Wall clock time and date at job start Tue Mar 31 2020 08:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47217 * 2 1 4 4 C 1.46498 * 120.00465 * 265.39442 * 3 2 1 5 5 C 1.50701 * 109.47403 * 276.49669 * 4 3 2 6 6 H 1.07994 * 119.99645 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00083 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00106 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99702 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47136 * 90.00359 * 9 7 5 11 11 H 1.48506 * 109.46857 * 209.99814 * 9 7 5 12 12 H 1.48491 * 109.47413 * 329.99710 * 9 7 5 13 13 C 1.34781 * 119.99811 * 85.39811 * 3 2 1 14 14 O 1.21285 * 120.00174 * 5.31097 * 13 3 2 15 15 C 1.50699 * 120.00017 * 185.58260 * 13 3 2 16 16 C 1.53002 * 109.47143 * 283.62176 * 15 13 3 17 17 O 1.42901 * 109.46929 * 43.61955 * 15 13 3 18 18 C 1.52996 * 109.47108 * 163.62135 * 15 13 3 19 19 H 1.08999 * 109.47067 * 60.00641 * 18 15 13 20 20 C 1.53002 * 109.47153 * 300.00036 * 18 15 13 21 21 C 1.50709 * 109.47109 * 179.97438 * 18 15 13 22 22 C 1.38236 * 119.99482 * 59.72818 * 21 18 15 23 23 C 1.38234 * 119.99421 * 179.79078 * 22 21 18 24 24 C 1.38241 * 120.00325 * 0.43705 * 23 22 21 25 25 C 1.38232 * 119.99574 * 359.81573 * 24 23 22 26 26 C 1.38230 * 120.00080 * 240.00097 * 21 18 15 27 27 H 1.08993 * 109.47576 * 184.89522 * 1 2 3 28 28 H 1.09000 * 109.47028 * 304.89972 * 1 2 3 29 29 H 1.09006 * 109.46873 * 64.89663 * 1 2 3 30 30 H 1.09001 * 109.46996 * 240.00223 * 2 1 3 31 31 H 1.09001 * 109.46720 * 120.00325 * 2 1 3 32 32 H 1.09009 * 109.46734 * 36.49312 * 4 3 2 33 33 H 1.09000 * 109.47209 * 156.48669 * 4 3 2 34 34 H 0.97007 * 119.99917 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.47151 * 66.80167 * 16 15 13 36 36 H 1.09002 * 109.47243 * 186.79962 * 16 15 13 37 37 H 1.08998 * 109.47210 * 306.79832 * 16 15 13 38 38 H 0.96695 * 113.99747 * 60.00184 * 17 15 13 39 39 H 1.08997 * 109.46936 * 299.99991 * 20 18 15 40 40 H 1.08993 * 109.46830 * 60.00323 * 20 18 15 41 41 H 1.08998 * 109.46733 * 180.02562 * 20 18 15 42 42 H 1.07998 * 120.00241 * 359.97438 * 22 21 18 43 43 H 1.07997 * 119.99930 * 180.27353 * 23 22 21 44 44 H 1.07993 * 120.00394 * 179.83562 * 24 23 22 45 45 H 1.07997 * 120.00111 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00127 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3586 2.0379 -1.2646 5 6 3.7616 1.6607 -1.6650 6 1 4.3419 0.9983 -1.0398 7 6 4.3043 2.1611 -2.8295 8 7 5.5288 1.8323 -3.1787 9 14 3.3001 3.3062 -3.9111 10 1 3.5313 4.7121 -3.4923 11 1 3.7129 3.1375 -5.3277 12 1 1.8582 2.9793 -3.7734 13 6 2.1547 2.0477 1.1635 14 8 1.9659 1.4754 2.2160 15 6 2.5357 3.5057 1.1565 16 6 4.0303 3.6408 0.8585 17 8 1.7857 4.1891 0.1502 18 6 2.2309 4.1191 2.5245 19 1 2.8031 3.5978 3.2920 20 6 0.7363 3.9840 2.8225 21 6 2.6125 5.5771 2.5177 22 6 2.0184 6.4427 1.6185 23 6 2.3653 7.7808 1.6151 24 6 3.3129 8.2515 2.5048 25 6 3.9107 7.3848 3.4004 26 6 3.5607 6.0475 3.4067 27 1 -0.3634 -1.0238 0.0877 28 1 -0.3633 0.5880 0.8428 29 1 -0.3633 0.4360 -0.9307 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6613 1.7182 -2.0391 33 1 2.2940 3.1190 -1.1414 34 1 5.9105 2.1841 -3.9982 35 1 4.2282 3.3149 -0.1627 36 1 4.3308 4.6825 0.9720 37 1 4.5969 3.0215 1.5538 38 1 0.8280 4.1451 0.2757 39 1 0.1643 4.5053 2.0550 40 1 0.4608 2.9295 2.8276 41 1 0.5191 4.4214 3.7970 42 1 1.2811 6.0742 0.9207 43 1 1.8979 8.4580 0.9156 44 1 3.5858 9.2964 2.5004 45 1 4.6513 7.7524 4.0952 46 1 4.0278 5.3704 4.1065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271081807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:57 Heat of formation + Delta-G solvation = -55.029642 kcal Electronic energy + Delta-G solvation = -27020.413056 eV Core-core repulsion = 23489.333212 eV Total energy + Delta-G solvation = -3531.079844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.55730 -38.91261 -36.77407 -35.52358 -33.42010 -32.68313 -31.06467 -30.69250 -29.74426 -29.13657 -27.62380 -24.05532 -23.80159 -22.61230 -22.39520 -21.88067 -20.03298 -18.76318 -17.33891 -16.95740 -16.52123 -15.97883 -15.48774 -15.02096 -14.79439 -14.53139 -14.20379 -14.04076 -13.68373 -13.34014 -13.24959 -12.96040 -12.60570 -12.52780 -12.46043 -12.12599 -12.03833 -11.86729 -11.63214 -11.54703 -11.45361 -11.30694 -11.17301 -10.91243 -10.70530 -10.65068 -10.58793 -10.41721 -10.20115 -9.88500 -9.43846 -8.79185 -8.73600 -8.55792 -8.44785 -7.70890 -6.15714 -4.13935 1.50214 1.57338 3.14330 3.26281 3.32630 3.34902 3.71604 3.98235 4.34386 4.44988 4.78891 4.88870 5.10272 5.13817 5.17213 5.18451 5.30717 5.31325 5.51434 5.56409 5.63639 5.71473 5.73052 5.78728 5.89399 5.97103 6.12245 6.14464 6.20453 6.24875 6.29673 6.33100 6.39580 6.47440 6.55146 6.61247 6.63981 6.67048 6.83630 6.99930 7.15369 7.16325 7.42859 7.55960 7.73820 8.14625 8.47504 8.80754 8.91107 9.44462 10.96660 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.006155 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.092519 B = 4547.709056 C = 5850.224229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.110 3.890 3 N -0.575 5.575 4 C 0.172 3.828 5 C -0.534 4.534 6 H 0.075 0.925 7 C 0.076 3.924 8 N -0.894 5.894 9 Si 0.873 3.127 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.494 3.506 14 O -0.565 6.565 15 C 0.139 3.861 16 C -0.155 4.155 17 O -0.529 6.529 18 C -0.063 4.063 19 H 0.093 0.907 20 C -0.151 4.151 21 C -0.064 4.064 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.125 4.125 26 C -0.117 4.117 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.022 0.978 33 H 0.089 0.911 34 H 0.265 0.735 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.367 0.633 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.757 8.414 9.538 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.013 4.013 3 N -0.304 5.304 4 C 0.052 3.948 5 C -0.572 4.572 6 H 0.093 0.907 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.700 3.300 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.190 1.190 13 C 0.281 3.719 14 O -0.446 6.446 15 C 0.096 3.904 16 C -0.212 4.212 17 O -0.336 6.336 18 C -0.082 4.082 19 H 0.111 0.889 20 C -0.208 4.208 21 C -0.064 4.064 22 C -0.116 4.116 23 C -0.142 4.142 24 C -0.147 4.147 25 C -0.143 4.143 26 C -0.135 4.135 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.215 0.785 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.148 0.852 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.118 8.249 9.666 15.079 hybrid contribution -0.728 0.389 -0.622 1.033 sum -8.846 8.638 9.044 15.318 Atomic orbital electron populations 1.22104 0.96885 1.01391 1.01609 1.21292 0.93144 0.83990 1.02866 1.47997 1.61701 1.12942 1.07787 1.20674 0.96376 0.97252 0.80530 1.21348 0.97562 1.30456 1.07833 0.90717 1.24839 0.94732 0.96032 0.97152 1.69901 1.14378 1.44502 1.24386 0.86892 0.81103 0.82090 0.79960 1.19593 1.21384 1.18972 1.21103 0.77323 0.89744 0.83721 1.90589 1.52807 1.70066 1.31170 1.21256 0.94989 0.87139 0.87045 1.22085 0.89770 1.02200 1.07124 1.86672 1.21486 1.76204 1.49233 1.20568 0.98063 0.91848 0.97710 0.88902 1.21944 0.94254 1.03251 1.01376 1.19706 0.96256 0.94753 0.95726 1.21249 1.00129 0.92703 0.97494 1.21142 0.98291 0.95849 0.98957 1.21078 0.97600 0.99393 0.96612 1.21043 1.00199 0.93668 0.99398 1.21066 0.97631 0.95615 0.99182 0.92301 0.92934 0.92786 0.90051 0.91185 0.95981 0.89356 0.92512 0.86616 0.91975 0.91825 0.78483 0.93068 0.90591 0.92366 0.85156 0.86484 0.86690 0.86528 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.21 37.16 0.38 -2.01 16 2 C 0.11 1.99 6.14 -4.04 -0.02 1.96 16 3 N -0.58 -11.46 2.47 -175.06 -0.43 -11.89 16 4 C 0.17 3.77 3.56 -5.19 -0.02 3.75 16 5 C -0.53 -13.95 7.77 -34.44 -0.27 -14.22 16 6 H 0.07 2.20 8.06 -52.49 -0.42 1.77 16 7 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 8 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 9 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 13 C 0.49 9.53 5.99 -10.98 -0.07 9.46 16 14 O -0.57 -11.65 14.07 5.55 0.08 -11.57 16 15 C 0.14 2.37 0.39 -91.77 -0.04 2.34 16 16 C -0.15 -2.96 8.50 37.16 0.32 -2.64 16 17 O -0.53 -8.49 7.02 -35.23 -0.25 -8.74 16 18 C -0.06 -0.92 1.68 -91.77 -0.15 -1.08 16 19 H 0.09 1.45 7.66 -51.93 -0.40 1.05 16 20 C -0.15 -1.98 8.40 37.16 0.31 -1.66 16 21 C -0.06 -0.90 3.41 -104.62 -0.36 -1.25 16 22 C -0.10 -1.32 8.31 -39.58 -0.33 -1.65 16 23 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 24 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 25 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 26 C -0.12 -1.53 9.67 -39.59 -0.38 -1.91 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 31 H 0.07 1.29 7.49 -51.93 -0.39 0.90 16 32 H 0.02 0.49 7.17 -51.92 -0.37 0.12 16 33 H 0.09 1.90 3.39 -42.02 -0.14 1.76 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 2.62 4.80 -51.93 -0.25 2.37 16 36 H 0.06 1.12 6.99 -51.93 -0.36 0.76 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.37 4.68 7.00 56.18 0.39 5.07 16 39 H 0.05 0.58 6.04 -51.93 -0.31 0.26 16 40 H 0.08 1.12 6.12 -51.93 -0.32 0.81 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.13 1.66 5.50 -52.49 -0.29 1.37 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.40 7.95 -52.49 -0.42 0.98 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -30.05 354.76 -7.32 -37.37 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.25 Total: 11.80 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: -1.92 Total: -12.70 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.34 Total: -37.18 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.17 Total: -20.31 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.05 -7.32 -37.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271081807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.663 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds