 1.04065 0.94388 0.94754 1.70060 1.37726 1.38874 1.10026 0.85334 0.78696 0.78039 0.78532 1.19182 1.19143 1.20712 1.18845 0.77257 0.85809 0.84712 1.90665 1.54151 1.17662 1.86199 1.19850 1.08391 0.98612 0.92437 1.24181 0.92415 0.93306 1.02824 1.20769 1.06226 1.02572 0.88899 1.19375 0.91864 0.91154 0.86754 1.86109 1.72940 1.50858 1.12528 1.22135 0.95066 0.93442 0.83247 1.22906 1.02143 0.96357 1.04450 1.21828 1.02498 1.00058 0.94746 1.22963 0.94636 1.04003 1.04711 1.21993 1.05962 0.97098 0.99547 1.21095 0.95353 0.98596 0.91240 0.90350 0.92554 0.86249 0.89237 0.87821 0.95384 0.98399 0.92309 0.76268 0.82081 0.91137 0.88850 0.91090 0.91545 0.88375 0.91354 0.90943 0.88796 0.91489 0.80798 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.68 8.49 71.98 0.61 -4.07 16 2 C 0.08 2.47 5.73 86.38 0.49 2.96 16 3 N -0.60 -27.12 2.54 -893.64 -2.27 -29.39 16 4 C 0.26 14.54 5.17 85.63 0.44 14.98 16 5 C -0.55 -32.34 9.39 25.60 0.24 -32.10 16 6 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.48 5.46 84.66 0.46 0.95 16 8 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 9 Si 0.97 45.57 29.54 68.60 2.03 47.59 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.54 25.59 7.33 86.71 0.64 26.22 16 14 O -0.60 -34.33 16.02 -3.98 -0.06 -34.39 16 15 C -0.19 -6.87 5.75 -20.08 -0.12 -6.98 16 16 C -0.11 -3.03 5.90 22.51 0.13 -2.90 16 17 C -0.17 -3.84 9.97 22.33 0.22 -3.62 16 18 C 0.16 3.71 6.13 22.63 0.14 3.84 16 19 O -0.31 -6.45 9.78 -90.36 -0.88 -7.34 16 20 C 0.10 1.48 1.11 -10.79 -0.01 1.47 16 21 C -0.20 -2.79 8.14 71.98 0.59 -2.20 16 22 C -0.13 -1.41 8.82 71.98 0.63 -0.77 16 23 C -0.21 -3.05 8.06 71.98 0.58 -2.47 16 24 C -0.23 -5.78 5.81 22.32 0.13 -5.65 16 25 C -0.04 -1.44 9.58 22.50 0.22 -1.23 16 26 H 0.08 1.94 5.10 -2.39 -0.01 1.93 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 2.85 7.92 -2.38 -0.02 2.83 16 30 H 0.10 2.86 5.44 -2.39 -0.01 2.85 16 31 H 0.03 1.57 8.03 -2.38 -0.02 1.55 16 32 H 0.00 -0.14 7.32 -2.39 -0.02 -0.16 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.22 5.19 1.51 -69.11 -0.10 5.09 16 35 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 36 H 0.07 0.93 8.11 -2.39 -0.02 0.91 16 37 H 0.09 0.89 8.05 -2.39 -0.02 0.87 16 38 H 0.07 1.22 4.58 -2.38 -0.01 1.21 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.07 1.35 4.37 -2.39 -0.01 1.34 16 43 H 0.09 0.97 8.06 -2.39 -0.02 0.95 16 44 H 0.07 0.99 8.13 -2.39 -0.02 0.97 16 45 H 0.18 3.55 3.40 -2.91 -0.01 3.54 16 46 H 0.12 4.16 7.74 -2.91 -0.02 4.14 16 Total: -1.00 -78.41 355.93 5.38 -73.03 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.89 Total: 18.68 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 5.40 Total: -11.56 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -1.99 Total: -86.01 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.95 Total: -41.73 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.41 5.38 -73.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267440483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.044 kcal (2) G-P(sol) polarization free energy of solvation -78.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds