Wall clock time and date at job start Tue Mar 31 2020 10:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46904 * 110.99892 * 2 1 4 4 C 1.50700 * 109.46763 * 66.04655 * 3 2 1 5 5 C 1.38309 * 119.93136 * 89.99913 * 4 3 2 6 6 C 1.38098 * 120.07021 * 179.97438 * 5 4 3 7 7 C 1.38875 * 119.93063 * 0.02562 * 6 5 4 8 8 O 1.35755 * 120.06689 * 180.02562 * 7 6 5 9 9 C 1.34822 * 117.00038 * 5.53796 * 8 7 6 10 10 H 1.08004 * 120.00470 * 354.93584 * 9 8 7 11 11 C 1.38660 * 120.00300 * 174.94514 * 9 8 7 12 12 N 1.31556 * 119.99320 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00472 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47254 * 269.99952 * 13 11 9 15 15 H 1.48507 * 109.46842 * 29.99849 * 13 11 9 16 16 H 1.48498 * 109.47202 * 149.99544 * 13 11 9 17 17 C 1.38883 * 119.86225 * 0.27186 * 7 6 5 18 18 C 1.38101 * 119.92844 * 359.45102 * 17 7 6 19 19 C 1.46901 * 111.00165 * 236.05246 * 2 1 3 20 20 C 1.53001 * 109.46682 * 293.95153 * 19 2 1 21 21 H 1.09001 * 110.02019 * 53.61298 * 20 19 2 22 22 C 1.54262 * 110.03649 * 292.16638 * 20 19 2 23 23 C 1.54885 * 104.19846 * 217.10710 * 22 20 19 24 24 C 1.54897 * 102.74930 * 37.94090 * 23 22 20 25 25 C 1.53883 * 110.03189 * 174.99726 * 20 19 2 26 26 H 1.09004 * 110.02606 * 0.02562 * 25 20 19 27 27 O 1.42896 * 110.03348 * 238.56860 * 25 20 19 28 28 H 1.08998 * 109.46684 * 59.99726 * 1 2 3 29 29 H 1.09000 * 109.46689 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46932 * 299.99624 * 1 2 3 31 31 H 1.09000 * 109.47330 * 306.05071 * 3 2 1 32 32 H 1.08997 * 109.46987 * 186.04004 * 3 2 1 33 33 H 1.08001 * 119.96001 * 359.97438 * 5 4 3 34 34 H 1.08000 * 120.03090 * 179.97438 * 6 5 4 35 35 H 0.97008 * 119.99684 * 180.02562 * 12 11 9 36 36 H 1.07997 * 120.02924 * 179.72630 * 17 7 6 37 37 H 1.08000 * 119.96205 * 180.27275 * 18 17 7 38 38 H 1.09001 * 109.47220 * 53.95015 * 19 2 1 39 39 H 1.08995 * 109.47451 * 173.95251 * 19 2 1 40 40 H 1.09010 * 110.48212 * 335.78579 * 22 20 19 41 41 H 1.09000 * 110.48695 * 98.42332 * 22 20 19 42 42 H 1.08992 * 110.75899 * 279.62615 * 23 22 20 43 43 H 1.09000 * 110.75730 * 156.25224 * 23 22 20 44 44 H 1.08997 * 110.48473 * 203.38137 * 24 23 22 45 45 H 1.09001 * 110.48416 * 80.73877 * 24 23 22 46 46 H 0.96701 * 113.99730 * 179.97438 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 6 2.4954 1.9639 2.3797 6 6 2.1699 2.5824 3.5708 7 6 0.9789 3.2879 3.6824 8 8 0.6565 3.8974 4.8518 9 6 1.5852 3.8774 5.8289 10 1 2.5014 3.3220 5.6920 11 6 1.3643 4.5698 7.0098 12 7 0.2485 5.2465 7.1765 13 14 2.6508 4.5415 8.3639 14 1 2.3857 3.3991 9.2748 15 1 4.0000 4.3918 7.7617 16 1 2.5894 5.8113 9.1315 17 6 0.1161 3.3644 2.5968 18 6 0.4500 2.7486 1.4066 19 6 1.9955 -0.7658 -1.1377 20 6 1.6316 -2.2425 -0.9705 21 1 0.5573 -2.3471 -0.8181 22 6 2.3971 -2.8433 0.2265 23 6 2.7467 -4.2816 -0.2294 24 6 3.0823 -4.0926 -1.7298 25 6 2.0672 -3.0369 -2.2143 26 1 2.5383 -2.3704 -2.9368 27 8 0.9363 -3.6803 -2.8051 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.5611 1.9274 -0.8309 32 1 3.0798 1.3444 -0.1081 33 1 3.4212 1.4147 2.2924 34 1 2.8405 2.5167 4.4149 35 1 0.0941 5.7312 8.0025 36 1 -0.8128 3.9087 2.6820 37 1 -0.2185 2.8114 0.5607 38 1 1.5612 -0.3871 -2.0629 39 1 3.0798 -0.6610 -1.1757 40 1 3.3057 -2.2738 0.4228 41 1 1.7621 -2.8675 1.1121 42 1 1.8908 -4.9449 -0.1057 43 1 3.6118 -4.6599 0.3151 44 1 2.9473 -5.0286 -2.2717 45 1 4.1015 -3.7250 -1.8493 46 1 1.1461 -4.1974 -3.5948 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270225004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:49 Heat of formation + Delta-G solvation = -79.976815 kcal Electronic energy + Delta-G solvation = -24634.657885 eV Core-core repulsion = 21102.496251 eV Total energy + Delta-G solvation = -3532.161635 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.87290 -40.20301 -38.84976 -37.32289 -35.67447 -34.29839 -32.13425 -31.79218 -30.21217 -28.60819 -28.18246 -27.25849 -25.73055 -23.58773 -23.03469 -21.83908 -21.53848 -20.49019 -19.82209 -18.80365 -18.05234 -16.86558 -16.67797 -16.55100 -16.28277 -16.03885 -15.79097 -15.77578 -15.44695 -15.17229 -14.61126 -14.43834 -14.29664 -14.03181 -13.81833 -13.56710 -13.35748 -13.02544 -12.98456 -12.67875 -12.59383 -12.56353 -12.25524 -12.16486 -12.11797 -11.89546 -11.85735 -11.61184 -11.38592 -11.35127 -11.14932 -10.78865 -10.75157 -9.74001 -9.22559 -8.85604 -8.46394 -6.14295 0.62413 0.70349 1.35213 1.44563 1.52914 2.18539 2.73029 3.00768 3.26162 3.49230 3.53575 3.70160 3.76899 4.01294 4.04421 4.08528 4.21380 4.26957 4.38936 4.44174 4.50692 4.54335 4.60856 4.62341 4.65984 4.72334 4.81093 4.82556 4.86106 4.90004 5.01603 5.08129 5.10858 5.12225 5.17226 5.23680 5.27284 5.32676 5.41353 5.54337 5.58955 5.73891 5.83633 6.04242 6.15110 6.19435 6.29118 6.96733 6.98502 7.80136 8.77058 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024649 B = 0.002564 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.668370 B =10918.070642 C =11585.799283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.543 5.543 3 C 0.116 3.884 4 C -0.151 4.151 5 C -0.049 4.049 6 C -0.243 4.243 7 C 0.113 3.887 8 O -0.234 6.234 9 C -0.412 4.412 10 H 0.101 0.899 11 C -0.024 4.024 12 N -0.922 5.922 13 Si 1.019 2.981 14 H -0.263 1.263 15 H -0.252 1.252 16 H -0.271 1.271 17 C -0.206 4.206 18 C -0.059 4.059 19 C 0.067 3.933 20 C -0.084 4.084 21 H 0.065 0.935 22 C -0.104 4.104 23 C -0.126 4.126 24 C -0.149 4.149 25 C 0.104 3.896 26 H 0.070 0.930 27 O -0.586 6.586 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.272 0.728 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.036 0.964 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.842 -17.326 -20.909 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.267 5.267 3 C -0.011 4.011 4 C -0.152 4.152 5 C -0.067 4.067 6 C -0.263 4.263 7 C 0.063 3.937 8 O -0.141 6.141 9 C -0.489 4.489 10 H 0.118 0.882 11 C -0.222 4.222 12 N -0.561 5.561 13 Si 0.838 3.162 14 H -0.188 1.188 15 H -0.176 1.176 16 H -0.196 1.196 17 C -0.225 4.225 18 C -0.077 4.077 19 C -0.060 4.060 20 C -0.102 4.102 21 H 0.084 0.916 22 C -0.141 4.141 23 C -0.163 4.163 24 C -0.187 4.187 25 C 0.045 3.955 26 H 0.087 0.913 27 O -0.394 6.394 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.157 0.843 38 H 0.054 0.946 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 7.399 -17.020 -19.790 27.131 hybrid contribution -0.070 0.484 -0.016 0.489 sum 7.329 -16.536 -19.806 26.822 Atomic orbital electron populations 1.22414 0.87776 1.01776 1.00524 1.61914 1.07966 1.13428 1.43385 1.20827 1.00637 0.87204 0.92439 1.19570 0.95906 1.02987 0.96775 1.20888 0.99240 0.95656 0.90918 1.21247 0.98799 1.05811 1.00409 1.19933 0.94389 0.92479 0.86893 1.83937 1.42232 1.68154 1.19759 1.21817 0.99835 1.32938 0.94265 0.88160 1.26601 1.00216 0.94864 1.00472 1.70192 1.26598 1.31694 1.27573 0.84585 0.76943 0.78496 0.76174 1.18843 1.17596 1.19563 1.20407 1.01017 1.08273 0.92822 1.20834 0.96294 0.95091 0.95513 1.22219 1.00635 0.92243 0.90928 1.21745 1.00637 0.93609 0.94248 0.91649 1.22230 0.99810 0.95483 0.96617 1.22500 1.01053 0.96613 0.96172 1.23055 0.99677 0.99459 0.96486 1.22471 0.85869 0.93187 0.94005 0.91257 1.86516 1.35423 1.69703 1.47795 0.95048 0.91449 0.92403 0.93477 0.88944 0.84447 0.86532 0.91880 0.87190 0.84273 0.94593 0.89363 0.91026 0.93116 0.92439 0.90888 0.90208 0.89705 0.75777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 8.95 127.69 1.14 1.69 16 2 N -0.54 -12.18 4.57 -927.03 -4.24 -16.42 16 3 C 0.12 2.65 5.12 85.56 0.44 3.09 16 4 C -0.15 -4.73 4.89 -19.83 -0.10 -4.82 16 5 C -0.05 -1.70 9.69 22.25 0.22 -1.48 16 6 C -0.24 -10.82 9.17 22.39 0.21 -10.61 16 7 C 0.11 5.77 6.65 22.58 0.15 5.92 16 8 O -0.23 -14.40 9.76 -22.72 -0.22 -14.62 16 9 C -0.41 -24.46 9.49 67.92 0.64 -23.82 16 10 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16 11 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 12 N -0.92 -57.49 13.67 21.61 0.30 -57.19 16 13 Si 1.02 43.47 29.55 68.60 2.03 45.50 16 14 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 15 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 17 C -0.21 -8.97 9.99 22.39 0.22 -8.74 16 18 C -0.06 -2.00 7.95 22.25 0.18 -1.82 16 19 C 0.07 1.17 4.01 86.30 0.35 1.52 16 20 C -0.08 -1.50 2.69 -10.07 -0.03 -1.52 16 21 H 0.07 1.46 6.06 -2.39 -0.01 1.45 16 22 C -0.10 -1.90 6.19 31.67 0.20 -1.71 16 23 C -0.13 -1.89 6.91 31.89 0.22 -1.67 16 24 C -0.15 -1.69 6.56 31.67 0.21 -1.49 16 25 C 0.10 1.43 3.92 31.32 0.12 1.55 16 26 H 0.07 0.77 7.67 -2.39 -0.02 0.76 16 27 O -0.59 -9.03 13.21 -148.98 -1.97 -11.00 16 28 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 1.54 6.19 -2.39 -0.01 1.52 16 30 H 0.06 1.59 6.16 -2.39 -0.01 1.58 16 31 H 0.05 0.98 8.06 -2.39 -0.02 0.97 16 32 H 0.09 1.83 7.87 -2.39 -0.02 1.81 16 33 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 34 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 35 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 36 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.14 3.82 8.03 -2.91 -0.02 3.80 16 38 H 0.04 0.61 8.12 -2.39 -0.02 0.59 16 39 H 0.09 1.30 7.79 -2.39 -0.02 1.29 16 40 H 0.07 1.29 7.76 -2.38 -0.02 1.27 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 0.74 8.06 -2.39 -0.02 0.72 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.39 2.50 9.11 -74.06 -0.67 1.83 16 Total: -1.00 -72.94 366.63 0.82 -72.12 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.30 Total: 26.46 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 4.63 Total: -44.85 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -3.94 Total: -73.61 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -2.19 Total: -25.62 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -72.94 0.82 -72.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270225004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.858 kcal (2) G-P(sol) polarization free energy of solvation -72.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds