Wall clock time and date at job start Tue Mar 31 2020 10:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46904 * 110.99892 * 2 1 4 4 C 1.50700 * 109.46763 * 66.04655 * 3 2 1 5 5 C 1.38309 * 119.93136 * 89.99913 * 4 3 2 6 6 C 1.38098 * 120.07021 * 179.97438 * 5 4 3 7 7 C 1.38875 * 119.93063 * 0.02562 * 6 5 4 8 8 O 1.35755 * 120.06689 * 180.02562 * 7 6 5 9 9 C 1.34822 * 117.00038 * 5.53796 * 8 7 6 10 10 H 1.08004 * 120.00470 * 354.93584 * 9 8 7 11 11 C 1.38660 * 120.00300 * 174.94514 * 9 8 7 12 12 N 1.31556 * 119.99320 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00472 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47254 * 269.99952 * 13 11 9 15 15 H 1.48507 * 109.46842 * 29.99849 * 13 11 9 16 16 H 1.48498 * 109.47202 * 149.99544 * 13 11 9 17 17 C 1.38883 * 119.86225 * 0.27186 * 7 6 5 18 18 C 1.38101 * 119.92844 * 359.45102 * 17 7 6 19 19 C 1.46901 * 111.00165 * 236.05246 * 2 1 3 20 20 C 1.53001 * 109.46682 * 293.95153 * 19 2 1 21 21 H 1.09001 * 110.02019 * 53.61298 * 20 19 2 22 22 C 1.54262 * 110.03649 * 292.16638 * 20 19 2 23 23 C 1.54885 * 104.19846 * 217.10710 * 22 20 19 24 24 C 1.54897 * 102.74930 * 37.94090 * 23 22 20 25 25 C 1.53883 * 110.03189 * 174.99726 * 20 19 2 26 26 H 1.09004 * 110.02606 * 0.02562 * 25 20 19 27 27 O 1.42896 * 110.03348 * 238.56860 * 25 20 19 28 28 H 1.08998 * 109.46684 * 59.99726 * 1 2 3 29 29 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46932 * 299.99624 * 1 2 3 31 31 H 1.09000 * 109.47330 * 306.05071 * 3 2 1 32 32 H 1.08997 * 109.46987 * 186.04004 * 3 2 1 33 33 H 1.08001 * 119.96001 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.03090 * 179.97438 * 6 5 4 35 35 H 0.97008 * 119.99684 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.02924 * 179.72630 * 17 7 6 37 37 H 1.08000 * 119.96205 * 180.27275 * 18 17 7 38 38 H 1.09001 * 109.47220 * 53.95015 * 19 2 1 39 39 H 1.08995 * 109.47451 * 173.95251 * 19 2 1 40 40 H 1.09010 * 110.48212 * 335.78579 * 22 20 19 41 41 H 1.09000 * 110.48695 * 98.42332 * 22 20 19 42 42 H 1.08992 * 110.75899 * 279.62615 * 23 22 20 43 43 H 1.09000 * 110.75730 * 156.25224 * 23 22 20 44 44 H 1.08997 * 110.48473 * 203.38137 * 24 23 22 45 45 H 1.09001 * 110.48416 * 80.73877 * 24 23 22 46 46 H 0.96701 * 113.99730 * 179.97438 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 6 2.4954 1.9639 2.3797 6 6 2.1699 2.5824 3.5708 7 6 0.9789 3.2879 3.6824 8 8 0.6565 3.8974 4.8518 9 6 1.5852 3.8774 5.8289 10 1 2.5014 3.3220 5.6920 11 6 1.3643 4.5698 7.0098 12 7 0.2485 5.2465 7.1765 13 14 2.6508 4.5415 8.3639 14 1 2.3857 3.3991 9.2748 15 1 4.0000 4.3918 7.7617 16 1 2.5894 5.8113 9.1315 17 6 0.1161 3.3644 2.5968 18 6 0.4500 2.7486 1.4066 19 6 1.9955 -0.7658 -1.1377 20 6 1.6316 -2.2425 -0.9705 21 1 0.5573 -2.3471 -0.8181 22 6 2.3971 -2.8433 0.2265 23 6 2.7467 -4.2816 -0.2294 24 6 3.0823 -4.0926 -1.7298 25 6 2.0672 -3.0369 -2.2143 26 1 2.5383 -2.3704 -2.9368 27 8 0.9363 -3.6803 -2.8051 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 -0.8309 32 1 3.0798 1.3444 -0.1081 33 1 3.4212 1.4147 2.2924 34 1 2.8405 2.5167 4.4149 35 1 0.0941 5.7312 8.0025 36 1 -0.8128 3.9087 2.6820 37 1 -0.2185 2.8114 0.5607 38 1 1.5612 -0.3871 -2.0629 39 1 3.0798 -0.6610 -1.1757 40 1 3.3057 -2.2738 0.4228 41 1 1.7621 -2.8675 1.1121 42 1 1.8908 -4.9449 -0.1057 43 1 3.6118 -4.6599 0.3151 44 1 2.9473 -5.0286 -2.2717 45 1 4.1015 -3.7250 -1.8493 46 1 1.1461 -4.1974 -3.5948 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270225004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:50 Heat of formation + Delta-G solvation = -58.536963 kcal Electronic energy + Delta-G solvation = -24633.728184 eV Core-core repulsion = 21102.496251 eV Total energy + Delta-G solvation = -3531.231933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.60623 -39.00944 -37.49306 -36.01669 -34.90420 -32.31920 -30.93618 -30.18760 -29.06603 -27.93309 -26.94267 -25.50896 -24.50317 -22.06232 -21.76678 -21.09716 -20.17816 -19.72466 -17.95103 -17.36836 -16.91792 -16.06796 -15.79712 -15.25347 -15.04188 -14.74609 -14.49947 -14.32491 -13.87315 -13.52951 -13.40778 -13.24823 -13.14212 -12.68823 -12.67444 -12.49792 -12.23755 -11.72875 -11.67101 -11.49631 -11.37926 -11.22409 -11.16397 -10.92242 -10.80475 -10.70801 -10.61470 -10.55129 -10.44942 -10.40022 -10.14624 -9.29645 -8.81106 -8.21884 -8.10680 -7.13677 -6.42930 -4.01479 2.25351 2.32562 3.14131 3.15027 3.19897 3.76843 3.98663 4.15911 4.37297 4.44012 4.67044 4.74810 4.92357 5.09189 5.12597 5.22085 5.24996 5.30507 5.34446 5.41027 5.44535 5.45162 5.56490 5.61563 5.68065 5.69636 5.76650 5.80121 5.86802 5.90805 5.91338 5.96040 6.17746 6.18723 6.24991 6.31888 6.46298 6.73630 6.93970 7.07513 7.11950 7.19657 7.31595 7.38942 7.45585 7.48315 7.86773 8.02503 9.02953 9.73744 10.75239 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.002564 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.668370 B =10918.070642 C =11585.799283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.532 5.532 3 C 0.114 3.886 4 C -0.178 4.178 5 C -0.049 4.049 6 C -0.235 4.235 7 C 0.155 3.845 8 O -0.179 6.179 9 C -0.391 4.391 10 H 0.092 0.908 11 C 0.038 3.962 12 N -0.864 5.864 13 Si 0.941 3.059 14 H -0.273 1.273 15 H -0.268 1.268 16 H -0.278 1.278 17 C -0.194 4.194 18 C -0.068 4.068 19 C 0.063 3.937 20 C -0.083 4.083 21 H 0.087 0.913 22 C -0.104 4.104 23 C -0.125 4.125 24 C -0.155 4.155 25 C 0.102 3.898 26 H 0.055 0.945 27 O -0.565 6.565 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.269 0.731 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.496 -15.450 -18.115 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.256 5.256 3 C -0.013 4.013 4 C -0.179 4.179 5 C -0.068 4.068 6 C -0.254 4.254 7 C 0.102 3.898 8 O -0.082 6.082 9 C -0.467 4.467 10 H 0.109 0.891 11 C -0.166 4.166 12 N -0.499 5.499 13 Si 0.765 3.235 14 H -0.199 1.199 15 H -0.192 1.192 16 H -0.203 1.203 17 C -0.213 4.213 18 C -0.087 4.087 19 C -0.066 4.066 20 C -0.102 4.102 21 H 0.105 0.895 22 C -0.141 4.141 23 C -0.163 4.163 24 C -0.193 4.193 25 C 0.043 3.957 26 H 0.073 0.927 27 O -0.371 6.371 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.143 0.857 35 H 0.079 0.921 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.040 -15.099 -16.922 23.232 hybrid contribution 0.696 0.089 -0.522 0.875 sum 5.736 -15.010 -17.444 23.717 Atomic orbital electron populations 1.22475 0.87507 1.01619 1.01104 1.61999 1.08073 1.13864 1.41640 1.20802 0.99127 0.86842 0.94529 1.19049 0.97509 1.05648 0.95691 1.20544 0.97831 0.96410 0.92029 1.21151 0.99666 1.05522 0.99107 1.19393 0.92374 0.91091 0.86980 1.83974 1.40858 1.65352 1.18053 1.21325 0.99312 1.32417 0.93644 0.89077 1.25287 0.97747 0.95574 0.97956 1.70044 1.23891 1.29533 1.26410 0.85717 0.79699 0.78117 0.79927 1.19888 1.19201 1.20288 1.20164 1.01354 1.07650 0.92160 1.20478 0.95537 0.96580 0.96067 1.22194 0.99869 0.92667 0.91827 1.21776 1.01970 0.93306 0.93170 0.89521 1.22267 1.00287 0.94296 0.97286 1.22507 1.01090 0.97827 0.94874 1.23072 0.99401 0.99108 0.97731 1.22500 0.85877 0.92816 0.94523 0.92673 1.86563 1.34745 1.69198 1.46563 0.96200 0.91738 0.90289 0.95082 0.91030 0.87590 0.85663 0.92065 0.86691 0.87574 0.95222 0.90897 0.91089 0.91036 0.91504 0.91660 0.91408 0.90977 0.77921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.95 60.07 0.54 0.81 16 2 N -0.53 -6.86 4.57 -244.36 -1.12 -7.98 16 3 C 0.11 1.55 5.12 -4.97 -0.03 1.53 16 4 C -0.18 -3.03 4.89 -104.57 -0.51 -3.54 16 5 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 6 C -0.24 -5.16 9.17 -39.40 -0.36 -5.52 16 7 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 8 O -0.18 -5.16 9.76 0.06 0.00 -5.16 16 9 C -0.39 -11.01 9.49 30.89 0.29 -10.71 16 10 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 11 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 12 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 13 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 14 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 C -0.19 -4.13 9.99 -39.39 -0.39 -4.52 16 18 C -0.07 -1.21 7.95 -39.61 -0.32 -1.53 16 19 C 0.06 0.66 4.01 -3.82 -0.02 0.65 16 20 C -0.08 -0.85 2.69 -89.50 -0.24 -1.09 16 21 H 0.09 1.03 6.06 -51.93 -0.31 0.72 16 22 C -0.10 -1.05 6.19 -25.08 -0.16 -1.20 16 23 C -0.13 -1.07 6.91 -24.74 -0.17 -1.24 16 24 C -0.16 -1.14 6.56 -25.07 -0.16 -1.30 16 25 C 0.10 0.86 3.92 -25.61 -0.10 0.76 16 26 H 0.06 0.42 7.67 -51.93 -0.40 0.02 16 27 O -0.57 -5.08 13.21 -35.23 -0.47 -5.55 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.78 6.19 -51.93 -0.32 0.46 16 30 H 0.08 1.16 6.16 -51.93 -0.32 0.84 16 31 H 0.03 0.41 8.06 -51.93 -0.42 -0.01 16 32 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 33 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 37 H 0.11 1.62 8.03 -52.49 -0.42 1.20 16 38 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 39 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 40 H 0.07 0.73 7.76 -51.92 -0.40 0.33 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.37 1.72 9.11 45.56 0.41 2.14 16 LS Contribution 366.63 15.07 5.52 5.52 Total: -1.00 -31.37 366.63 -9.19 -40.56 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.50 Total: 5.42 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.36 Total: -23.70 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: -0.36 Total: -32.74 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.46 Total: -10.70 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.37 -9.19 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270225004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.979 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds