Wall clock time and date at job start Tue Mar 31 2020 10:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99835 * 2 1 4 4 C 1.50698 * 109.47003 * 66.04818 * 3 2 1 5 5 C 1.38306 * 119.92895 * 269.72646 * 4 3 2 6 6 C 1.38099 * 120.06467 * 179.72689 * 5 4 3 7 7 C 1.38874 * 119.93116 * 0.54578 * 6 5 4 8 8 O 1.35761 * 120.06795 * 179.75143 * 7 6 5 9 9 C 1.34828 * 116.99776 * 174.65478 * 8 7 6 10 10 H 1.07993 * 120.00170 * 5.09411 * 9 8 7 11 11 C 1.38654 * 119.99580 * 185.08604 * 9 8 7 12 12 N 1.31558 * 119.99912 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00162 * 0.02562 * 11 9 8 14 14 H 1.48508 * 109.46883 * 89.99489 * 13 11 9 15 15 H 1.48501 * 109.47031 * 209.99201 * 13 11 9 16 16 H 1.48496 * 109.47042 * 329.99778 * 13 11 9 17 17 C 1.38872 * 119.86467 * 359.72648 * 7 6 5 18 18 C 1.38098 * 119.93386 * 0.02562 * 17 7 6 19 19 C 1.46907 * 111.00169 * 236.04867 * 2 1 3 20 20 C 1.52994 * 109.47198 * 199.94982 * 19 2 1 21 21 H 1.09003 * 110.05677 * 305.02621 * 20 19 2 22 22 C 1.54275 * 110.03337 * 66.43625 * 20 19 2 23 23 C 1.55239 * 104.22755 * 142.89759 * 22 20 19 24 24 C 1.54886 * 102.58958 * 322.08463 * 23 22 20 25 25 C 1.53869 * 110.03526 * 183.60524 * 20 19 2 26 26 H 1.09005 * 110.07093 * 0.02562 * 25 20 19 27 27 O 1.42905 * 110.03589 * 121.42785 * 25 20 19 28 28 H 1.09002 * 109.46548 * 187.94696 * 1 2 3 29 29 H 1.08999 * 109.46877 * 307.94166 * 1 2 3 30 30 H 1.08993 * 109.47481 * 67.94853 * 1 2 3 31 31 H 1.08998 * 109.46640 * 186.04518 * 3 2 1 32 32 H 1.09000 * 109.46981 * 306.04378 * 3 2 1 33 33 H 1.07994 * 119.96335 * 0.02562 * 5 4 3 34 34 H 1.08005 * 120.03070 * 180.27617 * 6 5 4 35 35 H 0.96996 * 119.99860 * 180.02562 * 12 11 9 36 36 H 1.08004 * 120.03467 * 179.97438 * 17 7 6 37 37 H 1.07991 * 119.97235 * 179.97438 * 18 17 7 38 38 H 1.09000 * 109.47152 * 79.94920 * 19 2 1 39 39 H 1.09001 * 109.46829 * 319.94826 * 19 2 1 40 40 H 1.08997 * 110.48381 * 261.57177 * 22 20 19 41 41 H 1.08996 * 110.48290 * 24.21815 * 22 20 19 42 42 H 1.09005 * 110.89260 * 203.79209 * 23 22 20 43 43 H 1.09000 * 110.76656 * 80.31800 * 23 22 20 44 44 H 1.09002 * 110.48787 * 279.19118 * 24 23 22 45 45 H 1.09000 * 110.48522 * 156.67981 * 24 23 22 46 46 H 0.96700 * 113.99934 * 178.62264 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 6 0.4527 2.7538 1.4047 6 6 0.1187 3.3693 2.5950 7 6 0.9786 3.2876 3.6824 8 8 0.6554 3.8959 4.8523 9 6 1.4784 3.6855 5.8993 10 1 2.3916 3.1250 5.7643 11 6 1.1524 4.1890 7.1494 12 7 1.9551 3.9833 8.1712 13 14 -0.4275 5.1580 7.3831 14 1 -1.5288 4.2296 7.7441 15 1 -0.2419 6.1525 8.4703 16 1 -0.7675 5.8622 6.1207 17 6 2.1696 2.5821 3.5708 18 6 2.4956 1.9644 2.3795 19 6 1.9955 -0.7660 -1.1377 20 6 3.4441 -1.1687 -0.8547 21 1 4.0384 -0.2858 -0.6195 22 6 3.4950 -2.1680 0.3196 23 6 4.6248 -3.1584 -0.0709 24 6 4.4285 -3.3086 -1.5999 25 6 4.0376 -1.8940 -2.0750 26 1 3.2942 -1.9590 -2.8696 27 8 5.1944 -1.1979 -2.5434 28 1 -0.3632 -1.0179 0.1421 29 1 -0.3633 0.6319 0.8105 30 1 -0.3634 0.3858 -0.9524 31 1 3.0796 1.3444 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 -0.2136 2.8202 0.5574 34 1 -0.8082 3.9172 2.6786 35 1 1.7268 4.3352 9.0458 36 1 2.8405 2.5172 4.4147 37 1 3.4217 1.4159 2.2919 38 1 1.9583 -0.1519 -2.0375 39 1 1.3913 -1.6614 -1.2835 40 1 3.7432 -1.6534 1.2479 41 1 2.5444 -2.6926 0.4155 42 1 4.4926 -4.1166 0.4316 43 1 5.6041 -2.7354 0.1531 44 1 3.6286 -4.0175 -1.8140 45 1 5.3566 -3.6275 -2.0742 46 1 5.6269 -1.6179 -3.2994 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270225009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:15:02 Heat of formation + Delta-G solvation = -77.368052 kcal Electronic energy + Delta-G solvation = -24848.778746 eV Core-core repulsion = 21316.730236 eV Total energy + Delta-G solvation = -3532.048510 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.99312 -40.19671 -38.93242 -37.35122 -35.66634 -34.46214 -32.08233 -31.86400 -30.68047 -28.57221 -28.12779 -26.90202 -25.79911 -23.70201 -22.97934 -21.91060 -21.53233 -20.48423 -19.81469 -19.08210 -18.02387 -16.92886 -16.76471 -16.58467 -16.25229 -16.11094 -15.74705 -15.62148 -15.42294 -15.24422 -14.71684 -14.44209 -14.27590 -14.09440 -13.95926 -13.84268 -13.35871 -13.13230 -12.97944 -12.88606 -12.67948 -12.46100 -12.35756 -12.16570 -11.97954 -11.89074 -11.84352 -11.62286 -11.41412 -11.36513 -11.25629 -10.89655 -10.75267 -9.78174 -9.22650 -8.93603 -8.49939 -6.22633 0.57422 0.63200 1.31088 1.35534 1.52028 2.28177 2.69185 2.94064 3.11373 3.21119 3.51061 3.71457 3.77011 3.96231 4.03773 4.08764 4.16410 4.21939 4.40654 4.41812 4.50130 4.54769 4.58395 4.60886 4.68427 4.70347 4.78700 4.84900 4.87443 4.90733 4.98328 5.01575 5.08617 5.15358 5.22099 5.24880 5.26987 5.39274 5.41896 5.53664 5.57476 5.76067 5.82666 5.91201 6.14578 6.22968 6.27913 6.84353 6.97946 7.58813 8.61959 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.023781 B = 0.002782 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.144878 B =10061.590703 C =10678.057502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.547 5.547 3 C 0.114 3.886 4 C -0.142 4.142 5 C -0.060 4.060 6 C -0.190 4.190 7 C 0.120 3.880 8 O -0.245 6.245 9 C -0.399 4.399 10 H 0.078 0.922 11 C 0.009 3.991 12 N -0.925 5.925 13 Si 0.973 3.027 14 H -0.265 1.265 15 H -0.267 1.267 16 H -0.262 1.262 17 C -0.237 4.237 18 C -0.055 4.055 19 C 0.069 3.931 20 C -0.082 4.082 21 H 0.061 0.939 22 C -0.102 4.102 23 C -0.127 4.127 24 C -0.149 4.149 25 C 0.104 3.896 26 H 0.071 0.929 27 O -0.586 6.586 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.150 0.850 34 H 0.130 0.870 35 H 0.285 0.715 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.078 -13.803 -24.797 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.271 5.271 3 C -0.013 4.013 4 C -0.143 4.143 5 C -0.078 4.078 6 C -0.209 4.209 7 C 0.072 3.928 8 O -0.153 6.153 9 C -0.476 4.476 10 H 0.096 0.904 11 C -0.189 4.189 12 N -0.566 5.566 13 Si 0.794 3.206 14 H -0.190 1.190 15 H -0.192 1.192 16 H -0.186 1.186 17 C -0.256 4.256 18 C -0.074 4.074 19 C -0.059 4.059 20 C -0.101 4.101 21 H 0.079 0.921 22 C -0.140 4.140 23 C -0.165 4.165 24 C -0.186 4.186 25 C 0.045 3.955 26 H 0.089 0.911 27 O -0.395 6.395 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.168 0.832 34 H 0.147 0.853 35 H 0.094 0.906 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -0.067 -13.463 -23.625 27.191 hybrid contribution -0.048 0.456 -0.056 0.462 sum -0.115 -13.007 -23.681 27.018 Atomic orbital electron populations 1.22458 0.86683 1.02716 1.00763 1.61870 1.08507 1.13125 1.43610 1.20825 1.00102 0.87815 0.92579 1.19594 0.96027 1.02477 0.96206 1.20908 0.95977 0.94881 0.96030 1.20487 1.00646 1.07515 0.92281 1.19657 0.94097 0.92346 0.86750 1.83511 1.50209 1.64370 1.17163 1.20697 1.03446 1.36688 0.86737 0.90399 1.25303 1.02221 0.98180 0.93212 1.69736 1.39077 1.46488 1.01281 0.85194 0.78170 0.78684 0.78504 1.19020 1.19172 1.18640 1.21246 0.98776 1.05750 0.99870 1.20807 0.99181 0.96126 0.91284 1.22189 0.94798 0.97998 0.90892 1.21712 0.95369 0.98671 0.94388 0.92053 1.22264 0.98822 0.95977 0.96941 1.22567 0.98337 0.99326 0.96244 1.23051 1.02605 0.96841 0.96126 1.22478 0.87057 0.90664 0.95293 0.91086 1.86532 1.44275 1.54874 1.53801 0.90860 0.91945 0.94432 0.90569 0.93102 0.83210 0.85252 0.90570 0.87762 0.85791 0.94139 0.89409 0.93374 0.91092 0.90903 0.92627 0.89614 0.90248 0.75799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.26 127.69 1.18 1.61 16 2 N -0.55 -11.95 4.47 -927.05 -4.14 -16.09 16 3 C 0.11 2.73 4.94 85.56 0.42 3.16 16 4 C -0.14 -4.40 4.90 -19.83 -0.10 -4.50 16 5 C -0.06 -1.83 7.86 22.25 0.18 -1.65 16 6 C -0.19 -7.31 9.99 22.39 0.22 -7.09 16 7 C 0.12 5.77 6.65 22.57 0.15 5.92 16 8 O -0.24 -13.59 8.59 -22.84 -0.20 -13.79 16 9 C -0.40 -24.12 9.95 67.92 0.68 -23.44 16 10 H 0.08 4.96 5.43 -2.91 -0.02 4.95 16 11 C 0.01 0.53 5.49 84.83 0.47 0.99 16 12 N -0.92 -56.33 13.96 21.61 0.30 -56.03 16 13 Si 0.97 46.13 28.62 68.60 1.96 48.10 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 15 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.26 -12.37 7.11 99.48 0.71 -11.67 16 17 C -0.24 -10.87 9.17 22.39 0.21 -10.67 16 18 C -0.06 -2.04 9.69 22.25 0.22 -1.83 16 19 C 0.07 1.18 4.05 86.30 0.35 1.53 16 20 C -0.08 -1.54 2.80 -10.07 -0.03 -1.57 16 21 H 0.06 1.47 6.53 -2.39 -0.02 1.45 16 22 C -0.10 -2.00 6.17 31.79 0.20 -1.80 16 23 C -0.13 -2.07 6.93 32.01 0.22 -1.85 16 24 C -0.15 -1.79 6.54 31.67 0.21 -1.58 16 25 C 0.10 1.50 3.92 31.32 0.12 1.62 16 26 H 0.07 0.80 7.67 -2.38 -0.02 0.78 16 27 O -0.59 -9.60 13.22 -148.98 -1.97 -11.57 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.46 5.63 -2.39 -0.01 1.44 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 1.87 6.54 -2.39 -0.02 1.86 16 32 H 0.05 1.07 8.06 -2.39 -0.02 1.05 16 33 H 0.15 3.44 7.93 -2.91 -0.02 3.42 16 34 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.10 5.29 5.64 -2.91 -0.02 5.28 16 37 H 0.12 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.04 0.66 8.00 -2.39 -0.02 0.64 16 39 H 0.09 1.25 7.83 -2.39 -0.02 1.23 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.33 7.78 -2.39 -0.02 1.31 16 42 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 0.79 8.05 -2.39 -0.02 0.77 16 46 H 0.39 2.84 9.08 -74.06 -0.67 2.16 16 Total: -1.00 -69.70 365.94 0.95 -68.76 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.30 Total: 21.78 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 4.69 Total: -41.16 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -3.84 Total: -72.12 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -2.17 Total: -25.36 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.96 Total: 48.10 kcal Total: -69.70 0.95 -68.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270225009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.611 kcal (2) G-P(sol) polarization free energy of solvation -69.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds