Wall clock time and date at job start Tue Mar 31 2020 08:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47178 * 2 1 4 4 C 1.46903 * 111.00299 * 299.45851 * 3 2 1 5 5 C 1.50702 * 109.46914 * 293.96827 * 4 3 2 6 6 H 1.08005 * 120.00069 * 355.07593 * 5 4 3 7 7 C 1.37874 * 120.00181 * 175.07262 * 5 4 3 8 8 N 1.31521 * 120.00005 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00347 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46840 * 59.99861 * 9 7 5 11 11 H 1.48491 * 109.47127 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47097 * 300.00644 * 9 7 5 13 13 C 1.46900 * 110.99739 * 63.41011 * 3 2 1 14 14 C 1.50699 * 109.47499 * 66.04828 * 13 3 2 15 15 C 1.38282 * 119.95826 * 89.99594 * 14 13 3 16 16 C 1.38084 * 120.03489 * 180.02562 * 15 14 13 17 17 C 1.38845 * 119.98927 * 0.27161 * 16 15 14 18 18 C 1.38592 * 119.86730 * 359.40574 * 17 16 15 19 19 C 1.38215 * 119.95510 * 270.02213 * 14 13 3 20 20 C 1.50776 * 120.43307 * 180.47613 * 18 17 16 21 21 O 1.43081 * 109.30390 * 344.09242 * 20 18 17 22 22 C 1.43260 * 113.03770 * 48.57631 * 21 20 18 23 23 C 1.53000 * 109.61522 * 54.30212 * 22 21 20 24 24 C 1.52998 * 109.61592 * 174.65407 * 22 21 20 25 25 O 1.35972 * 119.59404 * 179.86585 * 17 16 15 26 26 H 1.08995 * 109.46935 * 301.28539 * 1 2 3 27 27 H 1.09003 * 109.47552 * 61.28631 * 1 2 3 28 28 H 1.09000 * 109.46722 * 181.28658 * 1 2 3 29 29 H 1.09000 * 109.46658 * 240.00153 * 2 1 3 30 30 H 1.08994 * 109.47023 * 120.00352 * 2 1 3 31 31 H 1.09008 * 109.47036 * 53.96170 * 4 3 2 32 32 H 1.08990 * 109.47649 * 173.96612 * 4 3 2 33 33 H 0.96992 * 120.00060 * 179.97438 * 8 7 5 34 34 H 1.09007 * 109.47184 * 306.04267 * 13 3 2 35 35 H 1.09003 * 109.47272 * 186.05065 * 13 3 2 36 36 H 1.08006 * 119.98398 * 0.04638 * 15 14 13 37 37 H 1.08001 * 120.00986 * 179.97438 * 16 15 14 38 38 H 1.08004 * 119.94757 * 359.96087 * 19 14 13 39 39 H 1.08998 * 109.50094 * 104.04190 * 20 18 17 40 40 H 1.09000 * 109.50107 * 224.14110 * 20 18 17 41 41 H 1.09001 * 109.47034 * 59.99600 * 23 22 21 42 42 H 1.08999 * 109.47355 * 179.97438 * 23 22 21 43 43 H 1.09003 * 109.47125 * 300.00275 * 23 22 21 44 44 H 1.08993 * 109.47459 * 59.99811 * 24 22 21 45 45 H 1.09000 * 109.47116 * 180.02562 * 24 22 21 46 46 H 1.09005 * 109.46614 * 300.00102 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5593 2.1062 -1.1941 5 6 2.1922 1.5018 -2.4211 6 1 2.9289 0.7187 -2.3186 7 6 1.8307 1.9486 -3.6743 8 7 0.9333 2.9019 -3.7991 9 14 2.6157 1.2000 -5.1952 10 1 2.3261 -0.2560 -5.2359 11 1 2.0607 1.8499 -6.4095 12 1 4.0849 1.4112 -5.1488 13 6 1.6164 2.0859 1.2264 14 6 2.3064 1.4617 2.4118 15 6 3.5390 1.9358 2.8219 16 6 4.1730 1.3647 3.9075 17 6 3.5752 0.3101 4.5845 18 6 2.3367 -0.1589 4.1758 19 6 1.7067 0.4157 3.0875 20 6 1.6711 -1.2963 4.9083 21 8 2.6375 -1.9612 5.7276 22 6 3.4144 -1.0580 6.5232 23 6 2.4824 -0.1661 7.3458 24 6 4.3248 -1.8528 7.4614 25 8 4.2078 -0.2480 5.6508 26 1 -0.3633 0.5336 0.8782 27 1 -0.3634 0.4937 -0.9013 28 1 -0.3633 -1.0274 0.0231 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 0.4746 2.0291 -1.2695 32 1 1.8446 3.1553 -1.1175 33 1 0.6793 3.2164 -4.6808 34 1 0.5364 2.0070 1.3516 35 1 1.8979 3.1364 1.1538 36 1 4.0060 2.7535 2.2929 37 1 5.1358 1.7351 4.2272 38 1 0.7439 0.0473 2.7655 39 1 0.8695 -0.9058 5.5352 40 1 1.2586 -2.0018 4.1870 41 1 1.8680 -0.7866 7.9982 42 1 3.0758 0.5198 7.9504 43 1 1.8392 0.4037 6.6751 44 1 4.9920 -2.4826 6.8730 45 1 4.9145 -1.1635 8.0658 46 1 3.7162 -2.4786 8.1142 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274395999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:25 Heat of formation + Delta-G solvation = -75.501064 kcal Electronic energy + Delta-G solvation = -25630.382467 eV Core-core repulsion = 22098.414915 eV Total energy + Delta-G solvation = -3531.967551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.21318 -39.99527 -38.26219 -37.37657 -34.79896 -33.90132 -32.54477 -31.82171 -30.94872 -28.92420 -28.34841 -27.02983 -26.07203 -24.96736 -23.86741 -23.04486 -21.24029 -20.15911 -19.76919 -18.34926 -17.86924 -17.13060 -16.83000 -16.65984 -16.49878 -16.23294 -15.73376 -15.62320 -15.20913 -15.07099 -14.74015 -14.41899 -14.19210 -13.78851 -13.66086 -13.48080 -13.40146 -13.12485 -13.11578 -13.09760 -12.92792 -12.79949 -12.67905 -12.65768 -12.47549 -12.19140 -12.08669 -11.77779 -11.62266 -11.49023 -11.23634 -11.08140 -10.57917 -9.77918 -9.16844 -8.84133 -8.17404 -6.26529 0.27607 0.36801 1.40923 1.43384 1.51251 2.08884 2.40549 2.45937 2.70118 3.14870 3.48079 3.57192 3.61835 3.72668 3.80065 3.90496 4.19771 4.27842 4.29771 4.33121 4.40174 4.48421 4.49990 4.58128 4.61763 4.65221 4.67808 4.71163 4.74617 4.88499 4.97387 4.99966 5.01183 5.06393 5.10949 5.21701 5.27143 5.31267 5.40213 5.51703 5.67531 5.68715 5.72156 5.85338 6.10460 6.38634 6.40772 6.69022 6.90091 7.42637 8.92498 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.029067 B = 0.002994 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.073224 B = 9350.296728 C = 9457.177455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.062 3.938 3 N -0.539 5.539 4 C 0.205 3.795 5 C -0.519 4.519 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.093 3.907 14 C -0.102 4.102 15 C -0.070 4.070 16 C -0.152 4.152 17 C 0.117 3.883 18 C -0.206 4.206 19 C -0.069 4.069 20 C 0.101 3.899 21 O -0.393 6.393 22 C 0.252 3.748 23 C -0.197 4.197 24 C -0.128 4.128 25 O -0.337 6.337 26 H 0.061 0.939 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.076 0.924 31 H -0.016 1.016 32 H -0.002 1.002 33 H 0.263 0.737 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -7.831 24.456 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.066 4.066 3 N -0.263 5.263 4 C 0.079 3.921 5 C -0.557 4.557 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.196 1.196 13 C -0.034 4.034 14 C -0.102 4.102 15 C -0.089 4.089 16 C -0.171 4.171 17 C 0.072 3.928 18 C -0.207 4.207 19 C -0.088 4.088 20 C 0.026 3.974 21 O -0.314 6.314 22 C 0.177 3.823 23 C -0.254 4.254 24 C -0.184 4.184 25 O -0.254 6.254 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.002 0.998 32 H 0.016 0.984 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.155 0.845 39 H 0.108 0.892 40 H 0.140 0.860 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.116 0.884 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.336 -7.928 24.385 25.748 hybrid contribution -0.819 0.383 -1.430 1.692 sum 1.516 -7.545 22.956 24.211 Atomic orbital electron populations 1.22273 0.98100 1.02292 1.01025 1.21955 0.93116 0.90339 1.01190 1.62249 1.59822 1.02717 1.01468 1.19427 0.93046 0.92417 0.87252 1.21402 1.22859 1.20252 0.91223 0.92503 1.25814 0.95697 0.95608 1.02214 1.70064 1.33223 1.29674 1.24423 0.85539 0.78801 0.78718 0.78185 1.19394 1.20832 1.19608 1.20971 0.96919 0.97499 0.88014 1.19703 0.96046 0.97875 0.96602 1.20992 0.93798 0.99412 0.94652 1.20655 1.02169 0.96292 0.97938 1.18655 0.91991 0.93192 0.88926 1.20405 0.97070 1.02329 1.00942 1.20753 1.00013 0.94715 0.93317 1.21637 0.90070 0.92623 0.93091 1.88273 1.51113 1.34293 1.57688 1.23696 0.87939 0.85275 0.85342 1.22818 1.00430 1.01047 1.01153 1.21746 0.99048 1.00301 0.97337 1.86244 1.40007 1.63130 1.36042 0.92034 0.94715 0.90835 0.92733 0.90615 0.99840 0.98385 0.92783 0.93970 0.91292 0.84866 0.84017 0.84525 0.89174 0.86049 0.88031 0.89227 0.92339 0.91584 0.88406 0.87672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.20 9.15 71.98 0.66 -5.54 16 2 C 0.06 2.40 5.51 86.30 0.48 2.87 16 3 N -0.54 -23.23 4.69 -905.36 -4.25 -27.48 16 4 C 0.20 10.79 4.49 85.56 0.38 11.17 16 5 C -0.52 -29.56 8.41 25.60 0.22 -29.34 16 6 H 0.06 3.23 7.30 -2.91 -0.02 3.21 16 7 C 0.00 0.26 5.46 84.65 0.46 0.73 16 8 N -0.93 -56.09 13.29 21.45 0.28 -55.81 16 9 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 13 C 0.09 3.32 4.93 85.56 0.42 3.74 16 14 C -0.10 -3.11 4.89 -19.86 -0.10 -3.21 16 15 C -0.07 -2.05 9.69 22.24 0.22 -1.83 16 16 C -0.15 -4.14 9.97 22.38 0.22 -3.92 16 17 C 0.12 3.21 6.13 22.50 0.14 3.35 16 18 C -0.21 -5.24 5.24 -19.75 -0.10 -5.35 16 19 C -0.07 -1.86 7.58 22.27 0.17 -1.69 16 20 C 0.10 2.05 6.18 71.26 0.44 2.49 16 21 O -0.39 -8.81 10.48 -126.15 -1.32 -10.13 16 22 C 0.25 4.91 1.51 30.59 0.05 4.95 16 23 C -0.20 -2.88 8.23 71.98 0.59 -2.29 16 24 C -0.13 -1.71 9.24 71.98 0.67 -1.04 16 25 O -0.34 -8.62 9.87 -70.40 -0.69 -9.32 16 26 H 0.06 1.90 5.71 -2.39 -0.01 1.88 16 27 H 0.03 1.45 6.36 -2.39 -0.02 1.44 16 28 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 2.36 6.94 -2.39 -0.02 2.35 16 30 H 0.08 2.60 5.92 -2.39 -0.01 2.58 16 31 H -0.02 -0.90 6.04 -2.38 -0.01 -0.91 16 32 H 0.00 -0.11 7.93 -2.39 -0.02 -0.13 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.04 1.44 6.03 -2.38 -0.01 1.43 16 35 H 0.07 2.50 7.87 -2.39 -0.02 2.48 16 36 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 37 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 38 H 0.14 3.23 7.31 -2.91 -0.02 3.21 16 39 H 0.09 1.43 6.97 -2.39 -0.02 1.41 16 40 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.00 6.02 -2.39 -0.01 0.98 16 44 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -67.37 357.63 1.92 -65.45 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.97 Total: 15.41 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 4.91 Total: -24.91 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -3.96 Total: -83.29 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -2.02 Total: -19.44 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.37 1.92 -65.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274395999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.053 kcal (2) G-P(sol) polarization free energy of solvation -67.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds