Wall clock time and date at job start Tue Mar 31 2020 08:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47229 * 2 1 4 4 C 1.46899 * 111.00238 * 75.85982 * 3 2 1 5 5 C 1.52995 * 109.47372 * 199.66813 * 4 3 2 6 6 H 1.09003 * 109.69988 * 299.91630 * 5 4 3 7 7 C 1.53467 * 109.74171 * 179.31506 * 5 4 3 8 8 O 1.43181 * 108.23436 * 180.54090 * 7 5 4 9 9 C 1.36108 * 116.69477 * 46.23146 * 8 7 5 10 10 C 1.38703 * 119.39028 * 162.84108 * 9 8 7 11 11 C 1.38193 * 120.07144 * 179.79786 * 10 9 8 12 12 C 1.38260 * 120.10946 * 359.97438 * 11 10 9 13 13 C 1.38195 * 120.10932 * 0.40239 * 12 11 10 14 14 C 1.38704 * 120.07125 * 359.36968 * 13 12 11 15 15 O 1.36105 * 119.39954 * 180.19309 * 14 13 12 16 16 C 1.46905 * 111.00016 * 199.80732 * 3 2 1 17 17 H 1.09001 * 109.47340 * 186.04651 * 16 3 2 18 18 C 1.53002 * 109.47204 * 306.05083 * 16 3 2 19 19 C 1.53000 * 109.46742 * 66.04713 * 16 3 2 20 20 C 1.50705 * 109.47383 * 65.00101 * 19 16 3 21 21 H 1.07998 * 119.99647 * 359.97438 * 20 19 16 22 22 C 1.37870 * 120.00428 * 180.02562 * 20 19 16 23 23 N 1.31518 * 120.00006 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00325 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47294 * 59.99648 * 24 22 20 26 26 H 1.48503 * 109.47313 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47005 * 299.99865 * 24 22 20 28 28 H 1.08996 * 109.46948 * 174.83746 * 1 2 3 29 29 H 1.08994 * 109.47118 * 294.83992 * 1 2 3 30 30 H 1.09004 * 109.46773 * 54.84188 * 1 2 3 31 31 H 1.09005 * 109.47484 * 239.99785 * 2 1 3 32 32 H 1.09008 * 109.47231 * 120.00198 * 2 1 3 33 33 H 1.09003 * 109.47342 * 79.66140 * 4 3 2 34 34 H 1.09009 * 109.46720 * 319.66593 * 4 3 2 35 35 H 1.08998 * 109.71390 * 300.22238 * 7 5 4 36 36 H 1.08999 * 109.71035 * 60.81991 * 7 5 4 37 37 H 1.08003 * 119.96503 * 359.81729 * 10 9 8 38 38 H 1.07994 * 119.94942 * 180.02562 * 11 10 9 39 39 H 1.07994 * 119.94278 * 180.10799 * 12 11 10 40 40 H 1.08005 * 119.96209 * 179.74063 * 13 12 11 41 41 H 1.08998 * 109.47535 * 60.00026 * 18 16 3 42 42 H 1.08999 * 109.46872 * 179.97438 * 18 16 3 43 43 H 1.09001 * 109.46991 * 299.99317 * 18 16 3 44 44 H 1.08998 * 109.47328 * 184.99543 * 19 16 3 45 45 H 1.09000 * 109.47268 * 304.99831 * 19 16 3 46 46 H 0.96998 * 120.00374 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8793 1.9930 1.3298 5 6 1.9216 3.5170 1.2009 6 1 2.8722 3.8225 0.7638 7 6 1.7582 4.1590 2.5852 8 8 1.7897 5.5816 2.4258 9 6 1.0318 6.1012 1.4217 10 6 0.7289 7.4548 1.4281 11 6 -0.0360 7.9980 0.4135 12 6 -0.5010 7.1943 -0.6109 13 6 -0.2094 5.8435 -0.6191 14 6 0.5618 5.2928 0.3937 15 8 0.8440 3.9615 0.3700 16 6 3.4117 1.4512 -0.4647 17 1 3.7838 2.4697 -0.3537 18 6 4.2732 0.4998 0.3681 19 6 3.4776 1.0418 -1.9375 20 6 2.7301 2.0490 -2.7729 21 1 2.2551 2.8961 -2.3005 22 6 2.6516 1.8885 -4.1399 23 7 3.2296 0.8566 -4.7151 24 14 1.7244 3.1365 -5.1753 25 1 2.3419 4.4764 -5.0063 26 1 1.7885 2.7392 -6.6047 27 1 0.3061 3.1864 -4.7380 28 1 -0.3633 -1.0235 -0.0925 29 1 -0.3633 0.4317 0.9325 30 1 -0.3633 0.5918 -0.8402 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.6963 1.6597 1.9699 34 1 0.9279 1.6918 1.7685 35 1 0.8047 3.8589 3.0196 36 1 2.5741 3.8433 3.2354 37 1 1.0915 8.0849 2.2268 38 1 -0.2703 9.0522 0.4202 39 1 -1.0971 7.6219 -1.4034 40 1 -0.5774 5.2170 -1.4183 41 1 3.9012 -0.5187 0.2571 42 1 5.3060 0.5487 0.0229 43 1 4.2263 0.7915 1.4173 44 1 4.5187 1.0051 -2.2582 45 1 3.0242 0.0584 -2.0619 46 1 3.1747 0.7438 -5.6770 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276340081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:30 Heat of formation + Delta-G solvation = -61.967118 kcal Electronic energy + Delta-G solvation = -26432.905401 eV Core-core repulsion = 22901.524726 eV Total energy + Delta-G solvation = -3531.380675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.20848 -39.81229 -38.49696 -38.06156 -35.16102 -33.39400 -33.04068 -31.58259 -30.46595 -29.40528 -28.92197 -26.60823 -25.21528 -24.23119 -23.60860 -23.24609 -21.61674 -20.25661 -19.43294 -18.48552 -18.28544 -17.78281 -16.82141 -16.72594 -16.35226 -16.17876 -15.80960 -15.47099 -15.31879 -15.19918 -14.81186 -14.67218 -14.54071 -14.36437 -13.74669 -13.57384 -13.39174 -13.12664 -12.91974 -12.84638 -12.66459 -12.61788 -12.56254 -12.51465 -12.34976 -12.08510 -12.00060 -11.73301 -11.39477 -11.29874 -11.09531 -10.94293 -10.46107 -9.59242 -8.99602 -8.86182 -8.10466 -6.13070 0.33786 0.38893 1.36756 1.39271 1.47150 2.10721 2.32689 2.45659 2.79486 2.92239 3.23816 3.42336 3.73622 3.78823 3.87136 4.14908 4.17592 4.19670 4.26668 4.33641 4.37095 4.41876 4.45147 4.49885 4.57458 4.64109 4.65175 4.71839 4.75210 4.93524 4.99394 5.00894 5.20700 5.22618 5.24656 5.26932 5.28037 5.45182 5.53518 5.54065 5.70471 5.76585 5.90884 6.02178 6.33552 6.46024 6.52029 6.58433 7.00216 7.51893 9.01257 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.005975 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.300476 B = 4685.216016 C = 6316.522954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.056 3.944 3 N -0.527 5.527 4 C 0.063 3.937 5 C 0.058 3.942 6 H 0.060 0.940 7 C 0.031 3.969 8 O -0.318 6.318 9 C 0.025 3.975 10 C -0.119 4.119 11 C -0.116 4.116 12 C -0.114 4.114 13 C -0.142 4.142 14 C 0.034 3.966 15 O -0.303 6.303 16 C 0.094 3.906 17 H 0.055 0.945 18 C -0.174 4.174 19 C 0.037 3.963 20 C -0.490 4.490 21 H 0.050 0.950 22 C -0.001 4.001 23 N -0.938 5.938 24 Si 0.946 3.054 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.119 0.881 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.073 0.927 44 H -0.010 1.010 45 H 0.001 0.999 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 8.239 17.615 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 N -0.250 5.250 4 C -0.065 4.065 5 C 0.001 3.999 6 H 0.077 0.923 7 C -0.044 4.044 8 O -0.233 6.233 9 C -0.020 4.020 10 C -0.138 4.138 11 C -0.134 4.134 12 C -0.132 4.132 13 C -0.161 4.161 14 C -0.012 4.012 15 O -0.218 6.218 16 C -0.014 4.014 17 H 0.073 0.927 18 C -0.233 4.233 19 C 0.000 4.000 20 C -0.528 4.528 21 H 0.068 0.932 22 C -0.197 4.197 23 N -0.581 5.581 24 Si 0.772 3.228 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.137 0.863 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.008 0.992 45 H 0.019 0.981 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.965 8.363 17.147 19.988 hybrid contribution 0.350 -0.395 -0.804 0.962 sum -5.616 7.968 16.342 19.029 Atomic orbital electron populations 1.21667 0.94797 1.01282 1.01407 1.22004 0.96124 0.88700 1.00290 1.61873 1.20424 1.18672 1.24072 1.22152 1.03410 0.89690 0.91241 1.23270 0.88971 0.96953 0.90735 0.92250 1.23813 1.06216 0.78010 0.96403 1.86235 1.64402 1.23631 1.48990 1.19201 0.98970 0.94671 0.89179 1.20786 1.00166 0.91299 1.01504 1.21283 0.97488 1.01465 0.93184 1.21254 1.00530 0.91478 0.99976 1.20717 1.01412 0.96649 0.97295 1.19401 1.01270 0.84646 0.95870 1.86502 1.51050 1.19281 1.64954 1.21619 0.86776 0.97740 0.95307 0.92702 1.22406 1.00421 1.00114 1.00373 1.19051 0.94348 0.95536 0.91034 1.21381 1.31069 1.08823 0.91560 0.93208 1.25727 0.97127 0.97364 0.99498 1.70065 1.46791 1.30866 1.10361 0.85793 0.79542 0.79819 0.77642 1.19969 1.20984 1.19938 0.91424 0.91936 0.94709 0.92886 0.93156 0.89897 0.88827 0.89488 0.83031 0.82941 0.81617 0.82832 0.86337 0.92650 0.92664 0.90811 0.99218 0.98106 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 9.96 71.98 0.72 -3.38 16 2 C 0.06 1.88 4.27 86.30 0.37 2.25 16 3 N -0.53 -19.17 3.91 -870.95 -3.41 -22.58 16 4 C 0.06 1.71 4.42 86.30 0.38 2.09 16 5 C 0.06 1.74 3.07 30.75 0.09 1.84 16 6 H 0.06 2.05 6.80 -2.39 -0.02 2.04 16 7 C 0.03 0.70 6.56 72.14 0.47 1.17 16 8 O -0.32 -8.82 10.42 -82.56 -0.86 -9.68 16 9 C 0.02 0.74 6.49 22.56 0.15 0.88 16 10 C -0.12 -2.85 9.96 22.37 0.22 -2.63 16 11 C -0.12 -2.42 10.04 22.26 0.22 -2.20 16 12 C -0.11 -2.79 10.04 22.26 0.22 -2.57 16 13 C -0.14 -4.60 9.96 22.37 0.22 -4.37 16 14 C 0.03 1.16 6.49 22.56 0.15 1.31 16 15 O -0.30 -11.36 9.95 -82.53 -0.82 -12.18 16 16 C 0.09 3.76 2.17 44.92 0.10 3.86 16 17 H 0.05 2.31 6.64 -2.39 -0.02 2.29 16 18 C -0.17 -5.45 8.55 71.98 0.62 -4.83 16 19 C 0.04 1.96 4.39 29.85 0.13 2.10 16 20 C -0.49 -28.69 8.84 25.60 0.23 -28.47 16 21 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 22 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 23 N -0.94 -58.62 13.29 21.45 0.28 -58.34 16 24 Si 0.95 47.43 29.54 68.60 2.03 49.46 16 25 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 26 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.27 -13.50 7.11 99.48 0.71 -12.79 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.63 6.90 -2.39 -0.02 1.62 16 30 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.05 2.15 5.80 -2.38 -0.01 2.13 16 32 H 0.05 1.38 7.32 -2.38 -0.02 1.36 16 33 H 0.08 1.77 6.18 -2.39 -0.01 1.76 16 34 H 0.09 2.27 6.57 -2.38 -0.02 2.25 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.05 1.72 6.76 -2.39 -0.02 1.70 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 1.80 6.45 -2.39 -0.02 1.78 16 44 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.00 0.04 6.08 -2.39 -0.01 0.03 16 46 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -73.06 361.74 2.94 -70.13 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.96 Total: 15.76 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 4.75 Total: -32.57 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -3.12 Total: -80.92 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -1.68 Total: -21.86 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -73.06 2.94 -70.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276340081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.161 kcal (2) G-P(sol) polarization free energy of solvation -73.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds