Wall clock time and date at job start Tue Mar 31 2020 08:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47178 * 2 1 4 4 C 1.46903 * 111.00299 * 299.45851 * 3 2 1 5 5 C 1.50702 * 109.46914 * 293.96827 * 4 3 2 6 6 H 1.08005 * 120.00069 * 355.07593 * 5 4 3 7 7 C 1.37874 * 120.00181 * 175.07262 * 5 4 3 8 8 N 1.31521 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00347 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46840 * 59.99861 * 9 7 5 11 11 H 1.48491 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47097 * 300.00644 * 9 7 5 13 13 C 1.46900 * 110.99739 * 63.41011 * 3 2 1 14 14 C 1.50699 * 109.47499 * 66.04828 * 13 3 2 15 15 C 1.38282 * 119.95826 * 89.99594 * 14 13 3 16 16 C 1.38084 * 120.03489 * 180.02562 * 15 14 13 17 17 C 1.38845 * 119.98927 * 0.27161 * 16 15 14 18 18 C 1.38592 * 119.86730 * 359.40574 * 17 16 15 19 19 C 1.38215 * 119.95510 * 270.02213 * 14 13 3 20 20 C 1.50776 * 120.43307 * 180.47613 * 18 17 16 21 21 O 1.43081 * 109.30390 * 344.09242 * 20 18 17 22 22 C 1.43260 * 113.03770 * 48.57631 * 21 20 18 23 23 C 1.53000 * 109.61522 * 54.30212 * 22 21 20 24 24 C 1.52998 * 109.61592 * 174.65407 * 22 21 20 25 25 O 1.35972 * 119.59404 * 179.86585 * 17 16 15 26 26 H 1.08995 * 109.46935 * 301.28539 * 1 2 3 27 27 H 1.09003 * 109.47552 * 61.28631 * 1 2 3 28 28 H 1.09000 * 109.46722 * 181.28658 * 1 2 3 29 29 H 1.09000 * 109.46658 * 240.00153 * 2 1 3 30 30 H 1.08994 * 109.47023 * 120.00352 * 2 1 3 31 31 H 1.09008 * 109.47036 * 53.96170 * 4 3 2 32 32 H 1.08990 * 109.47649 * 173.96612 * 4 3 2 33 33 H 0.96992 * 120.00060 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.47184 * 306.04267 * 13 3 2 35 35 H 1.09003 * 109.47272 * 186.05065 * 13 3 2 36 36 H 1.08006 * 119.98398 * 0.04638 * 15 14 13 37 37 H 1.08001 * 120.00986 * 179.97438 * 16 15 14 38 38 H 1.08004 * 119.94757 * 359.96087 * 19 14 13 39 39 H 1.08998 * 109.50094 * 104.04190 * 20 18 17 40 40 H 1.09000 * 109.50107 * 224.14110 * 20 18 17 41 41 H 1.09001 * 109.47034 * 59.99600 * 23 22 21 42 42 H 1.08999 * 109.47355 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.47125 * 300.00275 * 23 22 21 44 44 H 1.08993 * 109.47459 * 59.99811 * 24 22 21 45 45 H 1.09000 * 109.47116 * 180.02562 * 24 22 21 46 46 H 1.09005 * 109.46614 * 300.00102 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5593 2.1062 -1.1941 5 6 2.1922 1.5018 -2.4211 6 1 2.9289 0.7187 -2.3186 7 6 1.8307 1.9486 -3.6743 8 7 0.9333 2.9019 -3.7991 9 14 2.6157 1.2000 -5.1952 10 1 2.3261 -0.2560 -5.2359 11 1 2.0607 1.8499 -6.4095 12 1 4.0849 1.4112 -5.1488 13 6 1.6164 2.0859 1.2264 14 6 2.3064 1.4617 2.4118 15 6 3.5390 1.9358 2.8219 16 6 4.1730 1.3647 3.9075 17 6 3.5752 0.3101 4.5845 18 6 2.3367 -0.1589 4.1758 19 6 1.7067 0.4157 3.0875 20 6 1.6711 -1.2963 4.9083 21 8 2.6375 -1.9612 5.7276 22 6 3.4144 -1.0580 6.5232 23 6 2.4824 -0.1661 7.3458 24 6 4.3248 -1.8528 7.4614 25 8 4.2078 -0.2480 5.6508 26 1 -0.3633 0.5336 0.8782 27 1 -0.3634 0.4937 -0.9013 28 1 -0.3633 -1.0274 0.0231 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4746 2.0291 -1.2695 32 1 1.8446 3.1553 -1.1175 33 1 0.6793 3.2164 -4.6808 34 1 0.5364 2.0070 1.3516 35 1 1.8979 3.1364 1.1538 36 1 4.0060 2.7535 2.2929 37 1 5.1358 1.7351 4.2272 38 1 0.7439 0.0473 2.7655 39 1 0.8695 -0.9058 5.5352 40 1 1.2586 -2.0018 4.1870 41 1 1.8680 -0.7866 7.9982 42 1 3.0758 0.5198 7.9504 43 1 1.8392 0.4037 6.6751 44 1 4.9920 -2.4826 6.8730 45 1 4.9145 -1.1635 8.0658 46 1 3.7162 -2.4786 8.1142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274395999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:29 Heat of formation + Delta-G solvation = -57.139071 kcal Electronic energy + Delta-G solvation = -25629.586231 eV Core-core repulsion = 22098.414915 eV Total energy + Delta-G solvation = -3531.171316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -41.26042 -38.76428 -36.90415 -36.32929 -33.16923 -32.52981 -31.54830 -30.60083 -29.32442 -28.00031 -26.81574 -26.10425 -24.60127 -23.22020 -22.79014 -21.84924 -19.82948 -18.97036 -18.79206 -16.86722 -16.28062 -16.14163 -15.73196 -15.15961 -14.99552 -14.87363 -14.72152 -14.08047 -14.07858 -13.97925 -13.46760 -13.13128 -12.89808 -12.77350 -12.62139 -12.54117 -12.49378 -12.14474 -12.02072 -11.80538 -11.44953 -11.41254 -11.18701 -11.02891 -10.78573 -10.74049 -10.62616 -10.43065 -10.20490 -10.03786 -9.73852 -9.20729 -8.70829 -8.42076 -8.01131 -7.14929 -6.01384 -4.02241 1.36410 1.49964 2.99645 3.27302 3.34536 3.38401 3.41862 3.80435 4.31274 4.41323 4.44762 4.55638 4.76809 5.01509 5.07663 5.16511 5.18534 5.21650 5.25386 5.28650 5.32731 5.34375 5.44010 5.56930 5.66278 5.73577 5.77296 5.80058 5.85840 5.99005 6.07913 6.19238 6.23052 6.30345 6.35736 6.47099 6.62738 6.71901 6.86189 6.89249 6.95766 7.32278 7.39294 7.44529 7.82670 8.11052 8.21952 8.57212 9.05878 9.61890 11.09178 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.029067 B = 0.002994 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.073224 B = 9350.296728 C = 9457.177455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 N -0.529 5.529 4 C 0.189 3.811 5 C -0.504 4.504 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.088 3.912 14 C -0.086 4.086 15 C -0.062 4.062 16 C -0.147 4.147 17 C 0.125 3.875 18 C -0.206 4.206 19 C -0.071 4.071 20 C 0.104 3.896 21 O -0.380 6.380 22 C 0.268 3.732 23 C -0.202 4.202 24 C -0.129 4.129 25 O -0.325 6.325 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.004 0.996 32 H 0.025 0.975 33 H 0.261 0.739 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 -6.246 22.750 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.070 4.070 3 N -0.252 5.252 4 C 0.064 3.936 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.040 4.040 14 C -0.087 4.087 15 C -0.080 4.080 16 C -0.166 4.166 17 C 0.081 3.919 18 C -0.207 4.207 19 C -0.089 4.089 20 C 0.029 3.971 21 O -0.300 6.300 22 C 0.192 3.808 23 C -0.260 4.260 24 C -0.186 4.186 25 O -0.241 6.241 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.021 0.979 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.215 -6.330 22.652 23.624 hybrid contribution -0.813 -0.087 -1.038 1.322 sum 1.402 -6.417 21.614 22.590 Atomic orbital electron populations 1.22404 0.99543 1.00784 1.02065 1.21994 0.91945 0.91563 1.01453 1.62379 1.59339 1.01948 1.01570 1.19799 0.94523 0.93561 0.85740 1.21113 1.22895 1.20347 0.89938 0.91989 1.24970 0.95258 0.95260 0.99071 1.69945 1.31974 1.28439 1.23626 0.86587 0.79670 0.79264 0.82053 1.20308 1.21421 1.20184 1.21026 0.96325 0.97917 0.88739 1.19877 0.95421 0.96622 0.96759 1.20922 0.93830 0.99097 0.94177 1.20499 1.01619 0.96217 0.98257 1.18440 0.91659 0.93205 0.88591 1.20145 0.97330 1.01988 1.01252 1.20667 0.99600 0.95314 0.93354 1.21469 0.89920 0.93124 0.92629 1.88284 1.50778 1.33533 1.57400 1.23117 0.87187 0.84911 0.85573 1.22837 1.00708 1.01062 1.01372 1.21646 0.99147 1.00137 0.97656 1.86247 1.39003 1.62871 1.36017 0.93805 0.91120 0.93516 0.90229 0.92767 0.97875 0.95738 0.92931 0.94559 0.90626 0.84989 0.85369 0.85817 0.91381 0.87158 0.90109 0.90206 0.91166 0.90579 0.89931 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 9.15 37.16 0.34 -3.02 16 2 C 0.06 1.14 5.51 -3.82 -0.02 1.12 16 3 N -0.53 -11.20 4.69 -237.51 -1.11 -12.31 16 4 C 0.19 4.79 4.49 -4.97 -0.02 4.77 16 5 C -0.50 -14.02 8.41 -34.44 -0.29 -14.31 16 6 H 0.06 1.73 7.30 -52.48 -0.38 1.35 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.09 1.55 4.93 -4.98 -0.02 1.53 16 14 C -0.09 -1.34 4.89 -104.61 -0.51 -1.86 16 15 C -0.06 -0.91 9.69 -39.62 -0.38 -1.30 16 16 C -0.15 -2.07 9.97 -39.41 -0.39 -2.46 16 17 C 0.13 1.80 6.13 -39.23 -0.24 1.56 16 18 C -0.21 -2.81 5.24 -104.45 -0.55 -3.36 16 19 C -0.07 -1.00 7.58 -39.58 -0.30 -1.30 16 20 C 0.10 1.19 6.18 36.04 0.22 1.41 16 21 O -0.38 -4.70 10.48 -59.11 -0.62 -5.32 16 22 C 0.27 2.91 1.51 -26.73 -0.04 2.87 16 23 C -0.20 -1.75 8.23 37.16 0.31 -1.45 16 24 C -0.13 -1.02 9.24 37.16 0.34 -0.68 16 25 O -0.32 -4.41 9.87 -43.54 -0.43 -4.84 16 26 H 0.04 0.70 5.71 -51.93 -0.30 0.41 16 27 H 0.07 1.47 6.36 -51.93 -0.33 1.14 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.71 6.94 -51.93 -0.36 1.35 16 30 H 0.05 0.97 5.92 -51.93 -0.31 0.66 16 31 H 0.00 0.09 6.04 -51.92 -0.31 -0.22 16 32 H 0.02 0.67 7.93 -51.93 -0.41 0.25 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 34 H 0.04 0.62 6.03 -51.93 -0.31 0.31 16 35 H 0.08 1.32 7.87 -51.93 -0.41 0.92 16 36 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 38 H 0.12 1.62 7.31 -52.48 -0.38 1.23 16 39 H 0.07 0.64 6.97 -51.93 -0.36 0.28 16 40 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.68 6.02 -51.93 -0.31 0.37 16 44 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -30.95 357.63 -9.84 -40.79 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -7.12 Total: 0.39 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.66 Total: -15.00 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.38 Total: -38.08 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.95 -9.84 -40.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274395999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.347 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds