Wall clock time and date at job start Tue Mar 31 2020 10:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99795 * 2 1 4 4 C 1.52997 * 109.46979 * 66.04515 * 3 2 1 5 5 O 1.42908 * 109.47007 * 65.00021 * 4 3 2 6 6 C 1.42898 * 113.99744 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47138 * 179.97438 * 6 5 4 8 8 C 1.52998 * 117.49777 * 243.62646 * 7 6 5 9 9 C 1.52993 * 117.49878 * 175.00556 * 7 6 5 10 10 C 1.46904 * 111.00139 * 236.04441 * 2 1 3 11 11 C 1.50699 * 109.47184 * 293.95578 * 10 2 1 12 12 C 1.38299 * 119.92995 * 269.72439 * 11 10 2 13 13 C 1.38105 * 120.06725 * 179.72462 * 12 11 10 14 14 C 1.38875 * 119.92818 * 0.57327 * 13 12 11 15 15 O 1.35753 * 120.06662 * 179.68159 * 14 13 12 16 16 C 1.34832 * 116.99957 * 174.48605 * 15 14 13 17 17 H 1.07998 * 120.00006 * 5.05709 * 16 15 14 18 18 C 1.38656 * 120.00124 * 185.05612 * 16 15 14 19 19 N 1.31552 * 120.00150 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99680 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47262 * 90.00084 * 20 18 16 22 22 H 1.48507 * 109.46905 * 210.00158 * 20 18 16 23 23 H 1.48500 * 109.47190 * 329.99845 * 20 18 16 24 24 C 1.38881 * 119.86415 * 359.70223 * 14 13 12 25 25 C 1.38094 * 119.93205 * 0.02562 * 24 14 13 26 26 H 1.09006 * 109.47199 * 60.00186 * 1 2 3 27 27 H 1.08998 * 109.47192 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47292 * 299.99985 * 1 2 3 29 29 H 1.08994 * 109.46929 * 306.04465 * 3 2 1 30 30 H 1.09000 * 109.46527 * 186.04177 * 3 2 1 31 31 H 1.08995 * 109.47434 * 304.99833 * 4 3 2 32 32 H 1.09005 * 109.47186 * 184.99366 * 4 3 2 33 33 H 1.09008 * 109.47083 * 60.00304 * 6 5 4 34 34 H 1.08996 * 109.47430 * 300.00308 * 6 5 4 35 35 H 1.09000 * 115.54773 * 29.33134 * 7 6 5 36 36 H 1.09000 * 117.50333 * 359.97438 * 8 7 6 37 37 H 1.09001 * 117.49878 * 145.01928 * 8 7 6 38 38 H 1.09011 * 117.49591 * 214.98220 * 9 7 6 39 39 H 1.09003 * 117.50066 * 359.97438 * 9 7 6 40 40 H 1.09000 * 109.46768 * 53.95302 * 10 2 1 41 41 H 1.08993 * 109.47055 * 173.94924 * 10 2 1 42 42 H 1.08002 * 119.96564 * 359.97438 * 12 11 10 43 43 H 1.07995 * 120.03356 * 180.27152 * 13 12 11 44 44 H 0.96996 * 119.99921 * 180.02562 * 19 18 16 45 45 H 1.08006 * 120.03146 * 179.97438 * 24 14 13 46 46 H 1.08000 * 119.96611 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3182 5 8 2.2955 1.3975 2.3979 6 6 2.0221 1.9634 3.6812 7 6 2.7808 1.1816 4.7555 8 6 1.9525 0.4352 5.8033 9 6 2.7120 1.7053 6.1914 10 6 1.9955 -0.7660 -1.1376 11 6 1.6370 -2.2204 -0.9728 12 6 2.4980 -3.0720 -0.3050 13 6 2.1696 -4.4042 -0.1474 14 6 0.9789 -4.8909 -0.6708 15 8 0.6564 -6.2013 -0.5232 16 6 -0.5628 -6.5838 -0.9534 17 1 -1.2006 -5.8784 -1.4654 18 6 -0.9979 -7.8826 -0.7386 19 7 -2.1877 -8.2557 -1.1579 20 14 0.1050 -9.1024 0.1476 21 1 -0.1576 -9.0371 1.6077 22 1 -0.1778 -10.4744 -0.3454 23 1 1.5272 -8.7654 -0.1151 24 6 0.1191 -4.0344 -1.3460 25 6 0.4504 -2.7021 -1.4953 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.5611 1.9273 -0.8309 30 1 3.0797 1.3444 -0.1082 31 1 0.5531 2.0058 1.4691 32 1 1.9438 3.1011 1.2831 33 1 0.9519 1.9101 3.8813 34 1 2.3428 3.0051 3.6948 35 1 3.7147 0.7225 4.4314 36 1 0.8672 0.5015 5.7276 37 1 2.3415 -0.5153 6.1686 38 1 3.6008 1.5906 6.8121 39 1 2.1267 2.6072 6.3707 40 1 1.5611 -0.3873 -2.0628 41 1 3.0797 -0.6611 -1.1756 42 1 3.4263 -2.6940 0.0973 43 1 2.8404 -5.0677 0.3780 44 1 -2.4921 -9.1642 -1.0072 45 1 -0.8075 -4.4101 -1.7545 46 1 -0.2180 -2.0355 -2.0199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268056041.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:48 Heat of formation + Delta-G solvation = -32.169837 kcal Electronic energy + Delta-G solvation = -24294.265114 eV Core-core repulsion = 20764.176546 eV Total energy + Delta-G solvation = -3530.088568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.95113 -39.66137 -38.95684 -37.82448 -36.81872 -34.46583 -32.26768 -31.79941 -30.13489 -28.15960 -27.66013 -26.99966 -24.70763 -23.64286 -23.24470 -22.23258 -21.62212 -21.39252 -19.79052 -19.06918 -17.83546 -17.34891 -16.79254 -16.62031 -16.42238 -16.06299 -15.75723 -15.63536 -15.59337 -15.29958 -15.09227 -14.57126 -14.31270 -14.17591 -14.01179 -13.90372 -13.60746 -13.05166 -12.93492 -12.71246 -12.64063 -12.50088 -12.39241 -12.36771 -12.09982 -12.04844 -11.90537 -11.65232 -11.30822 -11.25905 -11.08663 -10.89638 -10.32307 -9.76704 -9.19620 -8.91787 -8.50048 -6.22264 0.59088 0.64710 1.30940 1.35314 1.51896 2.28282 2.62518 2.71175 2.97165 3.02031 3.15102 3.34996 3.87099 3.97311 3.99152 4.03330 4.09022 4.19767 4.25781 4.28930 4.38300 4.40840 4.49788 4.50033 4.60190 4.60964 4.65402 4.72240 4.74841 4.77753 4.80691 4.86020 4.97519 5.01517 5.02355 5.14365 5.23538 5.27687 5.28171 5.38555 5.59632 5.77611 5.82152 5.91840 6.15589 6.19186 6.28610 6.46834 6.84632 7.59971 8.61757 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014301 B = 0.002897 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.466826 B = 9661.435154 C =10870.052911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.544 5.544 3 C 0.056 3.944 4 C 0.064 3.936 5 O -0.393 6.393 6 C 0.092 3.908 7 C -0.166 4.166 8 C -0.189 4.189 9 C -0.158 4.158 10 C 0.114 3.886 11 C -0.143 4.143 12 C -0.050 4.050 13 C -0.194 4.194 14 C 0.120 3.880 15 O -0.247 6.247 16 C -0.399 4.399 17 H 0.080 0.920 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.266 1.266 23 H -0.263 1.263 24 C -0.237 4.237 25 C -0.064 4.064 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.064 0.936 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.147 0.853 43 H 0.126 0.874 44 H 0.285 0.715 45 H 0.107 0.893 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.292 24.943 7.856 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.012 4.012 5 O -0.312 6.312 6 C 0.016 3.984 7 C -0.184 4.184 8 C -0.226 4.226 9 C -0.195 4.195 10 C -0.013 4.013 11 C -0.144 4.144 12 C -0.068 4.068 13 C -0.213 4.213 14 C 0.071 3.929 15 O -0.154 6.154 16 C -0.475 4.475 17 H 0.098 0.902 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.191 1.191 23 H -0.188 1.188 24 C -0.256 4.256 25 C -0.083 4.083 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.164 0.836 43 H 0.144 0.856 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.545 24.233 8.324 27.708 hybrid contribution -0.934 -0.493 -0.623 1.227 sum 9.611 23.740 7.701 26.744 Atomic orbital electron populations 1.22430 0.87745 1.01750 1.00662 1.61896 1.07869 1.13747 1.43306 1.22214 1.01473 0.87981 0.95432 1.22650 0.96371 0.95660 0.86543 1.87983 1.70656 1.57794 1.14788 1.22031 0.97760 0.96110 0.82511 1.22142 1.01572 1.04426 0.90246 1.23107 0.98907 0.96969 1.03583 1.23055 1.03115 0.97917 0.95409 1.20850 1.00719 0.88274 0.91438 1.19639 0.95491 0.96192 1.03101 1.20878 0.99500 0.90804 0.95624 1.20507 0.96510 0.97299 1.06980 1.19653 0.94970 0.83414 0.94872 1.83517 1.34297 1.22193 1.75417 1.20708 0.90822 0.98491 1.37464 0.90209 1.25273 0.97348 0.98594 0.97637 1.69726 1.19009 1.20599 1.47208 0.85222 0.79281 0.77393 0.78848 1.19132 1.19089 1.18752 1.21234 1.01793 0.95520 1.07090 1.20885 0.96337 0.93261 0.97803 0.94592 0.92851 0.91335 0.91634 0.89548 0.93363 0.91074 0.93535 0.91811 0.88073 0.88805 0.88880 0.87498 0.87485 0.93426 0.88888 0.83557 0.85628 0.90585 0.87537 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.98 127.69 1.15 1.66 16 2 N -0.54 -12.49 4.70 -927.07 -4.36 -16.85 16 3 C 0.06 0.95 5.34 86.30 0.46 1.41 16 4 C 0.06 1.06 5.99 71.98 0.43 1.49 16 5 O -0.39 -8.63 10.29 -148.98 -1.53 -10.16 16 6 C 0.09 1.60 6.22 71.98 0.45 2.05 16 7 C -0.17 -2.94 6.06 -10.80 -0.07 -3.01 16 8 C -0.19 -3.22 10.18 30.59 0.31 -2.91 16 9 C -0.16 -2.07 10.25 30.59 0.31 -1.75 16 10 C 0.11 2.63 5.12 85.56 0.44 3.07 16 11 C -0.14 -4.46 4.89 -19.83 -0.10 -4.55 16 12 C -0.05 -1.63 9.69 22.25 0.22 -1.42 16 13 C -0.19 -7.80 9.99 22.39 0.22 -7.57 16 14 C 0.12 5.81 6.65 22.58 0.15 5.96 16 15 O -0.25 -13.81 8.59 -22.79 -0.20 -14.01 16 16 C -0.40 -24.05 9.95 67.92 0.68 -23.38 16 17 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 18 C 0.01 0.57 5.49 84.83 0.47 1.03 16 19 N -0.92 -56.15 13.96 21.61 0.30 -55.85 16 20 Si 0.97 46.45 28.62 68.60 1.96 48.42 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 24 C -0.24 -10.72 9.17 22.39 0.21 -10.51 16 25 C -0.06 -2.28 7.89 22.25 0.18 -2.10 16 26 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.05 1.51 5.88 -2.39 -0.01 1.50 16 28 H 0.07 1.47 6.37 -2.39 -0.02 1.46 16 29 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 30 H 0.09 1.40 7.93 -2.39 -0.02 1.38 16 31 H 0.05 0.79 6.34 -2.39 -0.02 0.78 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.05 0.79 7.87 -2.38 -0.02 0.77 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.09 1.59 8.03 -2.39 -0.02 1.57 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.05 0.99 8.06 -2.39 -0.02 0.97 16 41 H 0.09 1.86 7.87 -2.39 -0.02 1.85 16 42 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 43 H 0.13 4.72 8.06 -2.91 -0.02 4.69 16 44 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.11 5.28 5.64 -2.91 -0.02 5.27 16 46 H 0.13 3.89 7.98 -2.91 -0.02 3.87 16 Total: -1.00 -69.18 376.30 2.63 -66.55 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.95 Total: 22.44 kcal Atomic # 6 Polarization: -46.04 SS G_CDS: 5.50 Total: -40.54 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -4.06 Total: -72.70 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.73 Total: -24.17 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.96 Total: 48.42 kcal Total: -69.18 2.63 -66.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268056041.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.384 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds