Wall clock time and date at job start Tue Mar 31 2020 08:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46505 * 109.46971 * 2 1 4 4 C 1.46497 * 119.99974 * 274.86369 * 3 2 1 5 5 C 1.50706 * 109.47092 * 276.95422 * 4 3 2 6 6 H 1.08009 * 119.99586 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00072 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99932 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 119.99867 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47233 * 90.00394 * 9 7 5 11 11 H 1.48502 * 109.46776 * 210.00031 * 9 7 5 12 12 H 1.48496 * 109.47480 * 329.99842 * 9 7 5 13 13 C 1.34782 * 119.99877 * 94.86218 * 3 2 1 14 14 O 1.21280 * 120.00199 * 5.73572 * 13 3 2 15 15 C 1.50702 * 119.99491 * 185.73776 * 13 3 2 16 16 C 1.53007 * 109.46822 * 285.65496 * 15 13 3 17 17 O 1.42893 * 109.47405 * 45.65909 * 15 13 3 18 18 C 1.53002 * 109.46659 * 165.66417 * 15 13 3 19 19 H 1.08997 * 109.47477 * 64.66000 * 18 15 13 20 20 C 1.53004 * 109.46847 * 184.66711 * 18 15 13 21 21 C 1.50704 * 109.46628 * 304.65944 * 18 15 13 22 22 C 1.38232 * 120.00424 * 289.93805 * 21 18 15 23 23 C 1.38232 * 120.00208 * 179.79012 * 22 21 18 24 24 C 1.38229 * 119.99746 * 0.44634 * 23 22 21 25 25 C 1.38240 * 120.00353 * 359.80855 * 24 23 22 26 26 C 1.38233 * 119.99463 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.46757 * 184.99533 * 1 2 3 28 28 H 1.08998 * 109.47545 * 305.00166 * 1 2 3 29 29 H 1.09009 * 109.46866 * 65.00148 * 1 2 3 30 30 H 1.09001 * 109.47702 * 240.00118 * 2 1 3 31 31 H 1.08995 * 109.47003 * 119.99374 * 2 1 3 32 32 H 1.08997 * 109.47458 * 36.95128 * 4 3 2 33 33 H 1.08993 * 109.47118 * 156.95969 * 4 3 2 34 34 H 0.96992 * 120.00353 * 179.97438 * 8 7 5 35 35 H 1.08999 * 109.47123 * 295.07364 * 16 15 13 36 36 H 1.09001 * 109.46970 * 55.07314 * 16 15 13 37 37 H 1.08999 * 109.46999 * 175.07234 * 16 15 13 38 38 H 0.96701 * 114.00014 * 62.10257 * 17 15 13 39 39 H 1.09002 * 109.46696 * 304.67860 * 20 18 15 40 40 H 1.08995 * 109.47480 * 64.67586 * 20 18 15 41 41 H 1.09001 * 109.46938 * 184.67972 * 20 18 15 42 42 H 1.08002 * 119.99835 * 359.97438 * 22 21 18 43 43 H 1.07997 * 120.00231 * 180.27493 * 23 22 21 44 44 H 1.08008 * 119.99810 * 179.83371 * 24 23 22 45 45 H 1.07997 * 120.00281 * 180.02562 * 25 24 23 46 46 H 1.08005 * 119.99444 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1611 2.1077 -1.2641 5 6 3.4784 1.7504 -1.9029 6 1 4.1427 1.0516 -1.4160 7 6 3.8352 2.3146 -3.1093 8 7 4.9846 2.0024 -3.6669 9 14 2.6860 3.5225 -3.9516 10 1 2.9978 4.9015 -3.4973 11 1 2.8662 3.4334 -5.4229 12 1 1.2803 3.1929 -3.6043 13 6 2.3362 1.9837 1.1631 14 8 2.3180 1.3518 2.1981 15 6 2.7143 3.4424 1.1773 16 6 4.1255 3.6090 0.6100 17 8 1.7892 4.1821 0.3780 18 6 2.6777 3.9646 2.6149 19 1 3.4410 3.4578 3.2052 20 6 2.9474 5.4707 2.6174 21 6 1.3203 3.6965 3.2123 22 6 0.2171 4.3988 2.7646 23 6 -1.0286 4.1497 3.3095 24 6 -1.1696 3.2048 4.3085 25 6 -0.0655 2.5061 4.7600 26 6 1.1795 2.7521 4.2119 27 1 -0.3633 -1.0237 0.0895 28 1 -0.3634 0.5894 0.8418 29 1 -0.3633 0.4343 -0.9315 30 1 1.8935 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.3463 1.8342 -1.9345 33 1 2.1294 3.1802 -1.0724 34 1 5.2355 2.3990 -4.5158 35 1 4.8421 3.1178 1.2683 36 1 4.1743 3.1580 -0.3811 37 1 4.3656 4.6698 0.5387 38 1 0.8775 4.1482 0.6986 39 1 3.8913 5.6716 2.1106 40 1 2.1393 5.9855 2.0977 41 1 3.0038 5.8280 3.6457 42 1 0.3279 5.1401 1.9870 43 1 -1.8913 4.6953 2.9567 44 1 -2.1425 3.0121 4.7362 45 1 -0.1757 1.7676 5.5402 46 1 2.0422 2.2065 4.5649 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271081804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:43 Heat of formation + Delta-G solvation = -53.208975 kcal Electronic energy + Delta-G solvation = -27368.413359 eV Core-core repulsion = 23837.412466 eV Total energy + Delta-G solvation = -3531.000894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.58162 -38.72126 -36.81767 -35.43042 -33.47312 -32.68335 -31.14565 -30.72204 -30.09428 -28.30587 -27.64978 -24.96558 -23.33704 -22.63177 -22.31022 -21.62858 -20.01567 -18.78309 -17.12502 -16.95905 -16.80113 -15.95300 -15.47471 -15.24497 -14.71478 -14.37067 -14.16858 -13.99237 -13.62580 -13.21628 -13.04750 -12.91323 -12.69761 -12.48790 -12.38405 -12.15019 -11.98792 -11.90629 -11.65910 -11.55067 -11.40055 -11.27438 -11.11188 -10.98876 -10.72922 -10.60355 -10.53937 -10.41874 -10.14698 -9.83404 -9.43046 -8.89857 -8.75977 -8.60838 -8.31120 -7.64357 -6.16861 -4.14983 1.47462 1.57631 3.23683 3.26442 3.32656 3.35760 3.80725 3.92351 4.34064 4.51632 4.77912 4.92511 5.07875 5.10428 5.15354 5.16945 5.23309 5.51923 5.56286 5.62529 5.63719 5.72619 5.77125 5.81503 5.84123 5.95641 6.09548 6.17448 6.21625 6.25031 6.26775 6.37311 6.41933 6.45030 6.59075 6.60337 6.65362 6.67685 6.85214 7.02110 7.15008 7.19678 7.47156 7.55874 7.77777 8.18621 8.49388 8.85147 8.93483 9.43651 10.95325 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.005658 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.124413 B = 4947.887304 C = 5434.680282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.110 3.890 3 N -0.577 5.577 4 C 0.177 3.823 5 C -0.534 4.534 6 H 0.076 0.924 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.872 3.128 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 C 0.494 3.506 14 O -0.560 6.560 15 C 0.138 3.862 16 C -0.166 4.166 17 O -0.537 6.537 18 C -0.066 4.066 19 H 0.091 0.909 20 C -0.140 4.140 21 C -0.068 4.068 22 C -0.136 4.136 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.124 4.124 26 C -0.075 4.075 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.022 0.978 33 H 0.084 0.916 34 H 0.265 0.735 35 H 0.063 0.937 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.367 0.633 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.125 0.875 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.116 0.884 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.565 4.784 12.599 16.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.014 4.014 3 N -0.307 5.307 4 C 0.057 3.943 5 C -0.573 4.573 6 H 0.094 0.906 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.699 3.301 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.189 1.189 13 C 0.281 3.719 14 O -0.440 6.440 15 C 0.094 3.906 16 C -0.223 4.223 17 O -0.345 6.345 18 C -0.085 4.085 19 H 0.109 0.891 20 C -0.197 4.197 21 C -0.068 4.068 22 C -0.154 4.154 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.093 4.093 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.040 0.960 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.217 0.783 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.930 4.605 12.594 16.111 hybrid contribution -1.029 0.290 -0.425 1.150 sum -9.959 4.895 12.169 16.469 Atomic orbital electron populations 1.22094 0.96963 1.01199 1.01657 1.21276 0.93151 0.84102 1.02840 1.47924 1.62030 1.13164 1.07537 1.20516 0.97214 0.95700 0.80879 1.21355 1.02436 1.27798 1.05676 0.90614 1.24843 0.94936 0.96276 0.96645 1.69902 1.21358 1.43597 1.18225 0.86892 0.82019 0.82355 0.78812 1.19587 1.21322 1.18941 1.21105 0.77255 0.90069 0.83510 1.90581 1.54484 1.66501 1.32454 1.21283 0.92555 0.87119 0.89638 1.22274 0.90584 1.03154 1.06281 1.86642 1.20976 1.73427 1.53487 1.20662 0.94879 0.97435 0.95501 0.89054 1.21829 1.02652 0.93804 1.01416 1.19797 0.94721 0.96082 0.96219 1.21123 0.92684 1.00656 1.00962 1.21030 0.97066 0.98669 0.97373 1.21062 0.98376 0.97274 0.97965 1.21122 0.93003 0.99710 1.00374 1.21033 0.97490 0.95615 0.95131 0.92397 0.93112 0.92718 0.90364 0.90791 0.95992 0.89932 0.92476 0.91784 0.85890 0.91625 0.78269 0.91633 0.91929 0.92769 0.85687 0.86450 0.86704 0.86572 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 10.24 37.16 0.38 -2.17 16 2 C 0.11 2.06 6.24 -4.04 -0.03 2.03 16 3 N -0.58 -11.91 2.46 -175.06 -0.43 -12.34 16 4 C 0.18 4.00 3.59 -5.19 -0.02 3.98 16 5 C -0.53 -14.03 7.52 -34.44 -0.26 -14.29 16 6 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 7 C 0.08 2.06 5.47 -17.82 -0.10 1.97 16 8 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 9 Si 0.87 20.40 27.47 -169.99 -4.67 15.73 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 13 C 0.49 9.83 6.14 -10.98 -0.07 9.76 16 14 O -0.56 -11.62 13.05 5.56 0.07 -11.55 16 15 C 0.14 2.40 0.40 -91.77 -0.04 2.37 16 16 C -0.17 -3.09 8.21 37.16 0.31 -2.79 16 17 O -0.54 -9.19 8.89 -35.23 -0.31 -9.51 16 18 C -0.07 -0.97 1.68 -91.77 -0.15 -1.13 16 19 H 0.09 1.40 7.85 -51.93 -0.41 0.99 16 20 C -0.14 -1.76 8.56 37.16 0.32 -1.44 16 21 C -0.07 -0.99 3.76 -104.62 -0.39 -1.38 16 22 C -0.14 -1.78 7.42 -39.59 -0.29 -2.07 16 23 C -0.12 -1.48 10.05 -39.59 -0.40 -1.88 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 26 C -0.07 -1.09 7.91 -39.58 -0.31 -1.41 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 30 H 0.08 1.50 8.11 -51.93 -0.42 1.08 16 31 H 0.07 1.40 7.22 -51.93 -0.37 1.03 16 32 H 0.02 0.51 7.18 -51.93 -0.37 0.13 16 33 H 0.08 1.84 3.51 -51.04 -0.18 1.66 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.12 2.76 4.35 -51.93 -0.23 2.54 16 37 H 0.06 1.09 6.70 -51.93 -0.35 0.75 16 38 H 0.37 5.51 5.51 46.52 0.26 5.76 16 39 H 0.06 0.82 6.45 -51.93 -0.33 0.48 16 40 H 0.06 0.77 6.30 -51.93 -0.33 0.44 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.13 1.47 5.40 -52.49 -0.28 1.19 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.12 1.83 7.76 -52.48 -0.41 1.43 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -29.62 351.42 -7.52 -37.13 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.40 Total: 12.77 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -1.85 Total: -12.40 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.34 Total: -37.47 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.24 Total: -21.06 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.62 -7.52 -37.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271081804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.076 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds