Wall clock time and date at job start Tue Mar 31 2020 08:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47229 * 2 1 4 4 C 1.46899 * 111.00238 * 75.85982 * 3 2 1 5 5 C 1.52995 * 109.47372 * 199.66813 * 4 3 2 6 6 H 1.09003 * 109.69988 * 299.91630 * 5 4 3 7 7 C 1.53467 * 109.74171 * 179.31506 * 5 4 3 8 8 O 1.43181 * 108.23436 * 180.54090 * 7 5 4 9 9 C 1.36108 * 116.69477 * 46.23146 * 8 7 5 10 10 C 1.38703 * 119.39028 * 162.84108 * 9 8 7 11 11 C 1.38193 * 120.07144 * 179.79786 * 10 9 8 12 12 C 1.38260 * 120.10946 * 359.97438 * 11 10 9 13 13 C 1.38195 * 120.10932 * 0.40239 * 12 11 10 14 14 C 1.38704 * 120.07125 * 359.36968 * 13 12 11 15 15 O 1.36105 * 119.39954 * 180.19309 * 14 13 12 16 16 C 1.46905 * 111.00016 * 199.80732 * 3 2 1 17 17 H 1.09001 * 109.47340 * 186.04651 * 16 3 2 18 18 C 1.53002 * 109.47204 * 306.05083 * 16 3 2 19 19 C 1.53000 * 109.46742 * 66.04713 * 16 3 2 20 20 C 1.50705 * 109.47383 * 65.00101 * 19 16 3 21 21 H 1.07998 * 119.99647 * 359.97438 * 20 19 16 22 22 C 1.37870 * 120.00428 * 180.02562 * 20 19 16 23 23 N 1.31518 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00325 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47294 * 59.99648 * 24 22 20 26 26 H 1.48503 * 109.47313 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47005 * 299.99865 * 24 22 20 28 28 H 1.08996 * 109.46948 * 174.83746 * 1 2 3 29 29 H 1.08994 * 109.47118 * 294.83992 * 1 2 3 30 30 H 1.09004 * 109.46773 * 54.84188 * 1 2 3 31 31 H 1.09005 * 109.47484 * 239.99785 * 2 1 3 32 32 H 1.09008 * 109.47231 * 120.00198 * 2 1 3 33 33 H 1.09003 * 109.47342 * 79.66140 * 4 3 2 34 34 H 1.09009 * 109.46720 * 319.66593 * 4 3 2 35 35 H 1.08998 * 109.71390 * 300.22238 * 7 5 4 36 36 H 1.08999 * 109.71035 * 60.81991 * 7 5 4 37 37 H 1.08003 * 119.96503 * 359.81729 * 10 9 8 38 38 H 1.07994 * 119.94942 * 180.02562 * 11 10 9 39 39 H 1.07994 * 119.94278 * 180.10799 * 12 11 10 40 40 H 1.08005 * 119.96209 * 179.74063 * 13 12 11 41 41 H 1.08998 * 109.47535 * 60.00026 * 18 16 3 42 42 H 1.08999 * 109.46872 * 179.97438 * 18 16 3 43 43 H 1.09001 * 109.46991 * 299.99317 * 18 16 3 44 44 H 1.08998 * 109.47328 * 184.99543 * 19 16 3 45 45 H 1.09000 * 109.47268 * 304.99831 * 19 16 3 46 46 H 0.96998 * 120.00374 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8793 1.9930 1.3298 5 6 1.9216 3.5170 1.2009 6 1 2.8722 3.8225 0.7638 7 6 1.7582 4.1590 2.5852 8 8 1.7897 5.5816 2.4258 9 6 1.0318 6.1012 1.4217 10 6 0.7289 7.4548 1.4281 11 6 -0.0360 7.9980 0.4135 12 6 -0.5010 7.1943 -0.6109 13 6 -0.2094 5.8435 -0.6191 14 6 0.5618 5.2928 0.3937 15 8 0.8440 3.9615 0.3700 16 6 3.4117 1.4512 -0.4647 17 1 3.7838 2.4697 -0.3537 18 6 4.2732 0.4998 0.3681 19 6 3.4776 1.0418 -1.9375 20 6 2.7301 2.0490 -2.7729 21 1 2.2551 2.8961 -2.3005 22 6 2.6516 1.8885 -4.1399 23 7 3.2296 0.8566 -4.7151 24 14 1.7244 3.1365 -5.1753 25 1 2.3419 4.4764 -5.0063 26 1 1.7885 2.7392 -6.6047 27 1 0.3061 3.1864 -4.7380 28 1 -0.3633 -1.0235 -0.0925 29 1 -0.3633 0.4317 0.9325 30 1 -0.3633 0.5918 -0.8402 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.6963 1.6597 1.9699 34 1 0.9279 1.6918 1.7685 35 1 0.8047 3.8589 3.0196 36 1 2.5741 3.8433 3.2354 37 1 1.0915 8.0849 2.2268 38 1 -0.2703 9.0522 0.4202 39 1 -1.0971 7.6219 -1.4034 40 1 -0.5774 5.2170 -1.4183 41 1 3.9012 -0.5187 0.2571 42 1 5.3060 0.5487 0.0229 43 1 4.2263 0.7915 1.4173 44 1 4.5187 1.0051 -2.2582 45 1 3.0242 0.0584 -2.0619 46 1 3.1747 0.7438 -5.6770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276340081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:31 Heat of formation + Delta-G solvation = -42.776998 kcal Electronic energy + Delta-G solvation = -26432.073255 eV Core-core repulsion = 22901.524726 eV Total energy + Delta-G solvation = -3530.548529 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10526 -38.46050 -37.41191 -36.87218 -33.19294 -32.04888 -31.48098 -30.52301 -29.20123 -28.05278 -27.25562 -25.43667 -23.50834 -22.90978 -22.48397 -21.68077 -20.52043 -18.91922 -18.16986 -17.34515 -16.67090 -16.13097 -15.43374 -15.32267 -15.09618 -14.79839 -14.35999 -14.26432 -14.05648 -13.99851 -13.71829 -13.42269 -13.24281 -12.72172 -12.40438 -11.97706 -11.82323 -11.79235 -11.67813 -11.54005 -11.31949 -11.23512 -11.07399 -10.97251 -10.75505 -10.62388 -10.41148 -10.26454 -10.08519 -9.80220 -9.17360 -8.94239 -8.51080 -8.20910 -7.88223 -7.51509 -5.84780 -3.81505 1.41541 1.46091 3.14969 3.38736 3.44530 3.47347 3.52224 3.86917 4.11250 4.57280 4.61237 4.86402 4.86745 4.92877 5.08595 5.21261 5.31815 5.36733 5.47076 5.51972 5.55883 5.58873 5.60760 5.73492 5.77851 5.84726 5.90354 6.00968 6.02769 6.07781 6.23969 6.25271 6.35991 6.39593 6.56753 6.57684 6.66492 6.75442 6.80116 6.95752 7.09899 7.53047 7.63008 7.69372 7.88656 8.00921 8.16522 8.61992 9.24953 9.80120 11.27329 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.005975 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.300476 B = 4685.216016 C = 6316.522954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 N -0.500 5.500 4 C 0.058 3.942 5 C 0.062 3.938 6 H 0.086 0.914 7 C 0.026 3.974 8 O -0.310 6.310 9 C 0.039 3.961 10 C -0.117 4.117 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.114 4.114 14 C 0.065 3.935 15 O -0.271 6.271 16 C 0.082 3.918 17 H 0.067 0.933 18 C -0.185 4.185 19 C 0.032 3.968 20 C -0.485 4.485 21 H 0.062 0.938 22 C 0.051 3.949 23 N -0.906 5.906 24 Si 0.887 3.113 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.277 1.277 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.017 0.983 45 H 0.020 0.980 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 6.665 15.188 17.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 N -0.223 5.223 4 C -0.071 4.071 5 C 0.005 3.995 6 H 0.103 0.897 7 C -0.050 4.050 8 O -0.224 6.224 9 C -0.006 4.006 10 C -0.136 4.136 11 C -0.146 4.146 12 C -0.134 4.134 13 C -0.133 4.133 14 C 0.019 3.981 15 O -0.185 6.185 16 C -0.025 4.025 17 H 0.085 0.915 18 C -0.244 4.244 19 C -0.005 4.005 20 C -0.524 4.524 21 H 0.080 0.920 22 C -0.148 4.148 23 N -0.547 5.547 24 Si 0.716 3.284 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.251 6.783 14.705 17.024 hybrid contribution 0.150 0.050 -0.052 0.167 sum -5.101 6.833 14.653 16.953 Atomic orbital electron populations 1.21736 0.95767 1.00561 1.01868 1.22058 0.95400 0.89278 1.00661 1.62055 1.21533 1.17642 1.21041 1.22073 1.01569 0.90513 0.92966 1.23185 0.90666 0.96294 0.89390 0.89662 1.23636 1.04122 0.79310 0.97979 1.86263 1.64373 1.22448 1.49346 1.18942 0.98617 0.93834 0.89196 1.20350 1.00627 0.91984 1.00617 1.20816 0.99309 0.99813 0.94657 1.20906 1.00874 0.92686 0.98964 1.20564 1.00194 0.95200 0.97312 1.19107 0.99770 0.84679 0.94513 1.86564 1.50134 1.18214 1.63554 1.22009 0.84671 0.97725 0.98138 0.91505 1.22547 1.01556 1.01115 0.99157 1.19194 0.96928 0.97144 0.87253 1.21135 1.31479 1.08793 0.90975 0.91996 1.24971 0.96114 0.95559 0.98150 1.69952 1.45385 1.29247 1.10138 0.86731 0.80754 0.81941 0.79011 1.20533 1.21773 1.20279 0.93316 0.94005 0.91244 0.89358 0.96171 0.92816 0.90355 0.90765 0.86461 0.85348 0.85530 0.85392 0.84576 0.92752 0.92409 0.94268 0.96440 0.96170 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.96 37.16 0.37 -1.84 16 2 C 0.05 0.91 4.27 -3.83 -0.02 0.89 16 3 N -0.50 -9.09 3.91 -226.64 -0.89 -9.98 16 4 C 0.06 0.83 4.42 -3.83 -0.02 0.82 16 5 C 0.06 0.95 3.07 -26.49 -0.08 0.87 16 6 H 0.09 1.44 6.80 -51.93 -0.35 1.08 16 7 C 0.03 0.32 6.56 37.40 0.25 0.56 16 8 O -0.31 -4.54 10.42 -32.86 -0.34 -4.88 16 9 C 0.04 0.60 6.49 -39.14 -0.25 0.35 16 10 C -0.12 -1.54 9.96 -39.43 -0.39 -1.93 16 11 C -0.13 -1.52 10.04 -39.59 -0.40 -1.92 16 12 C -0.12 -1.50 10.04 -39.59 -0.40 -1.90 16 13 C -0.11 -1.80 9.96 -39.42 -0.39 -2.20 16 14 C 0.07 1.11 6.49 -39.14 -0.25 0.85 16 15 O -0.27 -4.93 9.95 -32.85 -0.33 -5.26 16 16 C 0.08 1.62 2.17 -67.71 -0.15 1.48 16 17 H 0.07 1.37 6.64 -51.93 -0.34 1.02 16 18 C -0.18 -3.00 8.55 37.16 0.32 -2.69 16 19 C 0.03 0.79 4.39 -27.88 -0.12 0.67 16 20 C -0.49 -13.60 8.84 -34.44 -0.30 -13.91 16 21 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 22 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 23 N -0.91 -27.38 13.29 55.43 0.74 -26.64 16 24 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.58 6.90 -51.93 -0.36 0.22 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.09 1.73 5.80 -51.93 -0.30 1.43 16 32 H 0.02 0.30 7.32 -51.92 -0.38 -0.08 16 33 H 0.05 0.68 6.18 -51.93 -0.32 0.36 16 34 H 0.08 1.05 6.57 -51.92 -0.34 0.71 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.14 2.19 8.06 -52.48 -0.42 1.76 16 41 H 0.05 0.88 6.76 -51.93 -0.35 0.52 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.54 6.45 -51.93 -0.34 0.21 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.02 0.53 6.08 -51.93 -0.32 0.22 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -31.72 361.74 -9.50 -41.23 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.17 Total: 1.15 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -1.94 Total: -18.51 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.15 Total: -36.61 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.67 Total: -10.13 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.72 -9.50 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276340081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.552 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds