Wall clock time and date at job start Tue Mar 31 2020 08:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47217 * 2 1 4 4 C 1.46498 * 120.00465 * 265.39442 * 3 2 1 5 5 C 1.50701 * 109.47403 * 276.49669 * 4 3 2 6 6 H 1.07994 * 119.99645 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00083 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00106 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99702 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47136 * 90.00359 * 9 7 5 11 11 H 1.48506 * 109.46857 * 209.99814 * 9 7 5 12 12 H 1.48491 * 109.47413 * 329.99710 * 9 7 5 13 13 C 1.34781 * 119.99811 * 85.39811 * 3 2 1 14 14 O 1.21285 * 120.00174 * 5.31097 * 13 3 2 15 15 C 1.50699 * 120.00017 * 185.58260 * 13 3 2 16 16 C 1.53002 * 109.47143 * 283.62176 * 15 13 3 17 17 O 1.42901 * 109.46929 * 43.61955 * 15 13 3 18 18 C 1.52996 * 109.47108 * 163.62135 * 15 13 3 19 19 H 1.08999 * 109.47067 * 60.00641 * 18 15 13 20 20 C 1.53002 * 109.47153 * 300.00036 * 18 15 13 21 21 C 1.50709 * 109.47109 * 179.97438 * 18 15 13 22 22 C 1.38236 * 119.99482 * 59.72818 * 21 18 15 23 23 C 1.38234 * 119.99421 * 179.79078 * 22 21 18 24 24 C 1.38241 * 120.00325 * 0.43705 * 23 22 21 25 25 C 1.38232 * 119.99574 * 359.81573 * 24 23 22 26 26 C 1.38230 * 120.00080 * 240.00097 * 21 18 15 27 27 H 1.08993 * 109.47576 * 184.89522 * 1 2 3 28 28 H 1.09000 * 109.47028 * 304.89972 * 1 2 3 29 29 H 1.09006 * 109.46873 * 64.89663 * 1 2 3 30 30 H 1.09001 * 109.46996 * 240.00223 * 2 1 3 31 31 H 1.09001 * 109.46720 * 120.00325 * 2 1 3 32 32 H 1.09009 * 109.46734 * 36.49312 * 4 3 2 33 33 H 1.09000 * 109.47209 * 156.48669 * 4 3 2 34 34 H 0.97007 * 119.99917 * 179.97438 * 8 7 5 35 35 H 1.09006 * 109.47151 * 66.80167 * 16 15 13 36 36 H 1.09002 * 109.47243 * 186.79962 * 16 15 13 37 37 H 1.08998 * 109.47210 * 306.79832 * 16 15 13 38 38 H 0.96695 * 113.99747 * 60.00184 * 17 15 13 39 39 H 1.08997 * 109.46936 * 299.99991 * 20 18 15 40 40 H 1.08993 * 109.46830 * 60.00323 * 20 18 15 41 41 H 1.08998 * 109.46733 * 180.02562 * 20 18 15 42 42 H 1.07998 * 120.00241 * 359.97438 * 22 21 18 43 43 H 1.07997 * 119.99930 * 180.27353 * 23 22 21 44 44 H 1.07993 * 120.00394 * 179.83562 * 24 23 22 45 45 H 1.07997 * 120.00111 * 179.97438 * 25 24 23 46 46 H 1.07999 * 120.00127 * 359.97438 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3586 2.0379 -1.2646 5 6 3.7616 1.6607 -1.6650 6 1 4.3419 0.9983 -1.0398 7 6 4.3043 2.1611 -2.8295 8 7 5.5288 1.8323 -3.1787 9 14 3.3001 3.3062 -3.9111 10 1 3.5313 4.7121 -3.4923 11 1 3.7129 3.1375 -5.3277 12 1 1.8582 2.9793 -3.7734 13 6 2.1547 2.0477 1.1635 14 8 1.9659 1.4754 2.2160 15 6 2.5357 3.5057 1.1565 16 6 4.0303 3.6408 0.8585 17 8 1.7857 4.1891 0.1502 18 6 2.2309 4.1191 2.5245 19 1 2.8031 3.5978 3.2920 20 6 0.7363 3.9840 2.8225 21 6 2.6125 5.5771 2.5177 22 6 2.0184 6.4427 1.6185 23 6 2.3653 7.7808 1.6151 24 6 3.3129 8.2515 2.5048 25 6 3.9107 7.3848 3.4004 26 6 3.5607 6.0475 3.4067 27 1 -0.3634 -1.0238 0.0877 28 1 -0.3633 0.5880 0.8428 29 1 -0.3633 0.4360 -0.9307 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6613 1.7182 -2.0391 33 1 2.2940 3.1190 -1.1414 34 1 5.9105 2.1841 -3.9982 35 1 4.2282 3.3149 -0.1627 36 1 4.3308 4.6825 0.9720 37 1 4.5969 3.0215 1.5538 38 1 0.8280 4.1451 0.2757 39 1 0.1643 4.5053 2.0550 40 1 0.4608 2.9295 2.8276 41 1 0.5191 4.4214 3.7970 42 1 1.2811 6.0742 0.9207 43 1 1.8979 8.4580 0.9156 44 1 3.5858 9.2964 2.5004 45 1 4.6513 7.7524 4.0952 46 1 4.0278 5.3704 4.1065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271081807.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:46:53 Heat of formation + Delta-G solvation = -72.585277 kcal Electronic energy + Delta-G solvation = -27021.174326 eV Core-core repulsion = 23489.333212 eV Total energy + Delta-G solvation = -3531.841113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -41.92778 -40.06367 -38.08187 -37.13006 -34.72301 -34.53526 -32.53126 -31.66139 -31.13330 -30.19254 -29.46011 -25.49648 -24.93460 -24.44514 -23.39228 -23.14649 -21.20511 -20.21514 -19.00526 -18.76428 -17.51749 -17.46942 -16.85735 -16.39809 -16.16904 -15.92895 -15.59340 -15.37593 -14.88777 -14.74733 -14.53895 -14.24569 -14.08629 -13.98696 -13.59887 -13.46144 -13.40999 -13.25220 -13.07213 -12.95771 -12.89087 -12.67477 -12.55513 -12.32190 -12.21510 -12.01232 -11.82410 -11.80489 -11.67994 -11.63580 -11.14709 -10.72522 -10.10520 -9.68586 -9.48622 -9.37500 -8.25533 -6.27594 0.53979 0.63032 1.42171 1.44618 1.52539 1.59126 2.25100 2.38586 2.98863 3.05971 3.18593 3.47416 3.70373 3.92465 4.02580 4.16320 4.20900 4.26474 4.39129 4.40695 4.45022 4.53149 4.57658 4.72592 4.77168 4.79876 4.82467 4.84401 4.96352 4.97940 5.02048 5.10451 5.18270 5.20253 5.28368 5.31330 5.34066 5.45524 5.58926 5.68301 5.73757 5.79077 5.84962 6.21591 6.23426 6.52676 6.67941 6.78160 7.23645 7.36962 8.90665 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012643 B = 0.006155 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.092519 B = 4547.709056 C = 5850.224229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.103 3.897 3 N -0.582 5.582 4 C 0.184 3.816 5 C -0.525 4.525 6 H 0.025 0.975 7 C 0.019 3.981 8 N -0.945 5.945 9 Si 0.938 3.062 10 H -0.264 1.264 11 H -0.290 1.290 12 H -0.239 1.239 13 C 0.491 3.509 14 O -0.579 6.579 15 C 0.150 3.850 16 C -0.148 4.148 17 O -0.532 6.532 18 C -0.053 4.053 19 H 0.077 0.923 20 C -0.145 4.145 21 C -0.078 4.078 22 C -0.110 4.110 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.132 4.132 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.103 0.897 34 H 0.265 0.735 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.384 0.616 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 10.666 9.572 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 N -0.311 5.311 4 C 0.063 3.937 5 C -0.564 4.564 6 H 0.043 0.957 7 C -0.179 4.179 8 N -0.586 5.586 9 Si 0.761 3.239 10 H -0.189 1.189 11 H -0.217 1.217 12 H -0.162 1.162 13 C 0.278 3.722 14 O -0.461 6.461 15 C 0.107 3.893 16 C -0.205 4.205 17 O -0.341 6.341 18 C -0.073 4.073 19 H 0.096 0.904 20 C -0.202 4.202 21 C -0.078 4.078 22 C -0.128 4.128 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.150 4.150 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.235 0.765 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.483 10.488 9.724 17.733 hybrid contribution 0.086 -0.361 -0.537 0.653 sum -10.397 10.128 9.187 17.178 Atomic orbital electron populations 1.21984 0.93773 1.03024 1.01829 1.21436 0.95673 0.83014 1.01859 1.48058 1.61992 1.13673 1.07418 1.20488 0.93637 0.98135 0.81484 1.21473 0.99178 1.28830 1.06891 0.95654 1.25692 0.95685 0.97820 0.98750 1.70060 1.16609 1.46632 1.25259 0.85849 0.80757 0.79823 0.77440 1.18916 1.21668 1.16181 1.21555 0.76695 0.90711 0.83206 1.90578 1.53317 1.70700 1.31514 1.21054 0.93632 0.85898 0.88751 1.21923 0.91667 1.02416 1.04478 1.86583 1.22965 1.75596 1.48990 1.20427 0.99092 0.92348 0.95398 0.90415 1.21882 0.93131 1.02357 1.02791 1.19659 0.97267 0.94083 0.96810 1.21391 1.00491 0.93267 0.97611 1.21444 0.98398 0.95768 0.99387 1.21436 0.96929 1.00646 0.95893 1.21345 1.00435 0.93201 0.99767 1.21258 0.97757 0.96538 0.99443 0.89915 0.93170 0.92045 0.91036 0.92281 0.95215 0.88042 0.92564 0.90169 0.90958 0.92669 0.76451 0.91033 0.92420 0.91222 0.84587 0.84584 0.84271 0.84442 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 10.21 71.98 0.73 -3.36 16 2 C 0.10 3.70 6.14 86.38 0.53 4.23 16 3 N -0.58 -23.14 2.47 -826.14 -2.04 -25.18 16 4 C 0.18 7.93 3.56 85.63 0.30 8.24 16 5 C -0.53 -28.19 7.77 25.60 0.20 -27.99 16 6 H 0.03 1.57 8.06 -2.91 -0.02 1.55 16 7 C 0.02 1.03 5.47 84.65 0.46 1.49 16 8 N -0.95 -56.96 13.96 21.44 0.30 -56.66 16 9 Si 0.94 41.37 27.47 68.60 1.88 43.25 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.24 -9.45 6.54 99.48 0.65 -8.80 16 13 C 0.49 18.88 5.99 87.66 0.52 19.40 16 14 O -0.58 -23.97 14.07 -3.05 -0.04 -24.01 16 15 C 0.15 5.03 0.39 -11.54 0.00 5.03 16 16 C -0.15 -5.73 8.50 71.98 0.61 -5.12 16 17 O -0.53 -15.98 7.02 -148.98 -1.05 -17.03 16 18 C -0.05 -1.52 1.68 -11.54 -0.02 -1.54 16 19 H 0.08 2.43 7.66 -2.39 -0.02 2.41 16 20 C -0.14 -3.53 8.40 71.98 0.60 -2.92 16 21 C -0.08 -2.05 3.41 -19.86 -0.07 -2.12 16 22 C -0.11 -2.69 8.31 22.27 0.19 -2.51 16 23 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 24 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 25 C -0.13 -2.80 10.05 22.27 0.22 -2.57 16 26 C -0.13 -3.27 9.67 22.27 0.22 -3.06 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.07 2.67 8.04 -2.39 -0.02 2.65 16 31 H 0.06 2.22 7.49 -2.39 -0.02 2.20 16 32 H 0.03 1.26 7.17 -2.38 -0.02 1.24 16 33 H 0.10 4.20 3.39 3.89 0.01 4.21 16 34 H 0.27 15.05 8.31 -92.70 -0.77 14.27 16 35 H 0.08 3.73 4.80 -2.38 -0.01 3.71 16 36 H 0.07 2.61 6.99 -2.39 -0.02 2.59 16 37 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.38 8.65 7.00 -56.61 -0.40 8.25 16 39 H 0.07 1.42 6.04 -2.39 -0.01 1.41 16 40 H 0.06 1.63 6.12 -2.39 -0.01 1.62 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.14 3.07 5.50 -2.91 -0.02 3.05 16 43 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 44 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 46 H 0.12 2.82 7.95 -2.91 -0.02 2.79 16 Total: -1.00 -66.55 354.76 4.56 -61.99 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.55 Total: 35.59 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 4.95 Total: -17.95 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.74 Total: -81.84 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -1.09 Total: -41.04 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 1.88 Total: 43.25 kcal Total: -66.55 4.56 -61.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271081807.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.599 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds